HEADER HYDROLASE 27-MAY-22 8D1T TITLE CRYSTAL STRUCTURE OF HUMAN USP30 IN COMPLEX WITH A COVALENT INHIBITOR TITLE 2 552 AND A FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 30,UBIQUITIN THIOESTERASE 30, COMPND 5 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 30,UB-SPECIFIC PROTEASE 30; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MOUSE ANTI-HUUSP30 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: MOUSE ANTI-HUUSP30 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS DEUBIQUITINASE, COVALENT INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,J.BUTLER,C.LI,K.ZHANG,D.ZHANG,Y.HAO REVDAT 2 25-OCT-23 8D1T 1 REMARK REVDAT 1 01-FEB-23 8D1T 0 JRNL AUTH X.SONG,J.BUTLER,C.LI,K.ZHANG,D.ZHANG,Y.HAO JRNL TITL TBD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7000 - 5.6200 1.00 2648 126 0.2284 0.2486 REMARK 3 2 5.6200 - 4.4600 1.00 2585 130 0.2074 0.2965 REMARK 3 3 4.4600 - 3.9000 1.00 2568 127 0.2186 0.2656 REMARK 3 4 3.9000 - 3.5400 1.00 2538 141 0.2380 0.3185 REMARK 3 5 3.5400 - 3.2900 0.99 2536 134 0.2895 0.3456 REMARK 3 6 3.2900 - 3.0900 1.00 2543 138 0.3113 0.3963 REMARK 3 7 3.0900 - 2.9400 0.98 2502 121 0.2827 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 41.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHK, 4M43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 22% PEG 4000, 4% REMARK 280 1,3-BUTANEDIOL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.86050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 63 REMARK 465 LYS A 64 REMARK 465 GLY A 65 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 GLN A 304 REMARK 465 GLN A 508 REMARK 465 GLY A 509 REMARK 465 PRO A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 GLU H 1 REMARK 465 LYS H 119 REMARK 465 GLY H 137 REMARK 465 GLU H 152 REMARK 465 LEU H 156 REMARK 465 THR H 157 REMARK 465 TRP H 158 REMARK 465 ASN H 159 REMARK 465 SER H 160 REMARK 465 GLY H 161 REMARK 465 SER H 162 REMARK 465 LEU H 163 REMARK 465 THR H 186 REMARK 465 VAL H 187 REMARK 465 THR H 188 REMARK 465 SER H 189 REMARK 465 SER H 190 REMARK 465 THR H 191 REMARK 465 TRP H 192 REMARK 465 PRO H 193 REMARK 465 SER H 194 REMARK 465 GLN H 195 REMARK 465 SER H 196 REMARK 465 ALA H 202 REMARK 465 HIS H 203 REMARK 465 PRO H 204 REMARK 465 VAL H 210 REMARK 465 ASP H 211 REMARK 465 LYS H 212 REMARK 465 LYS H 213 REMARK 465 ILE H 214 REMARK 465 GLY H 215 REMARK 465 GLY H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 TRP L 148 REMARK 465 LYS L 149 REMARK 465 ILE L 150 REMARK 465 ASP L 151 REMARK 465 GLY L 152 REMARK 465 SER L 153 REMARK 465 GLU L 154 REMARK 465 ARG L 155 REMARK 465 SER L 168 REMARK 465 LYS L 169 REMARK 465 TYR L 192 REMARK 465 THR L 193 REMARK 465 CYS L 194 REMARK 465 GLU L 195 REMARK 465 ALA L 196 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 106 CG OD1 OD2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 PHE L 139 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN L 166 OG SER L 171 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 434 OD2 ASP A 479 2555 2.07 REMARK 500 OD1 ASP A 175 NH1 ARG A 464 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 114 63.03 -116.78 REMARK 500 ARG A 151 21.83 -79.94 REMARK 500 GLU A 238 -7.95 68.47 REMARK 500 THR A 259 -82.04 -102.15 REMARK 500 LYS A 289 -117.59 -95.04 REMARK 500 ILE A 290 -77.00 58.93 REMARK 500 GLU A 291 -149.02 -161.20 REMARK 500 ALA A 292 6.37 -67.48 REMARK 500 SER A 331 -176.21 -69.91 REMARK 500 HIS A 333 51.41 -115.00 REMARK 500 ASP A 447 -152.86 -134.31 REMARK 500 HIS A 449 -52.41 66.11 REMARK 500 ASP A 478 -109.79 54.29 REMARK 500 ALA H 16 -151.36 -79.20 REMARK 500 SER H 25 -19.92 -146.69 REMARK 500 LYS H 67 -30.04 -142.74 REMARK 500 TYR H 102 -61.69 -94.19 REMARK 500 SER H 176 93.30 -173.05 REMARK 500 ASN L 28 108.30 -59.11 REMARK 500 LEU L 47 -60.35 -108.63 REMARK 500 ALA L 51 -32.37 71.66 REMARK 500 SER L 52 -9.67 -140.50 REMARK 500 ALA L 130 52.75 -160.78 REMARK 500 TYR L 140 -60.10 -96.53 REMARK 500 HIS L 189 56.52 -95.10 REMARK 500 PHE L 209 -34.03 -149.21 REMARK 500 ASN L 210 -123.19 23.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 308 DISTANCE = 8.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 CYS A 237 SG 102.9 REMARK 620 3 CYS A 284 SG 107.8 106.1 REMARK 620 4 CYS A 287 SG 124.9 108.2 105.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8D0A RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH A DIFFERENT COVALENT LIGAND. WILL BE FOR REMARK 900 THE SAME CITATION. DBREF 8D1T A 64 178 UNP Q70CQ3 UBP30_HUMAN 64 178 DBREF 8D1T A 217 357 UNP Q70CQ3 UBP30_HUMAN 217 357 DBREF 8D1T A 432 502 UNP Q70CQ3 UBP30_HUMAN 432 502 DBREF 8D1T H 1 222 PDB 8D1T 8D1T 1 222 DBREF 8D1T L 1 214 PDB 8D1T 8D1T 1 214 SEQADV 8D1T MET A 63 UNP Q70CQ3 INITIATING METHIONINE SEQADV 8D1T GLY A 179 UNP Q70CQ3 LINKER SEQADV 8D1T SER A 180 UNP Q70CQ3 LINKER SEQADV 8D1T GLY A 181 UNP Q70CQ3 LINKER SEQADV 8D1T SER A 182 UNP Q70CQ3 LINKER SEQADV 8D1T ASP A 348 UNP Q70CQ3 PHE 348 ENGINEERED MUTATION SEQADV 8D1T SER A 350 UNP Q70CQ3 MET 350 ENGINEERED MUTATION SEQADV 8D1T GLU A 353 UNP Q70CQ3 ILE 353 ENGINEERED MUTATION SEQADV 8D1T SER A 358 UNP Q70CQ3 LINKER SEQADV 8D1T ASN A 359 UNP Q70CQ3 LINKER SEQADV 8D1T ALA A 360 UNP Q70CQ3 LINKER SEQADV 8D1T LEU A 503 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T GLU A 504 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T VAL A 505 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T LEU A 506 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T PHE A 507 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T GLN A 508 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T GLY A 509 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T PRO A 510 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 511 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 512 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 513 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 514 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 515 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D1T HIS A 516 UNP Q70CQ3 EXPRESSION TAG SEQRES 1 A 349 MET LYS GLY LEU VAL PRO GLY LEU VAL ASN LEU GLY ASN SEQRES 2 A 349 THR CYS PHE MET ASN SER LEU LEU GLN GLY LEU SER ALA SEQRES 3 A 349 CYS PRO ALA PHE ILE ARG TRP LEU GLU GLU PHE THR SER SEQRES 4 A 349 GLN TYR SER ARG ASP GLN LYS GLU PRO PRO SER HIS GLN SEQRES 5 A 349 TYR LEU SER LEU THR LEU LEU HIS LEU LEU LYS ALA LEU SEQRES 6 A 349 SER CYS GLN GLU VAL THR ASP ASP GLU VAL LEU ASP ALA SEQRES 7 A 349 SER CYS LEU LEU ASP VAL LEU ARG MET TYR ARG TRP GLN SEQRES 8 A 349 ILE SER SER PHE GLU GLU GLN ASP ALA HIS GLU LEU PHE SEQRES 9 A 349 HIS VAL ILE THR SER SER LEU GLU ASP GLU ARG ASP GLY SEQRES 10 A 349 SER GLY SER HIS TRP LYS SER GLN HIS PRO PHE HIS GLY SEQRES 11 A 349 ARG LEU THR SER ASN MET VAL CYS LYS HIS CYS GLU HIS SEQRES 12 A 349 GLN SER PRO VAL ARG PHE ASP THR PHE ASP SER LEU SER SEQRES 13 A 349 LEU SER