HEADER OXIDOREDUCTASE 26-MAY-22 8D10 TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH (1-METHYL-1H-PYRAZOL-5- TITLE 2 YL)METHANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, MICROFRAG SCREENING, KEYWDS 2 OXIDOREDUCTASE, FBDD, FRAGMENT, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.WHITEHOUSE,O.V.ILYICHOVA,A.J.TAYLOR REVDAT 3 25-OCT-23 8D10 1 REMARK REVDAT 2 22-FEB-23 8D10 1 JRNL REVDAT 1 07-DEC-22 8D10 0 JRNL AUTH R.L.WHITEHOUSE,W.S.ALWAN,O.V.ILYICHOVA,A.J.TAYLOR, JRNL AUTH 2 I.R.CHANDRASHEKARAN,B.MOHANTY,B.C.DOAK,M.J.SCANLON JRNL TITL FRAGMENT SCREENING LIBRARIES FOR THE IDENTIFICATION OF JRNL TITL 2 PROTEIN HOT SPOTS AND THEIR MINIMAL BINDING PHARMACOPHORES. JRNL REF RSC MED CHEM V. 14 135 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 36760747 JRNL DOI 10.1039/D2MD00253A REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.280 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5900 - 2.7400 1.00 11809 157 0.1673 0.1699 REMARK 3 2 2.7400 - 2.1700 1.00 11669 157 0.1926 0.2328 REMARK 3 3 2.1700 - 1.9000 1.00 11607 145 0.1889 0.2098 REMARK 3 4 1.9000 - 1.7200 1.00 11673 139 0.2005 0.2426 REMARK 3 5 1.7200 - 1.6000 1.00 11592 161 0.2036 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.112 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3022 REMARK 3 ANGLE : 0.978 4110 REMARK 3 CHIRALITY : 0.058 449 REMARK 3 PLANARITY : 0.007 564 REMARK 3 DIHEDRAL : 4.534 431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2326 -3.1679 1.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.1932 REMARK 3 T33: 0.1552 T12: -0.0437 REMARK 3 T13: 0.0251 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7027 L22: 4.2681 REMARK 3 L33: 1.9842 L12: 0.2435 REMARK 3 L13: 0.9469 L23: 2.2483 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.1807 S13: -0.0939 REMARK 3 S21: -0.3754 S22: 0.0848 S23: -0.0905 REMARK 3 S31: -0.0211 S32: 0.0333 S33: -0.0555 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7345 5.4501 16.7999 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1323 REMARK 3 T33: 0.1391 T12: -0.0157 REMARK 3 T13: -0.0133 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.6863 L22: 2.1239 REMARK 3 L33: 2.3923 L12: 0.7955 REMARK 3 L13: 0.2762 L23: 0.7394 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0821 S13: -0.0070 REMARK 3 S21: 0.1053 S22: 0.0000 S23: -0.1540 REMARK 3 S31: 0.0719 S32: 0.0115 S33: -0.0140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7810 -7.0036 -3.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.2303 REMARK 3 T33: 0.1930 T12: -0.0311 REMARK 3 T13: -0.0242 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.3003 L22: 5.1515 REMARK 3 L33: 2.7798 L12: 0.2639 REMARK 3 L13: 0.6572 L23: 1.8233 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.2207 S13: -0.1024 REMARK 3 S21: -0.5022 S22: 0.1421 S23: 0.1986 REMARK 3 S31: -0.0322 S32: 0.1627 S33: -0.1005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0562 15.8039 20.0582 REMARK 3 T TENSOR REMARK 3 T11: 0.4899 T22: 0.2931 REMARK 3 T33: 0.3474 T12: 0.1227 REMARK 3 T13: -0.0540 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.4456 L22: 3.5942 REMARK 3 L33: 3.1615 L12: 0.8963 REMARK 3 L13: -0.9349 L23: -0.3478 REMARK 3 S TENSOR REMARK 3 S11: 0.1930 S12: 0.1315 S13: 0.2604 REMARK 3 S21: 0.0117 S22: -0.1872 S23: 0.6538 REMARK 3 S31: -0.8761 S32: -0.7228 S33: -0.0049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2613 -0.7806 23.1798 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1517 REMARK 3 T33: 0.1972 T12: -0.0253 REMARK 3 T13: 0.0137 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.6563 L22: 2.3914 REMARK 3 L33: 3.5340 L12: -0.8525 REMARK 3 L13: 0.1072 L23: 1.1848 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0116 S13: -0.0604 REMARK 3 S21: -0.0091 S22: -0.0147 S23: 0.1749 REMARK 3 S31: 0.1098 S32: -0.0305 S33: 0.0344 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4689 -10.8511 15.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1621 REMARK 3 T33: 0.1196 T12: -0.0100 REMARK 3 T13: -0.0178 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.8971 L22: 4.2052 REMARK 3 L33: 1.4031 L12: -0.0127 REMARK 3 L13: 0.0853 L23: 1.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0124 S13: 0.0128 REMARK 3 S21: -0.1402 S22: -0.0448 S23: -0.0108 REMARK 3 S31: 0.0138 S32: -0.0443 S33: 0.0428 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7912 1.6239 18.3443 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.2108 REMARK 3 T33: 0.2083 T12: 0.0362 REMARK 3 T13: -0.0208 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6567 L22: 2.9478 REMARK 3 L33: 1.8508 L12: 0.7080 REMARK 3 L13: 0.3321 L23: 1.