data_8D28 # _entry.id 8D28 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8D28 pdb_00008d28 10.2210/pdb8d28/pdb WWPDB D_1000265880 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8D28 _pdbx_database_status.recvd_initial_deposition_date 2022-05-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Menichelli, E.' 1 ? 'Spraggon, G.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 119 _citation.language ? _citation.page_first e2213117119 _citation.page_last e2213117119 _citation.title 'Discovery of small molecules that target a tertiary-structured RNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2213117119 _citation.pdbx_database_id_PubMed 36413497 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Menichelli, E.' 1 ? primary 'Lam, B.J.' 2 0000-0001-6592-2098 primary 'Wang, Y.' 3 ? primary 'Wang, V.S.' 4 ? primary 'Shaffer, J.' 5 ? primary 'Tjhung, K.F.' 6 ? primary 'Bursulaya, B.' 7 ? primary 'Nguyen, T.N.' 8 ? primary 'Vo, T.' 9 ? primary 'Alper, P.B.' 10 ? primary 'McAllister, C.S.' 11 0000-0003-3483-4444 primary 'Jones, D.H.' 12 ? primary 'Spraggon, G.' 13 ? primary 'Michellys, P.Y.' 14 0000-0002-8660-9292 primary 'Joslin, J.' 15 0000-0002-6842-688X primary 'Joyce, G.F.' 16 0000-0003-0603-2874 primary 'Rogers, J.' 17 0000-0002-5364-2790 # _cell.angle_alpha 95.730 _cell.angle_alpha_esd ? _cell.angle_beta 90.090 _cell.angle_beta_esd ? _cell.angle_gamma 109.580 _cell.angle_gamma_esd ? _cell.entry_id 8D28 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.074 _cell.length_a_esd ? _cell.length_b 29.561 _cell.length_b_esd ? _cell.length_c 80.397 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8D28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (33-MER)' 10637.426 2 ? ? ? ? 2 non-polymer syn THEOPHYLLINE 180.164 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 5 water nat water 18.015 362 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 U n 1 7 A n 1 8 C n 1 9 C n 1 10 A n 1 11 G n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 C n 1 21 C n 1 22 C n 1 23 U n 1 24 U n 1 25 G n 1 26 G n 1 27 C n 1 28 A n 1 29 G n 1 30 C n 1 31 G n 1 32 C n 1 33 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8D28 _struct_ref.pdbx_db_accession 8D28 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8D28 B 1 ? 33 ? 8D28 1 ? 33 ? 1 33 2 1 8D28 A 1 ? 33 ? 8D28 1 ? 33 ? 1 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 TEP non-polymer . THEOPHYLLINE ? 'C7 H8 N4 O2' 180.164 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8D28 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium cacodylate, PEG 8000, 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-05-05 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97648 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97648 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.3 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8D28 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.42 _reflns.d_resolution_low 39.97 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35223 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.76 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.19 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 1.42 _reflns_shell.d_res_low 1.47 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3451 _reflns_shell.percent_possible_all 91.54 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.886 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 59.510 _refine.B_iso_mean 25.2168 _refine.B_iso_min 9.510 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8D28 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4200 _refine.ls_d_res_low 39.9700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35204 _refine.ls_number_reflns_R_free 1748 _refine.ls_number_reflns_R_work 33456 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.7700 _refine.ls_percent_reflns_R_free 4.9700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1755 _refine.ls_R_factor_R_free 0.2084 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1739 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.970 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1O15 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.8500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.4200 _refine_hist.d_res_low 39.9700 _refine_hist.number_atoms_solvent 362 _refine_hist.number_atoms_total 1821 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 66 _refine_hist.pdbx_B_iso_mean_ligand 17.77 _refine_hist.pdbx_B_iso_mean_solvent 30.96 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1408 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.4200 1.4600 2874 . 147 2727 91.0000 . . . 0.2599 0.0000 0.2390 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.4600 1.5100 2848 . 162 2686 92.0000 . . . 0.2342 0.0000 0.2213 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.5100 1.5600 2949 . 141 2808 93.0000 . . . 0.2125 0.0000 0.2058 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.5600 1.6300 2941 . 153 2788 94.0000 . . . 0.2420 0.0000 0.1968 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.6300 1.7000 2900 . 134 2766 94.0000 . . . 0.2218 0.0000 0.1935 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.7000 1.7900 2955 . 180 2775 93.0000 . . . 0.2258 0.0000 0.2013 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.7900 1.9000 2963 . 136 2827 94.0000 . . . 0.2160 0.0000 0.1868 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.9000 2.0500 2925 . 133 2792 94.0000 . . . 0.2017 0.0000 0.1847 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.0500 2.2500 2962 . 157 2805 94.0000 . . . 0.1768 0.0000 0.1753 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.2500 2.5800 2981 . 150 2831 95.0000 . . . 0.2505 0.0000 0.1872 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.5800 3.2500 2930 . 147 2783 94.0000 . . . 0.2041 0.0000 0.1743 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 3.2500 39.9700 2976 . 108 2868 95.0000 . . . 0.1804 0.0000 0.1405 . . . . . . . 