ILE PRO ALA ALA THR TRP GLY HIS PRO LEU THR SEQRES 14 A 349 LEU ASP HIS CYS LEU HIS HIS PHE ILE SER SER GLU SER SEQRES 15 A 349 VAL ARG ASP VAL VAL CYS ASP ASN CYS THR LYS ILE GLU SEQRES 16 A 349 ALA LYS GLY THR LEU ASN GLY GLU LYS VAL GLU HIS GLN SEQRES 17 A 349 ARG THR THR PHE VAL LYS GLN LEU LYS LEU GLY LYS LEU SEQRES 18 A 349 PRO GLN CYS LEU CYS ILE HIS LEU GLN ARG LEU SER TRP SEQRES 19 A 349 SER SER HIS GLY THR PRO LEU LYS ARG HIS GLU HIS VAL SEQRES 20 A 349 GLN PHE ASN GLU ASP LEU SER MET ASP GLU TYR LYS TYR SEQRES 21 A 349 HIS SER ASN ALA SER THR TYR LEU PHE ARG LEU MET ALA SEQRES 22 A 349 VAL VAL VAL HIS HIS GLY ASP MET HIS SER GLY HIS PHE SEQRES 23 A 349 VAL THR TYR ARG ARG SER PRO PRO SER ALA ARG ASN PRO SEQRES 24 A 349 LEU SER THR SER ASN GLN TRP LEU TRP VAL SER ASP ASP SEQRES 25 A 349 THR VAL ARG LYS ALA SER LEU GLN GLU VAL LEU SER SER SEQRES 26 A 349 SER ALA TYR LEU LEU PHE TYR GLU ARG VAL LEU GLU VAL SEQRES 27 A 349 LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS SEQRES 1 H 222 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 222 PRO GLY ALA SER VAL LYS LEU SER CYS THR GLY SER GLY SEQRES 3 H 222 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 222 PRO ALA ASN GLY ASN THR LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 222 GLY LYS ALA THR MET THR ALA ASP THR SER SER ASN THR SEQRES 7 H 222 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 222 ALA VAL TYR TYR CYS ALA ARG PRO ASP GLY TYR TYR GLY SEQRES 9 H 222 ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER SEQRES 10 H 222 ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 222 VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 222 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU SEQRES 13 H 222 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 222 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 222 SER SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SEQRES 16 H 222 SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 222 LYS VAL ASP LYS LYS ILE GLY GLY HIS HIS HIS HIS HIS SEQRES 18 H 222 HIS SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER GLN LYS PHE MET SER THR SEQRES 2 L 214 SER VAL GLY ASP ARG VAL SER VAL THR CYS LYS ALA SER SEQRES 3 L 214 GLN ASN VAL GLY THR ASN VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN SER PRO LYS ALA LEU ILE TYR SER ALA SER SEQRES 5 L 214 TYR ARG TYR SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ASN VAL SEQRES 7 L 214 GLN SER GLU ASP LEU ALA GLU TYR PHE CYS GLN GLN TYR SEQRES 8 L 214 ASN SER PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET PXW A 601 30 HET ZN A 602 1 HET EDO A 603 4 HETNAM PXW (1R,2R,4S,7E)-7-[AMINO(SULFANYL)METHYLIDENE]-2-{[(1P)- HETNAM 2 PXW 3-CHLORO-3'-(1-CYANOCYCLOPROPYL)[1,1'-BIPHENYL]-4- HETNAM 3 PXW CARBONYL]AMINO}-7-AZABICYCLO[2.2.1]HEPTAN-7-IUM HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 PXW C24 H24 CL N4 O S 1+ FORMUL 5 ZN ZN 2+ FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 THR A 76 SER A 87 1 12 HELIX 2 AA2 CYS A 89 THR A 100 1 12 HELIX 3 AA3 GLN A 114 LEU A 127 1 14 HELIX 4 AA4 ALA A 140 ARG A 148 1 9 HELIX 5 AA5 SER A 156 GLN A 160 5 5 HELIX 6 AA6 ASP A 161 GLY A 179 1 19 HELIX 7 AA7 LEU A 266 SER A 275 1 10 HELIX 8 AA8 ASP A 352 LYS A 355 5 4 HELIX 9 AA9 SER A 485 SER A 491 1 7 HELIX 10 AB1 ASN H 28 THR H 32 5 5 HELIX 11 AB2 THR H 87 THR H 91 5 5 HELIX 12 AB3 SER L 121 THR L 126 1 6 HELIX 13 AB4 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 