HEADER CHAPERONE 27-MAY-22 8D20 TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GRP78 IN COMPLEX WITH 5'- TITLE 2 METHYLTHIOADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE DNAK; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 57270; SOURCE 4 STRAIN: ISOLATE PALO ALTO / UGANDA; SOURCE 5 GENE: PFUGPA_02944; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.MROZEK,H.W.PARK REVDAT 3 13-DEC-23 8D20 1 JRNL REVDAT 2 25-OCT-23 8D20 1 REMARK REVDAT 1 31-MAY-23 8D20 0 JRNL AUTH A.MROZEK,T.ANTOSHCHENKO,Y.CHEN,C.ZEPEDA-VELAZQUEZ,D.SMIL, JRNL AUTH 2 N.KUMAR,H.LU,H.W.PARK JRNL TITL A NON-TRADITIONAL CRYSTAL-BASED COMPOUND SCREENING METHOD JRNL TITL 2 TARGETING THE ATP BINDING SITE OF PLASMODIUM FALCIPARUM JRNL TITL 3 GRP78 FOR IDENTIFICATION OF NOVEL NUCLEOSIDE ANALOGUES. JRNL REF FRONT MOL BIOSCI V. 9 56095 2022 JRNL REFN ESSN 2296-889X JRNL PMID 36275624 JRNL DOI 10.3389/FMOLB.2022.956095 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 42772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3090 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2960 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4184 ; 1.800 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6882 ; 1.466 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 6.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;36.371 ;23.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 571 ;14.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3522 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 2.315 ; 2.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1540 ; 2.314 ; 2.189 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1938 ; 2.925 ; 3.266 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1938 ; 2.925 ; 3.266 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 3.604 ; 2.638 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1539 ; 3.594 ; 2.635 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2235 ; 5.464 ; 3.774 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3516 ; 6.593 ;27.373 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3439 ; 6.558 ;27.008 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8D20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5212 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 37.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5UMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M (NH4)2SO4, 1.2 M LI2SO4, 0.1 M REMARK 280 NACITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 194.49867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.24933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.87400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.62467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 243.12333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 194.49867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 97.24933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.62467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 145.87400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 243.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 ILE A 26 REMARK 465 GLU A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 874 O HOH A 889 2.14 REMARK 500 O HOH A 650 O HOH A 656 2.14 REMARK 500 O HOH A 870 O HOH A 886 2.17 REMARK 500 NH1 ARG A 383 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 382 OD1 ASN A 382 8555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 199 CD GLU A 199 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 133 -4.31 76.39 REMARK 500 GLU A 213 -165.13 63.74 REMARK 500 ALA A 243 148.42 -173.21 REMARK 500 PHE A 376 35.14 -93.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 8D20 A 26 404 UNP W4J0F1 W4J0F1_PLAFP 26 404 SEQADV 8D20 MET A 8 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 9 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 10 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 11 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 12 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 13 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 HIS A 14 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 SER A 15 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 SER A 16 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 GLY A 17 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 ARG A 18 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 GLU A 19 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 ASN A 20 