12 . . . # _struct.entry_id 8D28 _struct.title 'Crystal structure of theophylline aptamer in complex with theophylline' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8D28 _struct_keywords.text 'RNA, aptamer, theophylline' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 2 ? K N N 4 ? L N N 3 ? M N N 4 ? N N N 5 ? O N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 6 O4 ? ? ? 1_555 H NA . NA ? ? B U 6 B NA 106 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc2 metalc ? ? A C 8 OP2 ? ? ? 1_555 F MG . MG ? ? B C 8 B MG 104 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc3 metalc ? ? A C 9 OP2 ? ? ? 1_555 F MG . MG ? ? B C 9 B MG 104 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc4 metalc ? ? A C 22 "O2'" ? ? ? 1_555 H NA . NA ? ? B C 22 B NA 106 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc5 metalc ? ? A U 23 OP2 ? ? ? 1_555 G MG . MG ? ? B U 23 B MG 105 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc6 metalc ? ? A U 23 "O2'" ? ? ? 1_555 I NA . NA ? ? B U 23 B NA 107 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc7 metalc ? ? A U 23 O2 ? ? ? 1_555 I NA . NA ? ? B U 23 B NA 107 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 102 B HOH 336 1_555 ? ? ? ? ? ? ? 1.957 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 102 B HOH 383 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 102 B HOH 389 1_555 ? ? ? ? ? ? ? 1.960 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 102 B HOH 398 1_555 ? ? ? ? ? ? ? 1.962 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 235 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 289 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 298 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 311 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 103 B HOH 313 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 104 B HOH 331 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 104 B HOH 347 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 105 B HOH 262 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 105 B HOH 275 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 105 B HOH 287 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 105 B HOH 305 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc23 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 105 B HOH 353 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc24 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 106 B HOH 303 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc25 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 106 B HOH 340 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc26 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 106 B HOH 345 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc27 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 107 B HOH 268 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc28 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 107 B HOH 316 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc29 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 107 B HOH 321 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc30 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 107 B HOH 350 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc31 metalc ? ? B U 6 O4 ? ? ? 1_555 M NA . NA ? ? A U 6 A NA 104 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc32 metalc ? ? B C 22 "O2'" ? ? ? 1_555 M NA . NA ? ? A C 22 A NA 104 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc33 metalc ? ? B U 23 "O2'" ? ? ? 1_555 K NA . NA ? ? A U 23 A NA 102 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc34 metalc ? ? B U 23 O2 ? ? ? 1_555 K NA . NA ? ? A U 23 A NA 102 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc35 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 102 A HOH 275 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc36 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 102 A HOH 290 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc37 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 102 A HOH 312 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc38 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 102 A HOH 335 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc39 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 228 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc40 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 234 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc41 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 258 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc42 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 268 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc43 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 296 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc44 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 104 A HOH 272 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc45 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 104 A HOH 297 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc46 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 104 A HOH 316 1_555 ? ? ? ? ? ? ? 2.396 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 33 N3 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 33 O2 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 33 N4 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 32 N3 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 32 O2 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 32 N4 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 31 N1 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 31 O6 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 31 N2 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 30 N3 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 30 O2 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 30 N4 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 5 N1 ? ? ? 1_555 B G 29 N1 ? ? A A 5 A G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? B A 5 N6 ? ? ? 1_555 B G 29 O6 ? ? A A 5 A G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? B U 6 N3 ? ? ? 1_555 B U 23 O4 ? ? A U 6 A U 23 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog16 hydrog ? ? B U 6 O2 ? ? ? 