2 GLY A 69 LEU A 70 0 SHEET 2 AA1 2 VAL A 137 LEU A 138 1 O LEU A 138 N GLY A 69 SHEET 1 AA2 4 ARG A 244 PHE A 248 0 SHEET 2 AA2 4 GLY A 226 CYS A 234 -1 N LEU A 228 O ASP A 246 SHEET 3 AA2 4 THR A 306 LYS A 316 -1 O GLN A 311 N ASN A 231 SHEET 4 AA2 4 SER A 278 VAL A 282 -1 N VAL A 282 O THR A 306 SHEET 1 AA3 5 LEU A 251 LEU A 253 0 SHEET 2 AA3 5 CYS A 320 LEU A 325 1 O HIS A 324 N LEU A 253 SHEET 3 AA3 5 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA3 5 LEU A 435 HIS A 445 -1 N MET A 439 O PHE A 498 SHEET 5 AA3 5 ASP A 348 SER A 350 -1 N LEU A 349 O PHE A 436 SHEET 1 AA4 7 LEU A 251 LEU A 253 0 SHEET 2 AA4 7 CYS A 320 LEU A 325 1 O HIS A 324 N LEU A 253 SHEET 3 AA4 7 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA4 7 LEU A 435 HIS A 445 -1 N MET A 439 O PHE A 498 SHEET 5 AA4 7 HIS A 452 ARG A 458 -1 O VAL A 454 N VAL A 443 SHEET 6 AA4 7 TRP A 473 SER A 477 -1 O VAL A 476 N THR A 455 SHEET 7 AA4 7 THR A 480 ALA A 484 -1 O ARG A 482 N TRP A 475 SHEET 1 AA5 2 LEU A 264 THR A 265 0 SHEET 2 AA5 2 VAL A 343 GLN A 344 1 O GLN A 344 N LEU A 264 SHEET 1 AA6 2 LEU A 328 TRP A 330 0 SHEET 2 AA6 2 PRO A 336 LYS A 338 -1 O LEU A 337 N SER A 329 SHEET 1 AA7 4 LEU H 4 GLN H 6 0 SHEET 2 AA7 4 SER H 17 GLY H 24 -1 O THR H 23 N GLN H 5 SHEET 3 AA7 4 THR H 78 SER H 84 -1 O LEU H 81 N LEU H 20 SHEET 4 AA7 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA8 6 GLU H 10 VAL H 12 0 SHEET 2 AA8 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA8 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 111 SHEET 4 AA8 6 MET H 34 ARG H 40 -1 N GLN H 39 O VAL H 93 SHEET 5 AA8 6 GLY H 44 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA8 6 THR H 58 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 AA9 4 GLU H 10 VAL H 12 0 SHEET 2 AA9 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA9 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 111 SHEET 4 AA9 4 TYR H 106 TRP H 107 -1 O TYR H 106 N ARG H 98 SHEET 1 AB1 4 SER H 124 PRO H 127 0 SHEET 2 AB1 4 LEU H 142 TYR H 149 -1 O LEU H 145 N TYR H 126 SHEET 3 AB1 4 TYR H 179 VAL H 185 -1 O TYR H 179 N TYR H 149 SHEET 4 AB1 4 HIS H 168 LEU H 174 -1 N HIS H 168 O SER H 184 SHEET 1 AB2 4 MET L 4 GLN L 6 0 SHEET 2 AB2 4 ARG L 18 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AB2 4 ASP L 70 SER L 76 -1 O ILE L 75 N VAL L 19 SHEET 4 AB2 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AB3 6 PHE L 10 THR L 13 0 SHEET 2 AB3 6 THR L 102 LEU L 106 1 O GLU L 105 N MET L 11 SHEET 3 AB3 6 GLU L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB3 6 VAL L 33 GLN L 38 -1 N GLN L 38 O GLU L 85 SHEET 5 AB3 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB3 6 TYR L 53 ARG L 54 -1 O TYR L 53 N TYR L 49 SHEET 1 AB4 4 THR L 114 PHE L 118 0 SHEET 2 AB4 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AB4 4 TYR L 173 THR L 182 -1 O SER L 177 N CYS L 134 SHEET 4 AB4 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 LINK SG CYS A 77 C28 PXW A 601 1555 1555 1.73 LINK SG CYS A 234 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 237 ZN ZN A 602 1555 1555 2.33 LINK SG CYS A 284 ZN ZN A 602 1555 1555 2.29 LINK SG CYS A 287 ZN ZN A 602 1555 1555 2.29 CISPEP 1 PHE H 150 PRO H 151 0 -2.20 CISPEP 2 PHE L 94 PRO L 95 0 0.45 CRYST1 41.879 71.721 148.630 90.00 93.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023878 0.000000 0.001661 0.00000 SCALE2 0.000000 0.013943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006744 0.00000