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 LEU A 21 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 TYR A 22 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 PHE A 23 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 GLN A 24 UNP W4J0F1 EXPRESSION TAG SEQADV 8D20 GLY A 25 UNP W4J0F1 EXPRESSION TAG SEQRES 1 A 397 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 397 LEU TYR PHE GLN GLY ILE GLU GLY PRO VAL ILE GLY ILE SEQRES 3 A 397 ASP LEU GLY THR THR TYR SER CYS VAL GLY VAL PHE LYS SEQRES 4 A 397 ASN GLY ARG VAL GLU ILE LEU ASN ASN GLU LEU GLY ASN SEQRES 5 A 397 ARG ILE THR PRO SER TYR VAL SER PHE VAL ASP GLY GLU SEQRES 6 A 397 ARG LYS VAL GLY GLU ALA ALA LYS LEU GLU ALA THR LEU SEQRES 7 A 397 HIS PRO THR GLN THR VAL PHE ASP VAL LYS ARG LEU ILE SEQRES 8 A 397 GLY ARG LYS PHE ASP ASP GLN GLU VAL VAL LYS ASP ARG SEQRES 9 A 397 SER LEU LEU PRO TYR GLU ILE VAL ASN ASN GLN GLY LYS SEQRES 10 A 397 PRO ASN ILE LYS VAL GLN ILE LYS ASP LYS ASP THR THR SEQRES 11 A 397 PHE ALA PRO GLU GLN ILE SER ALA MET VAL LEU GLU LYS SEQRES 12 A 397 MET LYS GLU ILE ALA GLN SER PHE LEU GLY LYS PRO VAL SEQRES 13 A 397 LYS ASN ALA VAL VAL THR VAL PRO ALA TYR PHE ASN ASP SEQRES 14 A 397 ALA GLN ARG GLN ALA THR LYS ASP ALA GLY THR ILE ALA SEQRES 15 A 397 GLY LEU ASN ILE VAL ARG ILE ILE ASN GLU PRO THR ALA SEQRES 16 A 397 ALA ALA LEU ALA TYR GLY LEU ASP LYS LYS GLU GLU THR SEQRES 17 A 397 SER ILE LEU VAL TYR ASP LEU GLY GLY GLY THR PHE ASP SEQRES 18 A 397 VAL SER ILE LEU VAL ILE ASP ASN GLY VAL PHE GLU VAL SEQRES 19 A 397 TYR ALA THR ALA GLY ASN THR HIS LEU GLY GLY GLU ASP SEQRES 20 A 397 PHE ASP GLN ARG VAL MET ASP TYR PHE ILE LYS MET PHE SEQRES 21 A 397 LYS LYS LYS ASN ASN ILE ASP LEU ARG THR ASP LYS ARG SEQRES 22 A 397 ALA ILE GLN LYS LEU ARG LYS GLU VAL GLU ILE ALA LYS SEQRES 23 A 397 ARG ASN LEU SER VAL VAL HIS SER THR GLN ILE GLU ILE SEQRES 24 A 397 GLU ASP ILE VAL GLU GLY HIS ASN PHE SER GLU THR LEU SEQRES 25 A 397 THR ARG ALA LYS PHE GLU GLU LEU ASN ASP ASP LEU PHE SEQRES 26 A 397 ARG GLU THR LEU GLU PRO VAL LYS LYS VAL LEU ASP ASP SEQRES 27 A 397 ALA LYS TYR GLU LYS SER LYS ILE ASP GLU ILE VAL LEU SEQRES 28 A 397 VAL GLY GLY SER THR ARG ILE PRO LYS ILE GLN GLN ILE SEQRES 29 A 397 ILE LYS GLU PHE PHE ASN GLY LYS GLU PRO ASN ARG GLY SEQRES 30 A 397 ILE ASN PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA ILE SEQRES 31 A 397 GLN ALA GLY ILE ILE LEU GLY HET MTA A 501 20 HET SO4 A 502 5 HET SO4 A 503 5 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM SO4 SULFATE ION FORMUL 2 MTA C11 H15 N5 O3 S FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 GLY A 76 ALA A 83 1 8 HELIX 2 AA2 HIS A 86 THR A 88 5 3 HELIX 3 AA3 VAL A 94 LEU A 97 5 4 HELIX 4 AA4 ASP A 104 LEU A 114 1 11 HELIX 5 AA5 ALA A 139 GLY A 160 1 22 HELIX 6 AA6 ASN A 175 ALA A 189 1 15 HELIX 7 AA7 GLU A 199 TYR A 207 1 9 HELIX 8 AA8 GLY A 251 ASN A 272 1 22 HELIX 9 AA9 ASP A 274 THR A 277 5 4 HELIX 10 AB1 ASP A 278 LEU A 296 1 19 HELIX 11 AB2 ARG A 321 THR A 335 1 15 HELIX 12 AB3 THR A 335 ALA A 346 1 12 HELIX 13 AB4 GLU A 349 ILE A 353 5 5 HELIX 14 AB5 GLY A 360 ARG A 364 5 5 HELIX 15 AB6 ILE A 365 PHE A 376 1 12 HELIX 16 AB7 GLU A 389 GLY A 404 1 16 SHEET 1 AA1 3 ARG A 49 ILE A 52 0 SHEET 2 AA1 3 TYR A 39 LYS A 46 -1 N VAL A 44 O GLU A 51 SHEET 3 AA1 3 THR A 62 PRO A 63 -1 O THR A 62 N SER A 40 SHEET 1 AA2 5 ARG A 49 ILE A 52 0 SHEET 2 AA2 5 TYR A 39 LYS A 46 -1 N VAL A 44 O GLU A 51 SHEET 3 AA2 5 VAL A 30 LEU A 35 -1 N GLY A 32 O GLY A 43 SHEET 4 AA2 5 ASN A 165 VAL A 170 1 O VAL A 167 N ILE A 33 SHEET 5 AA2 5 ASN A 192 ASN A 198 1 O ASN A 192 N ALA A 166 SHEET 1 AA3 3 GLU A 72 VAL A 75 0 SHEET 2 AA3 3 TYR A 65 VAL A 69 -1 N SER A 67 O LYS A 74 SHEET 3 AA3 3 THR A 90 PHE A 92 -1 O VAL A 91 N VAL A 66 SHEET 1 AA4 3 GLU A 117 ASN A 121 0 SHEET 2 AA4 3 LYS A 124 ILE A 131 -1 O LYS A 124 N ASN A 121 SHEET 3 AA4 3 LYS A 134 PHE A 138 -1 O PHE A 138 N ILE A 127 SHEET 1 AA5 5 VAL A 238 ASN A 247 0 SHEET 2 AA5 5 PHE A 227 ASP A 235 -1 N VAL A 233 O GLU A 240 SHEET 3 AA5 5 GLU A 214 LEU A 222 -1 N ILE A 217 O LEU A 232 SHEET 4 AA5 5 GLU A 355 VAL A 359 1 O VAL A 357 N LEU A 218 SHEET 5 AA5 5 ASN A 382 ARG A 383 1 O ASN A 382 N ILE A 356 SHEET 1 AA6 2 SER A 301 VAL A 310 0 SHEET 2 AA6 2 HIS A 313 THR A 320 -1 O GLU A 317 N ILE A 304 CRYST1 84.322 84.322 291.748 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011859 0.006847 0.000000 0.00000 SCALE2 0.000000 0.013694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003428 0.00000