1_555 B A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 26 N1 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 26 O6 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 26 N2 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 25 N1 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 25 O6 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 25 N2 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B A 10 N6 ? ? ? 1_555 B C 21 O2 ? ? A A 10 A C 21 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog24 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 14 N2 ? ? ? 1_555 B A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog34 hydrog ? ? B U 23 N3 ? ? ? 1_555 B A 28 N7 ? ? A U 23 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog35 hydrog ? ? B U 23 O4 ? ? ? 1_555 B A 28 N6 ? ? A U 23 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 33 O2 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 33 N4 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 32 N3 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 32 O2 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 32 N4 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 30 N3 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 30 O2 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 30 N4 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 29 N1 ? ? B A 5 B G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog49 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 29 O6 ? ? B A 5 B G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog50 hydrog ? ? A U 6 N3 ? ? ? 1_555 A U 23 O4 ? ? B U 6 B U 23 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog51 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 28 N6 ? ? B U 6 B A 28 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog52 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 26 N1 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 26 O6 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 26 N2 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 25 N1 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 25 O6 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 25 N2 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 10 N6 ? ? ? 1_555 A C 21 O2 ? ? B A 10 B C 21 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 20 O2 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 20 N4 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? B G 14 B A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog69 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 28 N7 ? ? B U 23 B A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog70 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 28 N6 ? ? B U 23 B A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8D28 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.043339 _atom_sites.fract_transf_matrix[1][2] 0.015414 _atom_sites.fract_transf_matrix[1][3] 0.001720 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035904 _atom_sites.fract_transf_matrix[2][3] 0.003846 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012509 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 C 3 3 3 C C B . n A 1 4 G 4 4 4 G G B . n A 1 5 A 5 5 5 A A B . n A 1 6 U 6 6 6 U U B . n A 1 7 A 7 7 7 A A B . n A 1 8 C 8 8 8 C C B . n A 1 9 C 9 9 9 C C B . n A 1 10 A 10 10 10 A A B . n A 1 11 G 11 11 11 G G B . n A 1 12 C 12 12 12 C C B . n A 1 13 C 13 13 13 C C B . n A 1 14 G 14 14 14 G G B . n A 1 15 A 15 15 15 A A B . n A 1 16 A 16 16 16 A A B . n A 1 17 A 17 17 17 A A B . n A 1 18 G 18 18 18 G G B . n A 1 19 G 19 19 19 G G B . n A 1 20 C 20 20 20 C C B . n A 1 21 C 21 21 21 C C B . n A 1 22 C 22 22 22 C C B . n A 1 23 U 23 23 23 U U B . n A 1 24 U 24 24 24 U U B . n A 1 25 G 25 25 25 G G B . n A 1 26 G 26 26 26 G G B . n A 1 27 C 27 27 27 C C B . n A 1 28 A 28 28 28 A A B . n A 1 29 G 29 29 29 G G B . n A 1 30 C 30 30 30 C C B . n A 1 31 G 31 31 31 G G B . n A 1 32 C 32 32 32 C C B . n A 1 33 C 33 33 33 C C B . n B 1 1 G 1 1 1 G G A . n B 1 2 G 2 2 2 G G A . n B 1 3 C 3 3 3 C C A . n B 1 4 G 4 4 4 G G A . n B 1 5 A 5 5 5 A A A . n B 1 6 U 6 6 6 U U A . n B 1 7 A 7 7 7 A A A . n B 1 8 C 8 8 8 C C A . n B 1 9 C 9 9 9 C C A . n B 1 10 A 10 10 10 A A A . n B 1 11 G 11 11 11 G G A . n B 1 12 C 12 12 12 C C A . n B 1 13 C 13 13 13 C C A . n B 1 14 G 14 14 14 G G A . n B 1 15 A 15 15 15 A A A . n B 1 16 A 16 16 16 A A A . n B 1 17 A 17 17 17 A A A . n B 1 18 G 18 18 18 G G A . n B 1 19 G 19 19 19 G G A . n B 1 20 C 20 20 20 C C A . n B 1 21 C 21 21 21 C C A . n B 1 22 C 22 22 22 C C A . n B 1 23 U 23 23 23 U U A . n B 1 24 U 24 24 24 U U A . n B 1 25 G 25 25 25 G G A . n B 1 26 G 26 26 26 G G A . n B 1 27 C 27 27 27 C C A . n B 1 28 A 28 28 28 A A A . n B 1 29 G 29 29 29 G G A . n B 1 30 C 30 30 30 C C A . n B 1 31 G 31 31 31 G G A . n B 1 32 C 32 32 32 C C A . n B 1 33 C 33 33 33 C C A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email glen.spraggon@novartis.com _pdbx_contact_author.name_first Glen _pdbx_contact_author.name_last Spraggon _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7880-8454 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TEP 1 101 34 TEP TEP B . D 3 MG 1 102 2 MG MG B . E 3 MG 1 103 3 MG MG B . F 3 MG 1 104 5 MG MG B . G 3 MG 1 105 6 MG MG B . H 4 NA 1 106 7 NA NA B . I 4 NA 1 107 8 NA NA B . J 2 TEP 1 101 34 TEP TEP A . K 4 NA 1 102 1 NA NA A . L 3 MG 1 103 4 MG MG A . M 4 NA 1 104 9 NA NA A . N 5 HOH 1 201 134 HOH HOH B . N 5 HOH 2 202 257 HOH HOH B . N 5 HOH 3 203 50 HOH HOH B . N 5 HOH 4 204 211 HOH HOH B . N 5 HOH 5 205 166 HOH HOH B . N 5 HOH 6 206 315 HOH HOH B . N 5 HOH 7 207 361 HOH HOH B . N 5 HOH 8 208 253 HOH HOH B . N 5 HOH 9 209 101 HOH HOH B . N 5 HOH 10 210 209 HOH HOH B . N 5 HOH 11 211 60 HOH HOH B . N 5 HOH 12 212 268 HOH HOH B . N 5 HOH 13 213 182 HOH HOH B . N 5 HOH 14 214 174 HOH HOH B . N 5 HOH 15 215 208 HOH HOH B . N 5 HOH 16 216 187 HOH HOH B . N 5 HOH 17 217 27 HOH HOH B . N 5 HOH 18 218 135 HOH HOH B . N 5 HOH 19 219 116 HOH HOH B . N 5 HOH 20 220 301 HOH HOH B . N 5 HOH 21 221 160 HOH HOH B . N 5 HOH 22 222 163 HOH HOH B . N 5 HOH 23 223 239 HOH HOH B . N 5 HOH 24 224 