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: 0.0066 S13: 0.1363 REMARK 3 S21: -0.3879 S22: -0.0259 S23: 0.3372 REMARK 3 S31: -0.3527 S32: -0.1828 S33: 0.1403 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 7 or REMARK 3 resid 9 through 23 or resid 25 through 37 REMARK 3 or resid 39 through 53 or (resid 54 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG1)) or (resid 55 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 56 through 69 or REMARK 3 (resid 70 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD )) or resid 71 through 85 or (resid 86 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG or name OD1)) or REMARK 3 resid 87 through 97 or resid 99 through REMARK 3 105 or resid 107 through 113 or resid 115 REMARK 3 through 117 or (resid 118 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 119 through 132 or REMARK 3 resid 134 through 139 or (resid 140 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or resid REMARK 3 141 through 147 or (resid 148 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 149 through 188)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 6 or REMARK 3 (resid 7 and (name N or name CA or name C REMARK 3 or name O or name CB or name CG )) or REMARK 3 resid 9 through 20 or (resid 21 and (name REMARK 3 N or name CA or name C or name O or name REMARK 3 CB )) or resid 22 through 23 or resid 25 REMARK 3 through 37 or resid 39 through 46 or REMARK 3 (resid 47 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD or name CE )) or (resid 48 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 or name CG or name CD )) or resid 49 or REMARK 3 (resid 50 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD1)) or resid 51 through 97 or resid 99 REMARK 3 through 102 or (resid 103 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name NE )) or resid REMARK 3 104 through 105 or resid 107 through 113 REMARK 3 or resid 115 through 119 or (resid 120 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 121 REMARK 3 through 132 or resid 134 through 145 or REMARK 3 (resid 146 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 147 REMARK 3 through 157 or (resid 158 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 159 through 163 or (resid 164 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 165 through 188)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 49.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.05700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.54100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.78000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.54100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 47 NZ REMARK 470 LYS A 48 CE NZ REMARK 470 LEU A 50 CD2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CD CE NZ REMARK 470 ARG A 103 CZ NH1 NH2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 132 CD CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 LYS B 7 CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 48 NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 VAL B 54 CG2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 70 CE NZ REMARK 470 ASP B 86 OD2 REMARK 470 LYS B 118 CD CE NZ REMARK 470 LYS B 132 CD CE NZ REMARK 470 LYS B 140 CE NZ REMARK 470 GLN B 146 NE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CD CE NZ REMARK 470 GLN B 164 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 MET A 171 CA - CB - CG ANGL. DEV. = -19.9 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -81.16 -107.06 REMARK 500 LYS A 98 -60.15 -96.35 REMARK 500 LYS A 98 -63.24 -93.72 REMARK 500 LYS B 7 -84.92 -104.60 REMARK 500 LYS B 7 -83.60 -104.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 84.5 REMARK 620 3 HIS B 41 NE2 100.1 15.7 REMARK 620 4 Q2I B 502 N2 168.5 84.0 68.4 REMARK 620 5 HOH B 666 O 91.1 85.0 86.2 88.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH 1H-PYRROLE-3- REMARK 900 CARBOXYLIC ACID REMARK 900 RELATED ID: 8CZM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH 4-BROMO-1H-PYRAZOLE REMARK 900 RELATED ID: 8CXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH 1H-IMIDAZOLE REMARK 900 RELATED ID: 8CXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH PHENYLMETHANOL DBREF 8D10 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 8D10 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET Q2I A 201 8 HET CU B 501 1 HET Q2I B 502 8 HET Q2I B 503 16 HETNAM Q2I 1-(1-METHYL-1H-PYRAZOL-5-YL)METHANAMINE HETNAM CU COPPER (II) ION FORMUL 3 Q2I 3(C5 H9 N3) FORMUL 4 CU CU 2+ FORMUL 7 HOH *391(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N VAL B 155 O TYR B 159 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.10 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.11 LINK N ALA B 1 CU CU B 501 1555 1555 2.11 LINK O ALA B 1 CU CU B 501 1555 1555 2.07 LINK NE2 HIS B 41 CU CU B 501 1555 4546 2.09 LINK CU CU B 501 N2 Q2I B 502 1555 1555 2.22 LINK CU CU B 501 O HOH B 666 1555 4556 2.46 CISPEP 1 VAL A 150 PRO A 151 0 -6.06 CISPEP 2 VAL B 150 PRO B 151 0 -5.60 CRYST1 115.560 65.082 74.938 90.00 126.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008654 0.000000 0.006352 0.00000 SCALE2 0.000000 0.015365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016554 0.00000 MTRIX1 1 -0.949470 0.073674 0.305089 32.51440 1 MTRIX2 1 -0.310369 -0.075842 -0.947586 14.53250 1 MTRIX3 1 -0.046674 -0.994394 0.094876 18.84785 1