104 HOH HOH B . N 5 HOH 25 225 360 HOH HOH B . N 5 HOH 26 226 219 HOH HOH B . N 5 HOH 27 227 61 HOH HOH B . N 5 HOH 28 228 298 HOH HOH B . N 5 HOH 29 229 355 HOH HOH B . N 5 HOH 30 230 248 HOH HOH B . N 5 HOH 31 231 97 HOH HOH B . N 5 HOH 32 232 110 HOH HOH B . N 5 HOH 33 233 56 HOH HOH B . N 5 HOH 34 234 177 HOH HOH B . N 5 HOH 35 235 3 HOH HOH B . N 5 HOH 36 236 126 HOH HOH B . N 5 HOH 37 237 255 HOH HOH B . N 5 HOH 38 238 259 HOH HOH B . N 5 HOH 39 239 28 HOH HOH B . N 5 HOH 40 240 310 HOH HOH B . N 5 HOH 41 241 137 HOH HOH B . N 5 HOH 42 242 200 HOH HOH B . N 5 HOH 43 243 341 HOH HOH B . N 5 HOH 44 244 183 HOH HOH B . N 5 HOH 45 245 351 HOH HOH B . N 5 HOH 46 246 179 HOH HOH B . N 5 HOH 47 247 161 HOH HOH B . N 5 HOH 48 248 42 HOH HOH B . N 5 HOH 49 249 93 HOH HOH B . N 5 HOH 50 250 139 HOH HOH B . N 5 HOH 51 251 193 HOH HOH B . N 5 HOH 52 252 12 HOH HOH B . N 5 HOH 53 253 59 HOH HOH B . N 5 HOH 54 254 147 HOH HOH B . N 5 HOH 55 255 78 HOH HOH B . N 5 HOH 56 256 358 HOH HOH B . N 5 HOH 57 257 316 HOH HOH B . N 5 HOH 58 258 184 HOH HOH B . N 5 HOH 59 259 138 HOH HOH B . N 5 HOH 60 260 145 HOH HOH B . N 5 HOH 61 261 18 HOH HOH B . N 5 HOH 62 262 31 HOH HOH B . N 5 HOH 63 263 180 HOH HOH B . N 5 HOH 64 264 92 HOH HOH B . N 5 HOH 65 265 272 HOH HOH B . N 5 HOH 66 266 69 HOH HOH B . N 5 HOH 67 267 202 HOH HOH B . N 5 HOH 68 268 40 HOH HOH B . N 5 HOH 69 269 26 HOH HOH B . N 5 HOH 70 270 52 HOH HOH B . N 5 HOH 71 271 88 HOH HOH B . N 5 HOH 72 272 87 HOH HOH B . N 5 HOH 73 273 344 HOH HOH B . N 5 HOH 74 274 64 HOH HOH B . N 5 HOH 75 275 53 HOH HOH B . N 5 HOH 76 276 55 HOH HOH B . N 5 HOH 77 277 72 HOH HOH B . N 5 HOH 78 278 23 HOH HOH B . N 5 HOH 79 279 191 HOH HOH B . N 5 HOH 80 280 128 HOH HOH B . N 5 HOH 81 281 46 HOH HOH B . N 5 HOH 82 282 67 HOH HOH B . N 5 HOH 83 283 195 HOH HOH B . N 5 HOH 84 284 123 HOH HOH B . N 5 HOH 85 285 331 HOH HOH B . N 5 HOH 86 286 45 HOH HOH B . N 5 HOH 87 287 296 HOH HOH B . N 5 HOH 88 288 291 HOH HOH B . N 5 HOH 89 289 13 HOH HOH B . N 5 HOH 90 290 229 HOH HOH B . N 5 HOH 91 291 51 HOH HOH B . N 5 HOH 92 292 167 HOH HOH B . N 5 HOH 93 293 4 HOH HOH B . N 5 HOH 94 294 71 HOH HOH B . N 5 HOH 95 295 1 HOH HOH B . N 5 HOH 96 296 271 HOH HOH B . N 5 HOH 97 297 144 HOH HOH B . N 5 HOH 98 298 30 HOH HOH B . N 5 HOH 99 299 170 HOH HOH B . N 5 HOH 100 300 111 HOH HOH B . N 5 HOH 101 301 17 HOH HOH B . N 5 HOH 102 302 335 HOH HOH B . N 5 HOH 103 303 35 HOH HOH B . N 5 HOH 104 304 189 HOH HOH B . N 5 HOH 105 305 62 HOH HOH B . N 5 HOH 106 306 95 HOH HOH B . N 5 HOH 107 307 353 HOH HOH B . N 5 HOH 108 308 213 HOH HOH B . N 5 HOH 109 309 175 HOH HOH B . N 5 HOH 110 310 84 HOH HOH B . N 5 HOH 111 311 15 HOH HOH B . N 5 HOH 112 312 125 HOH HOH B . N 5 HOH 113 313 24 HOH HOH B . N 5 HOH 114 314 362 HOH HOH B . N 5 HOH 115 315 159 HOH HOH B . N 5 HOH 116 316 19 HOH HOH B . N 5 HOH 117 317 194 HOH HOH B . N 5 HOH 118 318 307 HOH HOH B . N 5 HOH 119 319 49 HOH HOH B . N 5 HOH 120 320 131 HOH HOH B . N 5 HOH 121 321 6 HOH HOH B . N 5 HOH 122 322 261 HOH HOH B . N 5 HOH 123 323 237 HOH HOH B . N 5 HOH 124 324 164 HOH HOH B . N 5 HOH 125 325 168 HOH HOH B . N 5 HOH 126 326 342 HOH HOH B . N 5 HOH 127 327 73 HOH HOH B . N 5 HOH 128 328 216 HOH HOH B . N 5 HOH 129 329 63 HOH HOH B . N 5 HOH 130 330 283 HOH HOH B . N 5 HOH 131 331 169 HOH HOH B . N 5 HOH 132 332 234 HOH HOH B . N 5 HOH 133 333 233 HOH HOH B . N 5 HOH 134 334 79 HOH HOH B . N 5 HOH 135 335 186 HOH HOH B . N 5 HOH 136 336 83 HOH HOH B . N 5 HOH 137 337 314 HOH HOH B . N 5 HOH 138 338 102 HOH HOH B . N 5 HOH 139 339 312 HOH HOH B . N 5 HOH 140 340 29 HOH HOH B . N 5 HOH 141 341 37 HOH HOH B . N 5 HOH 142 342 228 HOH HOH B . N 5 HOH 143 343 309 HOH HOH B . N 5 HOH 144 344 349 HOH HOH B . N 5 HOH 145 345 22 HOH HOH B . N 5 HOH 146 346 185 HOH HOH B . N 5 HOH 147 347 330 HOH HOH B . N 5 HOH 148 348 203 HOH HOH B . N 5 HOH 149 349 333 HOH HOH B . N 5 HOH 150 350 34 HOH HOH B . N 5 HOH 151 351 289 HOH HOH B . N 5 HOH 152 352 218 HOH HOH B . N 5 HOH 153 353 201 HOH HOH B . N 5 HOH 154 354 329 HOH HOH B . N 5 HOH 155 355 338 HOH HOH B . N 5 HOH 156 356 326 HOH HOH B . N 5 HOH 157 357 188 HOH HOH B . N 5 HOH 158 358 308 HOH HOH B . N 5 HOH 159 359 122 HOH HOH B . N 5 HOH 160 360 359 HOH HOH B . N 5 HOH 161 361 133 HOH HOH B . N 5 HOH 162 362 230 HOH HOH B . N 5 HOH 163 363 124 HOH HOH B . N 5 HOH 164 364 269 HOH HOH B . N 5 HOH 165 365 290 HOH HOH B . N 5 HOH 166 366 220 HOH HOH B . N 5 HOH 167 367 324 HOH HOH B . N 5 HOH 168 368 275 HOH HOH B . N 5 HOH 169 369 105 HOH HOH B . N 5 HOH 170 370 148 HOH HOH B . N 5 HOH 171 371 86 HOH HOH B . N 5 HOH 172 372 278 HOH HOH B . N 5 HOH 173 373 107 HOH HOH B . N 5 HOH 174 374 243 HOH HOH B . N 5 HOH 175 375 319 HOH HOH B . N 5 HOH 176 376 277 HOH HOH B . N 5 HOH 177 377 242 HOH HOH B . N 5 HOH 178 378 300 HOH HOH B . N 5 HOH 179 379 340 HOH HOH B . N 5 HOH 180 380 311 HOH HOH B . N 5 HOH 181 381 149 HOH HOH B . N 5 HOH 182 382 115 HOH HOH B . N 5 HOH 183 383 244 HOH HOH B . N 5 HOH 184 384 155 HOH HOH B . N 5 HOH 185 385 270 HOH HOH B . N 5 HOH 186 386 357 HOH HOH B . N 5 HOH 187 387 154 HOH HOH B . N 5 HOH 188 388 328 HOH HOH B . N 5 HOH 189 389 322 HOH HOH B . N 5 HOH 190 390 285 HOH HOH B . N 5 HOH 191 391 288 HOH HOH B . N 5 HOH 192 392 258 HOH HOH B . N 5 HOH 193 393 141 HOH HOH B . N 5 HOH 194 394 276 HOH HOH B . N 5 HOH 195 395 267 HOH HOH B . N 5 HOH 196 396 352 HOH HOH B . N 5 HOH 197 397 313 HOH HOH B . N 5 HOH 198 398 225 HOH HOH B . N 5 HOH 199 399 295 HOH HOH B . N 5 HOH 200 400 334 HOH HOH B . N 5 HOH 201 401 132 HOH HOH B . O 5 HOH 1 201 303 HOH HOH A . O 5 HOH 2 202 129 HOH HOH A . O 5 HOH 3 203 354 HOH HOH A . O 5 HOH 4 204 245 HOH HOH A . O 5 HOH 5 205 210 HOH HOH A . O 5 HOH 6 206 336 HOH HOH A . O 5 HOH 7 207 292 HOH HOH A . O 5 HOH 8 208 114 HOH HOH A . O 5 HOH 9 209 158 HOH HOH A . O 5 HOH 10 210 108 HOH HOH A . O 5 HOH 11 211 100 HOH HOH A . O 5 HOH 12 212 172 HOH HOH A . O 5 HOH 13 213 118 HOH HOH A . O 5 HOH 14 214 332 HOH HOH A . O 5 HOH 15 215 280 HOH HOH A . O 5 HOH 16 216 181 HOH HOH A . O 5 HOH 17 217 318 HOH HOH A . O 5 HOH 18 218 119 HOH HOH A . O 5 HOH 19 219 281 HOH HOH A . O 5 HOH 20 220 227 HOH HOH A . O 5 HOH 21 221 223 HOH HOH A . O 5 HOH 22 222 266 HOH HOH A . O 5 HOH 23 223 212 HOH HOH A . O 5 HOH 24 224 121 HOH HOH A . O 5 HOH 25 225 207 HOH HOH A . O 5 HOH 26 226 94 HOH HOH A . O 5 HOH 27 227 287 HOH HOH A . O 5 HOH 28 228 14 HOH HOH A . O 5 HOH 29 229 8 HOH HOH A . O 5 HOH 30 230 299 HOH HOH A . O 5 HOH 31 231 143 HOH HOH A . O 5 HOH 32 232 173 HOH HOH A . O 5 HOH 33 233 82 HOH HOH A . O 5 HOH 34 234 16 HOH HOH A . O 5 HOH 35 235 47 HOH HOH A . O 5 HOH 36 236 221 HOH HOH A . O 5 HOH 37 237 192 HOH HOH A . O 5 HOH 38 238 190 HOH HOH A . O 5 HOH 39 239 217 HOH HOH A . O 5 HOH 40 240 85 HOH HOH A . O 5 HOH 41 241 2 HOH HOH A . O 5 HOH 42 242 7 HOH HOH A . O 5 HOH 43 243 176 HOH HOH A . O 5 HOH 44 244 117 HOH HOH A . O 5 HOH 45 245 302 HOH HOH A . O 5 HOH 46 246 153 HOH HOH A . O 5 HOH 47 247 70 HOH HOH A . O 5 HOH 48 248 274 HOH HOH A . O 5 HOH 49 249 75 HOH HOH A . O 5 HOH 50 250 222 HOH HOH A . O 5 HOH 51 251 33 HOH HOH A . O 5 HOH 52 252 54 HOH HOH A . O 5 HOH 53 253 249 HOH HOH A . O 5 HOH 54 254 80 HOH HOH A . O 5 HOH 55 255 21 HOH HOH A . O 5 HOH 56 256 178 HOH HOH A . O 5 HOH 57 257 10 HOH HOH A . O 5 HOH 58 258 36 HOH HOH A . O 5 HOH 59 259 77 HOH HOH A . O 5 HOH 60 260 215 HOH HOH A . O 5 HOH 61 261 327 HOH HOH A . O 5 HOH 62 262 150 HOH HOH A . O 5 HOH 63 263 89 HOH HOH A . O 5 HOH 64 264 343 HOH HOH A . O 5 HOH 65 265 106 HOH HOH A . O 5 HOH 66 266 5 HOH HOH A . O 5 HOH 67 267 304 HOH HOH A . O 5 HOH 68 268 38 HOH HOH A . O 5 HOH 69 269 25 HOH HOH A . O 5 HOH 70 270 44 HOH HOH A . O 5 HOH 71 271 156 HOH HOH A . O 5 HOH 72 272 32 HOH HOH A . O 5 HOH 73 273 262 HOH HOH A . O 5 HOH 74 274 323 HOH HOH A . O 5 HOH 75 275 48 HOH HOH A . O 5 HOH 76 276 321 HOH HOH A . O 5 HOH 77 277 264 HOH HOH A . O 5 HOH 78 278 109 HOH HOH A . O 5 HOH 79 279 57 HOH HOH A . O 5 HOH 80 280 157 HOH HOH A . O 5 HOH 81 281 162 HOH HOH A . O 5 HOH 82 282 240 HOH HOH A . O 5 HOH 83 283 235 HOH HOH A . O 5 HOH 84 284 231 HOH HOH A . O 5 HOH 85 285 81 HOH HOH A . O 5 HOH 86 286 232 HOH HOH A . O 5 HOH 87 287 112 HOH HOH A . O 5 HOH 88 288 127 HOH HOH A . O 5 HOH 89 289 20 HOH HOH A . O 5 HOH 90 290 66 HOH HOH A . O 5 HOH 91 291 238 HOH HOH A . O 5 HOH 92 292 151 HOH HOH A . O 5 HOH 93 293 282 HOH HOH A . O 5 HOH 94 294 99 HOH HOH A . O 5 HOH 95 295 91 HOH HOH A . O 5 HOH 96 296 39 HOH HOH A . O 5 HOH 97 297 11 HOH HOH A . O 5 HOH 98 298 205 HOH HOH A . O 5 HOH 99 299 206 HOH HOH A . O 5 HOH 100 300 140 HOH HOH A . O 5 HOH 101 301 9 HOH HOH A . O 5 HOH 102 302 224 HOH HOH A . O 5 HOH 103 303 58 HOH HOH A . O 5 HOH 104 304 256 HOH HOH A . O 5 HOH 105 305 241 HOH HOH A . O 5 HOH 106 306 286 HOH HOH A . O 5 HOH 107 307 142 HOH HOH A . O 5 HOH 108 308 130 HOH HOH A . O 5 HOH 109 309 120 HOH HOH A . O 5 HOH 110 310 96 HOH HOH A . O 5 HOH 111 311 65 HOH HOH A . O 5 HOH 112 312 43 HOH HOH A . O 5 HOH 113 313 68 HOH HOH A . O 5 HOH 114 314 74 HOH HOH A . O 5 HOH 115 315 250 HOH HOH A . O 5 HOH 116 316 41 HOH HOH A . O 5 HOH 117 317 346 HOH HOH A . O 5 HOH 118 318 226 HOH HOH A . O 5 HOH 119 319 306 HOH HOH A . O 5 HOH 120 320 247 HOH HOH A . O 5 HOH 121 321 251 HOH HOH A . O 5 HOH 122 322 196 HOH HOH A . O 5 HOH 123 323 350 HOH HOH A . O 5 HOH 124 324 236 HOH HOH A . O 5 HOH 125 325 252 HOH HOH A . O 5 HOH 126 326 103 HOH HOH A . O 5 HOH 127 327 265 HOH HOH A . O 5 HOH 128 328 297 HOH HOH A . O 5 HOH 129 329 90 HOH HOH A . O 5 HOH 130 330 246 HOH HOH A . O 5 HOH 131 331 165 HOH HOH A . O 5 HOH 132 332 199 HOH HOH A . O 5 HOH 133 333 273 HOH HOH A . O 5 HOH 134 334 214 HOH HOH A . O 5 HOH 135 335 76 HOH HOH A . O 5 HOH 136 336 98 HOH HOH A . O 5 HOH 137 337 348 HOH HOH A . O 5 HOH 138 338 347 HOH HOH A . O 5 HOH 139 339 339 HOH HOH A . O 5 HOH 140 340 263 HOH HOH A . O 5 HOH 141 341 171 HOH HOH A . O 5 HOH 142 342 284 HOH HOH A . O 5 HOH 143 343 305 HOH HOH A . O 5 HOH 144 344 356 HOH HOH A . O 5 HOH 145 345 113 HOH HOH A . O 5 HOH 146 346 197 HOH HOH A . O 5 HOH 147 347 136 HOH HOH A . O 5 HOH 148 348 146 HOH HOH A . O 5 HOH 149 349 152 HOH HOH A . O 5 HOH 150 350 325 HOH HOH A . O 5 HOH 151 351 320 HOH HOH A . O 5 HOH 152 352 254 HOH HOH A . O 5 HOH 153 353 345 HOH HOH A . O 5 HOH 154 354 198 HOH HOH A . O 5 HOH 155 355 279 HOH HOH A . O 5 HOH 156 356 317 HOH HOH A . O 5 HOH 157 357 294 HOH HOH A . O 5 HOH 158 358 293 HOH HOH A . O 5 HOH 159 359 204 HOH HOH A . O 5 HOH 160 360 260 HOH HOH A . O 5 HOH 161 361 337 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,N 2 1 B,J,K,L,M,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 6 ? B U 6 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 "O2'" ? A C 22 ? B C 22 ? 1_555 94.9 ? 2 O4 ? A U 6 ? B U 6 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 303 ? 1_555 172.0 ? 3 "O2'" ? A C 22 ? B C 22 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 303 ? 1_555 92.5 ? 4 O4 ? A U 6 ? B U 6 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 340 ? 1_555 100.8 ? 5 "O2'" ? A C 22 ? B C 22 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 340 ? 1_555 88.4 ? 6 O ? N HOH . ? B HOH 303 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 340 ? 1_555 82.6 ? 7 O4 ? A U 6 ? B U 6 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 345 ? 1_555 94.0 ? 8 "O2'" ? A C 22 ? B C 22 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 345 ? 1_555 93.2 ? 9 O ? N HOH . ? B HOH 303 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 345 ? 1_555 82.3 ? 10 O ? N HOH . ? B HOH 340 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? N HOH . ? B HOH 345 ? 1_555 164.9 ? 11 OP2 ? A C 8 ? B C 8 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 OP2 ? A C 9 ? B C 9 ? 1_555 91.3 ? 12 OP2 ? A C 8 ? B C 8 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? N HOH . ? B HOH 331 ? 1_555 90.0 ? 13 OP2 ? A C 9 ? B C 9 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? N HOH . ? B HOH 331 ? 1_555 89.2 ? 14 OP2 ? A C 8 ? B C 8 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? N HOH . ? B HOH 347 ? 1_555 169.3 ? 15 OP2 ? A C 9 ? B C 9 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? N HOH . ? B HOH 347 ? 1_555 83.0 ? 16 O ? N HOH . ? B HOH 331 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? N HOH . ? B HOH 347 ? 1_555 80.9 ? 17 OP2 ? A U 23 ? B U 23 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 262 ? 1_555 167.4 ? 18 OP2 ? A U 23 ? B U 23 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 275 ? 1_555 79.3 ? 19 O ? N HOH . ? B HOH 262 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 275 ? 1_555 88.1 ? 20 OP2 ? A U 23 ? B U 23 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 287 ? 1_555 86.3 ? 21 O ? N HOH . ? B HOH 262 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 287 ? 1_555 91.6 ? 22 O ? N HOH . ? B HOH 275 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 287 ? 1_555 80.4 ? 23 OP2 ? A U 23 ? B U 23 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 305 ? 1_555 94.3 ? 24 O ? N HOH . ? B HOH 262 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 305 ? 1_555 87.5 ? 25 O ? N HOH . ? B HOH 275 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 305 ? 1_555 98.5 ? 26 O ? N HOH . ? B HOH 287 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 305 ? 1_555 178.5 ? 27 OP2 ? A U 23 ? B U 23 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 353 ? 1_555 91.5 ? 28 O ? N HOH . ? B HOH 262 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 353 ? 1_555 101.1 ? 29 O ? N HOH . ? B HOH 275 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 353 ? 1_555 170.8 ? 30 O ? N HOH . ? B HOH 287 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 353 ? 1_555 99.1 ? 31 O ? N HOH . ? B HOH 305 ? 1_555 MG ? G MG . ? B MG 105 ? 1_555 O ? N HOH . ? B HOH 353 ? 1_555 82.2 ? 32 "O2'" ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O2 ? A U 23 ? B U 23 ? 1_555 94.6 ? 33 "O2'" ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 268 ? 1_555 89.6 ? 34 O2 ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 268 ? 1_555 84.7 ? 35 "O2'" ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 316 ? 1_555 79.4 ? 36 O2 ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 316 ? 1_555 87.6 ? 37 O ? N HOH . ? B HOH 268 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 316 ? 1_555 166.0 ? 38 "O2'" ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 321 ? 1_555 162.8 ? 39 O2 ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 321 ? 1_555 93.0 ? 40 O ? N HOH . ? B HOH 268 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 321 ? 1_555 106.5 ? 41 O ? N HOH . ? B HOH 316 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 321 ? 1_555 85.5 ? 42 "O2'" ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 350 ? 1_555 83.0 ? 43 O2 ? A U 23 ? B U 23 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 350 ? 1_555 173.2 ? 44 O ? N HOH . ? B HOH 268 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 350 ? 1_555 88.9 ? 45 O ? N HOH . ? B HOH 316 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 350 ? 1_555 98.1 ? 46 O ? N HOH . ? B HOH 321 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O ? N HOH . ? B HOH 350 ? 1_555 91.1 ? 47 O ? N HOH . ? B HOH 336 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 383 ? 1_555 82.9 ? 48 O ? N HOH . ? B HOH 336 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 389 ? 1_555 167.3 ? 49 O ? N HOH . ? B HOH 383 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 389 ? 1_555 89.6 ? 50 O ? N HOH . ? B HOH 336 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 398 ? 1_555 95.4 ? 51 O ? N HOH . ? B HOH 383 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 398 ? 1_555 160.8 ? 52 O ? N HOH . ? B HOH 389 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? N HOH . ? B HOH 398 ? 1_555 88.3 ? 53 O ? N HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 289 ? 1_555 96.3 ? 54 O ? N HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 298 ? 1_555 89.1 ? 55 O ? N HOH . ? B HOH 289 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 298 ? 1_555 174.2 ? 56 O ? N HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 311 ? 1_555 175.2 ? 57 O ? N HOH . ? B HOH 289 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 311 ? 1_555 88.4 ? 58 O ? N HOH . ? B HOH 298 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 311 ? 1_555 86.1 ? 59 O ? N HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 313 ? 1_555 92.6 ? 60 O ? N HOH . ? B HOH 289 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 313 ? 1_555 87.6 ? 61 O ? N HOH . ? B HOH 298 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 313 ? 1_555 90.2 ? 62 O ? N HOH . ? B HOH 311 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? N HOH . ? B HOH 313 ? 1_555 86.8 ? 63 O4 ? B U 6 ? A U 6 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 "O2'" ? B C 22 ? A C 22 ? 1_555 96.2 ? 64 O4 ? B U 6 ? A U 6 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 272 ? 1_555 172.3 ? 65 "O2'" ? B C 22 ? A C 22 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 272 ? 1_555 89.2 ? 66 O4 ? B U 6 ? A U 6 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 297 ? 1_555 102.8 ? 67 "O2'" ? B C 22 ? A C 22 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 297 ? 1_555 92.9 ? 68 O ? O HOH . ? A HOH 272 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 297 ? 1_555 82.3 ? 69 O4 ? B U 6 ? A U 6 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 316 ? 1_555 91.6 ? 70 "O2'" ? B C 22 ? A C 22 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 316 ? 1_555 91.1 ? 71 O ? O HOH . ? A HOH 272 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 316 ? 1_555 82.8 ? 72 O ? O HOH . ? A HOH 297 ? 1_555 NA ? M NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 316 ? 1_555 164.5 ? 73 "O2'" ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O2 ? B U 23 ? A U 23 ? 1_555 93.5 ? 74 "O2'" ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 275 ? 1_555 78.6 ? 75 O2 ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 275 ? 1_555 84.3 ? 76 "O2'" ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 290 ? 1_555 91.7 ? 77 O2 ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 290 ? 1_555 85.4 ? 78 O ? O HOH . ? A HOH 275 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 290 ? 1_555 165.3 ? 79 "O2'" ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 312 ? 1_555 163.5 ? 80 O2 ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 312 ? 1_555 91.9 ? 81 O ? O HOH . ? A HOH 275 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 312 ? 1_555 86.5 ? 82 O ? O HOH . ? A HOH 290 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 312 ? 1_555 104.3 ? 83 "O2'" ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 335 ? 1_555 85.7 ? 84 O2 ? B U 23 ? A U 23 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 335 ? 1_555 173.8 ? 85 O ? O HOH . ? A HOH 275 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 335 ? 1_555 101.5 ? 86 O ? O HOH . ? A HOH 290 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 335 ? 1_555 88.5 ? 87 O ? O HOH . ? A HOH 312 ? 1_555 NA ? K NA . ? A NA 102 ? 1_555 O ? O HOH . ? A HOH 335 ? 1_555 90.5 ? 88 O ? O HOH . ? A HOH 228 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 90.0 ? 89 O ? O HOH . ? A HOH 228 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 258 ? 1_555 178.1 ? 90 O ? O HOH . ? A HOH 234 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 258 ? 1_555 90.4 ? 91 O ? O HOH . ? A HOH 228 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 268 ? 1_555 88.7 ? 92 O ? O HOH . ? A HOH 234 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 268 ? 1_555 86.0 ? 93 O ? O HOH . ? A HOH 258 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 268 ? 1_555 89.5 ? 94 O ? O HOH . ? A HOH 228 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 296 ? 1_555 91.0 ? 95 O ? O HOH . ? A HOH 234 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 296 ? 1_555 178.9 ? 96 O ? O HOH . ? A HOH 258 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 296 ? 1_555 88.6 ? 97 O ? O HOH . ? A HOH 268 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 296 ? 1_555 93.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-30 2 'Structure model' 1 1 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17_3644 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 8D28 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 259 ? ? O A HOH 231 ? ? 1.93 2 1 O B HOH 236 ? ? O A HOH 265 ? ? 2.03 3 1 O B HOH 367 ? ? O B HOH 401 ? ? 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 24 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 24 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 24 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.47 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.97 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 NA NA NA N N 115 TEP C1 C N N 116 TEP N1 N Y N 117 TEP C2 C Y N 118 TEP O2 O N N 119 TEP N3 N Y N 120 TEP C3 C N N 121 TEP C4 C Y N 122 TEP C5 C Y N 123 TEP C6 C Y N 124 TEP O6 O N N 125 TEP N7 N Y N 126 TEP C8 C Y N 127 TEP N9 N Y N 128 TEP H11 H N N 129 TEP H12 H N N 130 TEP H13 H N N 131 TEP H31 H N N 132 TEP H32 H N N 133 TEP H33 H N N 134 TEP HN7 H N N 135 TEP H8 H N N 136 U OP3 O N N 137 U P P N N 138 U OP1 O N N 139 U OP2 O N N 140 U "O5'" O N N 141 U "C5'" C N N 142 U "C4'" C N R 143 U "O4'" O N N 144 U "C3'" C N S 145 U "O3'" O N N 146 U "C2'" C N R 147 U "O2'" O N N 148 U "C1'" C N R 149 U N1 N N N 150 U C2 C N N 151 U O2 O N N 152 U N3 N N N 153 U C4 C N N 154 U O4 O N N 155 U C5 C N N 156 U C6 C N N 157 U HOP3 H N N 158 U HOP2 H N N 159 U "H5'" H N N 160 U "H5''" H N N 161 U "H4'" H N N 162 U "H3'" H N N 163 U "HO3'" H N N 164 U "H2'" H N N 165 U "HO2'" H N N 166 U "H1'" H N N 167 U H3 H N N 168 U H5 H N N 169 U H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 TEP C1 N1 sing N N 118 TEP C1 H11 sing N N 119 TEP C1 H12 sing N N 120 TEP C1 H13 sing N N 121 TEP N1 C2 sing Y N 122 TEP N1 C6 sing Y N 123 TEP C2 O2 doub N N 124 TEP C2 N3 sing Y N 125 TEP N3 C3 sing N N 126 TEP N3 C4 sing Y N 127 TEP C3 H31 sing N N 128 TEP C3 H32 sing N N 129 TEP C3 H33 sing N N 130 TEP C4 C5 doub Y N 131 TEP C4 N9 sing Y N 132 TEP C5 C6 sing Y N 133 TEP C5 N7 sing Y N 134 TEP C6 O6 doub N N 135 TEP N7 C8 sing Y N 136 TEP N7 HN7 sing N N 137 TEP C8 N9 doub Y N 138 TEP C8 H8 sing N N 139 U OP3 P sing N N 140 U OP3 HOP3 sing N N 141 U P OP1 doub N N 142 U P OP2 sing N N 143 U P "O5'" sing N N 144 U OP2 HOP2 sing N N 145 U "O5'" "C5'" sing N N 146 U "C5'" "C4'" sing N N 147 U "C5'" "H5'" sing N N 148 U "C5'" "H5''" sing N N 149 U "C4'" "O4'" sing N N 150 U "C4'" "C3'" sing N N 151 U "C4'" "H4'" sing N N 152 U "O4'" "C1'" sing N N 153 U "C3'" "O3'" sing N N 154 U "C3'" "C2'" sing N N 155 U "C3'" "H3'" sing N N 156 U "O3'" "HO3'" sing N N 157 U "C2'" "O2'" sing N N 158 U "C2'" "C1'" sing N N 159 U "C2'" "H2'" sing N N 160 U "O2'" "HO2'" sing N N 161 U "C1'" N1 sing N N 162 U "C1'" "H1'" sing N N 163 U N1 C2 sing N N 164 U N1 C6 sing N N 165 U C2 O2 doub N N 166 U C2 N3 sing N N 167 U N3 C4 sing N N 168 U N3 H3 sing N N 169 U C4 O4 doub N N 170 U C4 C5 sing N N 171 U C5 C6 doub N N 172 U C5 H5 sing N N 173 U C6 H6 sing N N 174 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8D28 'double helix' 8D28 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 33 1_555 -0.282 -0.144 -0.035 -5.711 -8.082 -1.223 1 B_G1:C33_B B 1 ? B 33 ? 19 1 1 A G 2 1_555 A C 32 1_555 -0.288 -0.155 -0.169 -9.798 -13.795 0.878 2 B_G2:C32_B B 2 ? B 32 ? 19 1 1 A C 3 1_555 A G 31 1_555 0.199 -0.197 0.131 -6.848 -12.629 -0.666 3 B_C3:G31_B B 3 ? B 31 ? 19 1 1 A G 4 1_555 A C 30 1_555 -0.030 -0.120 0.086 -9.170 -17.835 -1.362 4 B_G4:C30_B B 4 ? B 30 ? 19 1 1 A A 5 1_555 A G 29 1_555 -0.087 1.433 -0.431 -4.051 -15.462 -12.246 5 B_A5:G29_B B 5 ? B 29 ? 8 1 1 A U 23 1_555 A A 28 1_555 -0.542 3.543 0.050 -0.828 -1.441 -67.819 6 B_U23:A28_B B 23 ? B 28 ? 23 3 1 A C 8 1_555 A G 26 1_555 0.174 -0.123 0.184 0.666 -2.767 -1.237 7 B_C8:G26_B B 8 ? B 26 ? 19 1 1 A C 9 1_555 A G 25 1_555 0.287 -0.195 0.040 9.991 -19.752 0.229 8 B_C9:G25_B B 9 ? B 25 ? 19 1 1 A A 10 1_555 A C 21 1_555 -4.421 -0.930 0.774 8.900 -0.682 -13.307 9 B_A10:C21_B B 10 ? B 21 ? ? 1 1 A G 11 1_555 A C 20 1_555 -0.125 -0.125 0.220 12.246 -11.095 1.018 10 B_G11:C20_B B 11 ? B 20 ? 19 1 1 A C 12 1_555 A G 19 1_555 0.147 -0.170 -0.324 7.510 -14.017 0.853 11 B_C12:G19_B B 12 ? B 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 0.417 -0.244 0.010 -0.729 2.677 -1.082 12 B_C13:G18_B B 13 ? B 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.964 -5.187 0.647 18.229 5.775 -11.592 13 B_G14:A17_B B 14 ? B 17 ? ? 10 1 B G 1 1_555 B C 33 1_555 -0.192 -0.151 0.121 -4.135 -10.012 -0.212 14 A_G1:C33_A A 1 ? A 33 ? 19 1 1 B G 2 1_555 B C 32 1_555 -0.198 -0.165 0.002 -5.064 -11.928 -1.554 15 A_G2:C32_A A 2 ? A 32 ? 19 1 1 B C 3 1_555 B G 31 1_555 0.217 -0.211 0.081 -3.111 -14.555 0.514 16 A_C3:G31_A A 3 ? A 31 ? 19 1 1 B G 4 1_555 B C 30 1_555 -0.099 -0.140 0.028 -10.205 -16.990 -0.993 17 A_G4:C30_A A 4 ? A 30 ? 19 1 1 B A 5 1_555 B G 29 1_555 -0.059 1.445 -0.482 -4.682 -16.852 -12.447 18 A_A5:G29_A A 5 ? A 29 ? 8 1 1 B U 23 1_555 B A 28 1_555 -0.582 3.525 0.031 -2.131 0.173 -68.474 19 A_U23:A28_A A 23 ? A 28 ? 23 3 1 B C 8 1_555 B G 26 1_555 0.181 -0.073 0.061 5.616 -3.508 -0.687 20 A_C8:G26_A A 8 ? A 26 ? 19 1 1 B C 9 1_555 B G 25 1_555 0.284 -0.279 -0.018 8.446 -21.007 0.658 21 A_C9:G25_A A 9 ? A 25 ? 19 1 1 B A 10 1_555 B C 21 1_555 -4.413 -0.887 0.867 9.115 1.075 -11.792 22 A_A10:C21_A A 10 ? A 21 ? ? 1 1 B G 11 1_555 B C 20 1_555 -0.103 -0.193 0.520 16.633 -12.826 1.166 23 A_G11:C20_A A 11 ? A 20 ? 19 1 1 B C 12 1_555 B G 19 1_555 0.219 -0.159 -0.287 9.558 -15.463 2.470 24 A_C12:G19_A A 12 ? A 19 ? 19 1 1 B C 13 1_555 B G 18 1_555 0.245 -0.195 0.105 -1.838 6.812 1.113 25 A_C13:G18_A A 13 ? A 18 ? 19 1 1 B G 14 1_555 B A 17 1_555 6.951 -5.320 0.866 20.901 8.472 -11.135 26 A_G14:A17_A A 14 ? A 17 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 33 1_555 A G 2 1_555 A C 32 1_555 -0.407 -1.895 3.310 -0.477 6.890 33.157 -4.317 0.626 2.875 11.913 0.824 33.849 1 BB_G1G2:C32C33_BB B 1 ? B 33 ? B 2 ? B 32 ? 1 A G 2 1_555 A C 32 1_555 A C 3 1_555 A G 31 1_555 -0.165 -1.259 3.179 -1.852 7.083 33.672 -3.158 0.009 2.868 12.051 3.152 34.436 2 BB_G2C3:G31C32_BB B 2 ? B 32 ? B 3 ? B 31 ? 1 A C 3 1_555 A G 31 1_555 A G 4 1_555 A C 30 1_555 0.746 -1.826 3.147 4.977 13.105 31.864 -4.814 -0.583 2.326 22.557 -8.566 34.738 3 BB_C3G4:C30G31_BB B 3 ? B 31 ? B 4 ? B 30 ? 1 A G 4 1_555 A C 30 1_555 A A 5 1_555 A G 29 1_555 -0.911 -1.365 3.093 4.108 4.599 30.742 -3.304 2.382 2.724 8.568 -7.652 31.340 4 BB_G4A5:G29C30_BB B 4 ? B 30 ? B 5 ? B 29 ? 1 A A 5 1_555 A G 29 1_555 A U 23 1_555 A A 28 1_555 0.893 -3.960 2.465 -112.949 -128.357 153.019 -1.740 -0.658 2.952 -64.271 56.556 177.897 5 BB_A5U23:A28G29_BB B 5 ? B 29 ? B 23 ? B 28 ? 1 A U 23 1_555 A A 28 1_555 A C 8 1_555 A G 26 1_555 -3.572 5.582 1.606 -167.683 -52.931 -49.827 -2.724 -2.005 -0.888 26.828 -84.989 -176.226 6 BB_U23C8:G26A28_BB B 23 ? B 28 ? B 8 ? B 26 ? 1 A C 8 1_555 A G 26 1_555 A C 9 1_555 A G 25 1_555 0.428 -0.851 2.896 2.482 11.361 38.082 -2.380 -0.383 2.570 16.936 -3.700 39.755 7 BB_C8C9:G25G26_BB B 8 ? B 26 ? B 9 ? B 25 ? 1 A C 9 1_555 A G 25 1_555 A A 10 1_555 A C 21 1_555 3.180 -1.384 2.795 -1.984 2.544 36.420 -2.492 -5.292 2.525 4.061 3.166 36.558 8 BB_C9A10:C21G25_BB B 9 ? B 25 ? B 10 ? B 21 ? 1 A A 10 1_555 A C 21 1_555 A G 11 1_555 A C 20 1_555 0.438 -1.292 3.256 -4.258 8.228 49.380 -2.092 -0.811 2.973 9.749 5.046 50.188 9 BB_A10G11:C20C21_BB B 10 ? B 21 ? B 11 ? B 20 ? 1 A G 11 1_555 A C 20 1_555 A C 12 1_555 A G 19 1_555 -0.372 -1.699 3.339 1.363 6.393 35.243 -3.656 0.795 2.979 10.447 -2.228 35.825 10 BB_G11C12:G19C20_BB B 11 ? B 20 ? B 12 ? B 19 ? 1 A C 12 1_555 A G 19 1_555 A C 13 1_555 A G 18 1_555 0.166 -1.844 3.528 -1.213 8.191 33.797 -4.354 -0.465 3.005 13.834 2.049 34.768 11 BB_C12C13:G18G19_BB B 12 ? B 19 ? B 13 ? B 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -1.427 -1.004 2.741 -1.294 6.869 51.876 -1.512 1.548 2.630 7.811 1.472 52.313 12 BB_C13G14:A17G18_BB B 13 ? B 18 ? B 14 ? B 17 ? 1 B G 1 1_555 B C 33 1_555 B G 2 1_555 B C 32 1_555 -0.741 -1.753 3.202 -1.417 5.063 33.787 -3.738 1.049 2.944 8.647 2.419 34.182 13 AA_G1G2:C32C33_AA A 1 ? A 33 ? A 2 ? A 32 ? 1 B G 2 1_555 B C 32 1_555 B C 3 1_555 B G 31 1_555 0.230 -1.276 3.217 0.181 4.679 33.093 -2.960 -0.372 3.014 8.163 -0.315 33.413 14 AA_G2C3:G31C32_AA A 2 ? A 32 ? A 3 ? A 31 ? 1 B C 3 1_555 B G 31 1_555 B G 4 1_555 B C 30 1_555 0.703 -1.771 3.246 4.151 14.053 33.376 -4.606 -0.604 2.400 23.132 -6.832 36.367 15 AA_C3G4:C30G31_AA A 3 ? A 31 ? A 4 ? A 30 ? 1 B G 4 1_555 B C 30 1_555 B A 5 1_555 B G 29 1_555 -0.870 -1.214 3.119 3.975 5.903 30.277 -3.286 2.311 2.706 11.110 -7.481 31.083 16 AA_G4A5:G29C30_AA A 4 ? A 30 ? A 5 ? A 29 ? 1 B A 5 1_555 B G 29 1_555 B U 23 1_555 B A 28 1_555 1.031 -3.862 2.416 -113.100 -125.015 156.301 -1.731 -0.696 2.809 -62.597 56.631 177.660 17 AA_A5U23:A28G29_AA A 5 ? A 29 ? A 23 ? A 28 ? 1 B U 23 1_555 B A 28 1_555 B C 8 1_555 B G 26 1_555 -3.719 5.546 1.355 -167.547 -50.610 -65.697 -2.739 -1.977 -0.907 25.634 -84.863 -175.820 18 AA_U23C8:G26A28_AA A 23 ? A 28 ? A 8 ? A 26 ? 1 B C 8 1_555 B G 26 1_555 B C 9 1_555 B G 25 1_555 0.447 -1.098 3.044 1.787 10.435 38.028 -2.728 -0.475 2.680 15.647 -2.679 39.421 19 AA_C8C9:G25G26_AA A 8 ? A 26 ? A 9 ? A 25 ? 1 B C 9 1_555 B G 25 1_555 B A 10 1_555 B C 21 1_555 3.191 -1.293 2.711 -1.641 2.048 38.043 -2.186 -5.050 2.506 3.137 2.514 38.130 20 AA_C9A10:C21G25_AA A 9 ? A 25 ? A 10 ? A 21 ? 1 B A 10 1_555 B C 21 1_555 B G 11 1_555 B C 20 1_555 0.399 -1.114 3.111 -3.783 7.322 49.963 -1.782 -0.714 2.896 8.600 4.444 50.595 21 AA_A10G11:C20C21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 B G 11 1_555 B C 20 1_555 B C 12 1_555 B G 19 1_555 0.031 -1.607 3.358 3.476 6.626 36.168 -3.420 0.413 3.017 10.534 -5.527 36.909 22 AA_G11C12:G19C20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 B C 12 1_555 B G 19 1_555 B C 13 1_555 B G 18 1_555 -0.035 -1.844 3.534 -3.029 9.438 32.324 -4.709 -0.432 2.888 16.476 5.288 33.771 23 AA_C12C13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 B C 13 1_555 B G 18 1_555 B G 14 1_555 B A 17 1_555 -1.720 -0.850 2.562 -3.001 5.052 52.720 -1.207 1.776 2.563 5.669 3.368 53.023 24 AA_C13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id TEP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id TEP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 THEOPHYLLINE TEP 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O15 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #