HEADER RNA BINDING PROTEIN/DNA/RNA 30-MAY-22 8D2K TITLE STRUCTURE OF ACIDOTHERMUS CELLULOLYTICUS CAS9 TERNARY COMPLEX TITLE 2 (CLEAVAGE INTERMEDIATE 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE, CSN1 FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SINGLE GUIDE RNA (102-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA TARGET STRAND (5'- COMPND 11 D(*AP*GP*CP*TP*TP*GP*GP*TP*GP*TP*AP*TP*A)-3'); COMPND 12 CHAIN: X; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA TARGET STRAND (5'- COMPND 16 D(P*CP*CP*AP*GP*GP*AP*TP*CP*TP*TP*GP*CP*CP*AP*TP*CP*CP*TP*AP*CP*CP*TP COMPND 17 *CP*T)-3'); COMPND 18 CHAIN: T; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: DNA NON-TARGET STRAND (5'- COMPND 22 D(P*TP*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'); COMPND 23 CHAIN: D; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: DNA NON-TARGET STRAND (5'-D(P*AP*GP*A)-3'); COMPND 27 CHAIN: Y; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS 11B; SOURCE 3 ORGANISM_TAXID: 351607; SOURCE 4 STRAIN: ATCC 43068 / DSM 8971 / 11B; SOURCE 5 GENE: ACEL_1951; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS; SOURCE 10 ORGANISM_TAXID: 28049; SOURCE 11 STRAIN: ATCC 43068 / DSM 8971 / 11B; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS 11B; SOURCE 17 ORGANISM_TAXID: 351607; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS 11B; SOURCE 21 ORGANISM_TAXID: 351607; SOURCE 22 MOL_ID: 5; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS 11B; SOURCE 25 ORGANISM_TAXID: 351607; SOURCE 26 MOL_ID: 6; SOURCE 27 SYNTHETIC: YES; SOURCE 28 ORGANISM_SCIENTIFIC: ACIDOTHERMUS CELLULOLYTICUS 11B; SOURCE 29 ORGANISM_TAXID: 351607 KEYWDS CAS9, ACCAS9, CRISPR, RNA BINDING PROTEIN, RNA BINDING PROTEIN-DNA- KEYWDS 2 RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.RAI,A.DAS,H.LI REVDAT 2 01-MAY-24 8D2K 1 JRNL REVDAT 1 20-DEC-23 8D2K 0 JRNL AUTH A.DAS,J.RAI,M.O.ROTH,Y.SHU,M.L.MEDINA,M.R.BARAKAT,H.LI JRNL TITL COUPLED CATALYTIC STATES AND THE ROLE OF METAL COORDINATION JRNL TITL 2 IN CAS9. JRNL REF NAT CATAL V. 6 969 2023 JRNL REFN ESSN 2520-1158 JRNL PMID 38348449 JRNL DOI 10.1038/S41929-023-01031-1 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.430 REMARK 3 NUMBER OF PARTICLES : 186956 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8D2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265902. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYOEM STRUCTURE OF ACECAS9 REMARK 245 (CLEAVAGE INTERMEDIATE 2); REMARK 245 CRISPR-ASSOCIATED ENDONUCLEASE, REMARK 245 CSN1 FAMILY/RNA; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, T, D, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 204 REMARK 465 GLY A 205 REMARK 465 ARG A 206 REMARK 465 ARG A 207 REMARK 465 ALA A 208 REMARK 465 GLU A 209 REMARK 465 GLU A 411 REMARK 465 GLU A 412 REMARK 465 GLU A 413 REMARK 465 GLN A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 779 REMARK 465 PHE A 780 REMARK 465 TRP A 781 REMARK 465 ARG A 782 REMARK 465 ARG A 783 REMARK 465 PRO A 784 REMARK 465 SER A 785 REMARK 465 ASP A 786 REMARK 465 VAL A 787 REMARK 465 ASN A 788 REMARK 465 ARG A 789 REMARK 465 HIS A 790 REMARK 465 GLY A 1135 REMARK 465 GLY A 1136 REMARK 465 THR A 1137 REMARK 465 PRO A 1138 REMARK 465 A B 91 REMARK 465 G B 92 REMARK 465 C B 93 REMARK 465 A B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 14 P DC T 14 OP3 -0.133 REMARK 500 DT D 28 P DT D 28 OP3 -0.132 REMARK 500 DA D 29 O3' DA D 29 C3' 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP B 1 C3' - O3' - P ANGL. DEV. = -10.6 DEGREES REMARK 500 G B 2 O3' - P - OP2 ANGL. DEV. = 14.6 DEGREES REMARK 500 U B 24 N1 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 U B 24 N3 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 C B 26 C6 - N1 - C2 ANGL. DEV. = -2.4 DEGREES REMARK 500 C B 26 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 C B 47 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 U B 87 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 U B 87 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 C B 88 C6 - N1 - C2 ANGL. DEV. = -4.3 DEGREES REMARK 500 C B 88 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 C B 96 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 G B 97 N1 - C2 - N2 ANGL. DEV. = -6.7 DEGREES REMARK 500 G B 97 N3 - C2 - N2 ANGL. DEV. = 5.6 DEGREES REMARK 500 G B 97 C3' - O3' - P ANGL. DEV. = 13.0 DEGREES REMARK 500 DG T 17 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC T 21 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA D 29 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DT D 30 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA D 36 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 33 -120.71 59.80 REMARK 500 SER A 300 -0.14 70.61 REMARK 500 PRO A 347 46.79 -79.19 REMARK 500 SER A 583 -169.28 -127.65 REMARK 500 SER A 739 -174.76 60.72 REMARK 500 CYS A1089 -137.79 59.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 GLU A 516 OE1 70.2 REMARK 620 3 GLU A 516 OE2 112.0 49.3 REMARK 620 4 HOH A1304 O 164.3 96.0 59.9 REMARK 620 5 HOH A1309 O 101.1 127.4 94.1 93.1 REMARK 620 6 HOH A1336 O 74.3 64.4 100.1 93.4 165.8 REMARK 620 7 DT D 28 OP2 111.6 159.8 136.1 78.7 72.7 96.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD2 REMARK 620 2 HOH A1321 O 83.3 REMARK 620 3 HOH A1324 O 93.9 165.5 REMARK 620 4 DT D 28 OP3 127.2 74.8 117.5 REMARK 620 5 DT D 28 OP2 73.2 84.9 108.0 57.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 590 OD1 REMARK 620 2 ASN A 614 OD1 87.8 REMARK 620 3 HOH A1382 O 102.9 83.2 REMARK 620 4 DC T 14 OP2 90.7 90.6 164.8 REMARK 620 5 HOH T 111 O 96.4 174.0 100.0 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1388 O REMARK 620 2 U B 22 OP1 72.2 REMARK 620 3 A B 23 OP2 124.7 109.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1323 O REMARK 620 2 U B 24 OP1 93.0 REMARK 620 3 C B 47 OP1 122.3 121.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 48 OP2 REMARK 620 2 HOH B 328 O 102.1 REMARK 620 3 HOH B 383 O 115.7 99.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 52 OP1 REMARK 620 2 HOH B 305 O 82.6 REMARK 620 3 HOH B 329 O 95.3 94.3 REMARK 620 4 HOH B 376 O 162.4 79.9 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 78 OP1 REMARK 620 2 HOH B 308 O 80.5 REMARK 620 3 HOH B 324 O 74.6 91.1 REMARK 620 4 HOH B 364 O 80.6 87.6 155.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 383 O REMARK 620 2 HOH B 400 O 119.3 REMARK 620 3 HOH B 412 O 79.5 71.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27141 RELATED DB: EMDB REMARK 900 STRUCTURE OF ACIDOTHERMUS CELLULOLYTICUS CAS9 TERNARY COMPLEX REMARK 900 (CLEAVAGE INTERMEDIATE 2) DBREF 8D2K A 1 1138 UNP A0LWB3 A0LWB3_ACIC1 1 1138 DBREF 8D2K B 1 106 PDB 8D2K 8D2K 1 106 DBREF 8D2K X 1 13 PDB 8D2K 8D2K 1 13 DBREF 8D2K T 14 37 PDB 8D2K 8D2K 14 37 DBREF 8D2K D 28 40 PDB 8D2K 8D2K 28 40 DBREF 8D2K Y 4 6 PDB 8D2K 8D2K 4 6 SEQRES 1 A 1138 MET GLY GLY SER GLU VAL GLY THR VAL PRO VAL THR TRP SEQRES 2 A 1138 ARG LEU GLY VAL ASP VAL GLY GLU ARG SER ILE GLY LEU SEQRES 3 A 1138 ALA ALA VAL SER TYR GLU GLU ASP LYS PRO LYS GLU ILE SEQRES 4 A 1138 LEU ALA ALA VAL SER TRP ILE HIS ASP GLY GLY VAL GLY SEQRES 5 A 1138 ASP GLU ARG SER GLY ALA SER ARG LEU ALA LEU ARG GLY SEQRES 6 A 1138 MET ALA ARG ARG ALA ARG ARG LEU ARG ARG PHE ARG ARG SEQRES 7 A 1138 ALA ARG LEU ARG ASP LEU ASP MET LEU LEU SER GLU LEU SEQRES 8 A 1138 GLY TRP THR PRO LEU PRO ASP LYS ASN VAL SER PRO VAL SEQRES 9 A 1138 ASP ALA TRP LEU ALA ARG LYS ARG LEU ALA GLU GLU TYR SEQRES 10 A 1138 VAL VAL ASP GLU THR GLU ARG ARG ARG LEU LEU GLY TYR SEQRES 11 A 1138 ALA VAL SER HIS MET ALA ARG HIS ARG GLY TRP ARG ASN SEQRES 12 A 1138 PRO TRP THR THR ILE LYS ASP LEU LYS ASN LEU PRO GLN SEQRES 13 A 1138 PRO SER ASP SER TRP GLU ARG THR ARG GLU SER LEU GLU SEQRES 14 A 1138 ALA ARG TYR SER VAL SER LEU GLU PRO GLY THR VAL GLY SEQRES 15 A 1138 GLN TRP ALA GLY TYR LEU LEU GLN ARG ALA PRO GLY ILE SEQRES 16 A 1138 ARG LEU ASN PRO THR GLN GLN SER ALA GLY ARG ARG ALA SEQRES 17 A 1138 GLU LEU SER ASN ALA THR ALA PHE GLU THR ARG LEU ARG SEQRES 18 A 1138 GLN GLU ASP VAL LEU TRP GLU LEU ARG CYS ILE ALA ASP SEQRES 19 A 1138 VAL GLN GLY LEU PRO GLU ASP VAL VAL SER ASN VAL ILE SEQRES 20 A 1138 ASP ALA VAL PHE CYS GLN LYS ARG PRO SER VAL PRO ALA SEQRES 21 A 1138 GLU ARG ILE GLY ARG ASP PRO LEU ASP PRO SER GLN LEU SEQRES 22 A 1138 ARG ALA SER ARG ALA CYS LEU GLU PHE GLN GLU TYR ARG SEQRES 23 A 1138 ILE VAL ALA ALA VAL ALA ASN LEU ARG ILE ARG ASP GLY SEQRES 24 A 1138 SER GLY SER ARG PRO LEU SER LEU GLU GLU ARG ASN ALA SEQRES 25 A 1138 VAL ILE GLU ALA LEU LEU ALA GLN THR GLU ARG SER LEU SEQRES 26 A 1138 THR TRP SER ASP ILE ALA LEU GLU ILE LEU LYS LEU PRO SEQRES 27 A 1138 ASN GLU SER ASP LEU THR SER VAL PRO GLU GLU ASP GLY SEQRES 28 A 1138 PRO SER SER LEU ALA TYR SER GLN PHE ALA PRO PHE ASP SEQRES 29 A 1138 GLU THR SER ALA ARG ILE ALA GLU PHE ILE ALA LYS ASN SEQRES 30 A 1138 ARG ARG LYS ILE PRO THR PHE ALA GLN TRP TRP GLN GLU SEQRES 31 A 1138 GLN ASP ARG THR SER ARG SER ASP LEU VAL ALA ALA LEU SEQRES 32 A 1138 ALA ASP ASN SER ILE ALA GLY GLU GLU GLU GLN GLU LEU SEQRES 33 A 1138 LEU VAL HIS LEU PRO ASP ALA GLU LEU GLU ALA LEU GLU SEQRES 34 A 1138 GLY LEU ALA LEU PRO SER GLY ARG VAL ALA TYR SER ARG SEQRES 35 A 1138 LEU THR LEU SER GLY LEU THR ARG VAL MET ARG ASP ASP SEQRES 36 A 1138 GLY VAL ASP VAL HIS ASN ALA ARG LYS THR CYS PHE GLY SEQRES 37 A 1138 VAL ASP ASP ASN TRP ARG PRO PRO LEU PRO ALA LEU HIS SEQRES 38 A 1138 GLU ALA THR GLY HIS PRO VAL VAL ASP ARG ASN LEU ALA SEQRES 39 A 1138 ILE LEU ARG LYS PHE LEU SER SER ALA THR MET ARG TRP SEQRES 40 A 1138 GLY PRO PRO GLN SER ILE VAL VAL GLU LEU ALA ARG GLY SEQRES 41 A 1138 ALA SER GLU SER ARG GLU ARG GLN ALA GLU GLU GLU ALA SEQRES 42 A 1138 ALA ARG ARG ALA HIS ARG LYS ALA ASN ASP ARG ILE ARG SEQRES 43 A 1138 ALA GLU LEU ARG ALA SER GLY LEU SER ASP PRO SER PRO SEQRES 44 A 1138 ALA ASP LEU VAL ARG ALA ARG LEU LEU GLU LEU TYR ASP SEQRES 45 A 1138 CYS HIS CYS MET TYR CYS GLY ALA PRO ILE SER TRP GLU SEQRES 46 A 1138 ASN SER GLU LEU ASP HIS ILE VAL PRO ARG THR ASP GLY SEQRES 47 A 1138 GLY SER ASN ARG HIS GLU ASN LEU ALA ILE THR CYS GLY SEQRES 48 A 1138 ALA CYS ASN LYS GLU LYS GLY ARG ARG PRO PHE ALA SER SEQRES 49 A 1138 TRP ALA GLU THR SER ASN ARG VAL GLN LEU ARG ASP VAL SEQRES 50 A 1138 ILE ASP ARG VAL GLN LYS LEU LYS TYR SER GLY ASN MET SEQRES 51 A 1138 TYR TRP THR ARG ASP GLU PHE SER ARG TYR LYS LYS SER SEQRES 52 A 1138 VAL VAL ALA ARG LEU LYS ARG ARG THR SER ASP PRO GLU SEQRES 53 A 1138 VAL ILE GLN SER ILE GLU SER THR GLY TYR ALA ALA VAL SEQRES 54 A 1138 ALA LEU ARG ASP ARG LEU LEU SER TYR GLY GLU LYS ASN SEQRES 55 A 1138 GLY VAL ALA GLN VAL ALA VAL PHE ARG GLY GLY VAL THR SEQRES 56 A 1138 ALA GLU ALA ARG ARG TRP LEU ASP ILE SER ILE GLU ARG SEQRES 57 A 1138 LEU PHE SER ARG VAL ALA ILE PHE ALA GLN SER THR SER SEQRES 58 A 1138 THR LYS ARG LEU ASP ARG ARG HIS HIS ALA VAL ASP ALA SEQRES 59 A 1138 VAL VAL LEU THR THR LEU THR PRO GLY VAL ALA LYS THR SEQRES 60 A 1138 LEU ALA ASP ALA ARG SER ARG ARG VAL SER ALA GLU PHE SEQRES 61 A 1138 TRP ARG ARG PRO SER ASP VAL ASN ARG HIS SER THR GLU SEQRES 62 A 1138 GLU PRO GLN SER PRO ALA TYR ARG GLN TRP LYS GLU SER SEQRES 63 A 1138 CYS SER GLY LEU GLY ASP LEU LEU ILE SER THR ALA ALA SEQRES 64 A 1138 ARG ASP SER ILE ALA VAL ALA ALA PRO LEU ARG LEU ARG SEQRES 65 A 1138 PRO THR GLY ALA LEU HIS GLU GLU THR LEU ARG ALA PHE SEQRES 66 A 1138 SER GLU HIS THR VAL GLY ALA ALA TRP LYS GLY ALA GLU SEQRES 67 A 1138 LEU ARG ARG ILE VAL GLU PRO GLU VAL TYR ALA ALA PHE SEQRES 68 A 1138 LEU ALA LEU THR ASP PRO GLY GLY ARG PHE LEU LYS VAL SEQRES 69 A 1138 SER PRO SER GLU ASP VAL LEU PRO ALA ASP GLU ASN ARG SEQRES 70 A 1138 HIS ILE VAL LEU SER ASP ARG VAL LEU GLY PRO ARG ASP SEQRES 71 A 1138 ARG VAL LYS LEU PHE PRO ASP ASP ARG GLY SER ILE ARG SEQRES 72 A 1138 VAL ARG GLY GLY ALA ALA TYR ILE ALA SER PHE HIS HIS SEQRES 73 A 1138 ALA ARG VAL PHE ARG TRP GLY SER SER HIS SER PRO SER SEQRES 74 A 1138 PHE ALA LEU LEU ARG VAL SER LEU ALA ASP LEU ALA VAL SEQRES 75 A 1138 ALA GLY LEU LEU ARG ASP GLY VAL ASP VAL PHE THR ALA SEQRES 76 A 1138 GLU LEU PRO PRO TRP THR PRO ALA TRP ARG TYR ALA SER SEQRES 77 A 1138 ILE ALA LEU VAL LYS ALA VAL GLU SER GLY ASP ALA LYS SEQRES 78 A 1138 GLN VAL GLY TRP LEU VAL PRO GLY ASP GLU LEU ASP PHE SEQRES 79 A 1138 GLY PRO GLU GLY VAL THR THR ALA ALA GLY ASP LEU SER SEQRES 80 A 1138 MET PHE LEU LYS TYR PHE PRO GLU ARG HIS TRP VAL VAL SEQRES 81 A 1138 THR GLY PHE GLU ASP ASP LYS ARG ILE ASN LEU LYS PRO SEQRES 82 A 1138 ALA PHE LEU SER ALA GLU GLN ALA GLU VAL LEU ARG THR SEQRES 83 A 1138 GLU ARG SER ASP ARG PRO ASP THR LEU THR GLU ALA GLY SEQRES 84 A 1138 GLU ILE LEU ALA GLN PHE PHE PRO ARG CYS TRP ARG ALA SEQRES 85 A 1138 THR VAL ALA LYS VAL LEU CYS HIS PRO GLY LEU THR VAL SEQRES 86 A 1138 ILE ARG ARG THR ALA LEU GLY GLN PRO ARG TRP ARG ARG SEQRES 87 A 1138 GLY HIS LEU PRO TYR SER TRP ARG PRO TRP SER ALA ASP SEQRES 88 A 1138 PRO TRP SER GLY GLY THR PRO SEQRES 1 B 106 GTP G U A G G A U G G C A A SEQRES 2 B 106 G A U C C U G G U A U G C SEQRES 3 B 106 U G G G G A G C C U G A A SEQRES 4 B 106 A A G G C U A C C U A G C SEQRES 5 B 106 A A G A C C C C U U C G U SEQRES 6 B 106 G G G G U C G C A U U C U SEQRES 7 B 106 U C A C C C C C U C G C A SEQRES 8 B 106 G C A G C G A G G G G G U SEQRES 9 B 106 U C SEQRES 1 X 13 DA DG DC DT DT DG DG DT DG DT DA DT DA SEQRES 1 T 24 DC DC DA DG DG DA DT DC DT DT DG DC DC SEQRES 2 T 24 DA DT DC DC DT DA DC DC DT DC DT SEQRES 1 D 13 DT DA DT DA DC DA DC DC DA DA DG DC DT SEQRES 1 Y 3 DA DG DA HET GTP B 1 32 HET MG A1201 1 HET MG A1202 1 HET MG A1203 1 HET MG A1204 1 HET MG A1205 1 HET MG B 201 1 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET MG B 205 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 7 MG 10(MG 2+) FORMUL 17 HOH *300(H2 O) HELIX 1 AA1 SER A 59 GLY A 92 1 34 HELIX 2 AA2 VAL A 104 GLU A 116 1 13 HELIX 3 AA3 ASP A 120 HIS A 138 1 19 HELIX 4 AA4 THR A 147 ASN A 153 1 7 HELIX 5 AA5 SER A 158 SER A 173 1 16 HELIX 6 AA6 THR A 180 ALA A 192 1 13 HELIX 7 AA7 ARG A 221 GLY A 237 1 17 HELIX 8 AA8 PRO A 239 PHE A 251 1 13 HELIX 9 AA9 PRO A 259 ILE A 263 5 5 HELIX 10 AB1 CYS A 279 ASN A 293 1 15 HELIX 11 AB2 SER A 306 ALA A 319 1 14 HELIX 12 AB3 THR A 326 GLU A 333 1 8 HELIX 13 AB4 ASN A 339 SER A 341 5 3 HELIX 14 AB5 SER A 354 GLN A 359 1 6 HELIX 15 AB6 ASP A 364 ASN A 377 1 14 HELIX 16 AB7 ILE A 381 GLN A 391 1 11 HELIX 17 AB8 ASP A 392 ASN A 406 1 15 HELIX 18 AB9 PRO A 421 LEU A 431 1 11 HELIX 19 AC1 SER A 441 GLY A 456 1 16 HELIX 20 AC2 ASP A 458 GLY A 468 1 11 HELIX 21 AC3 HIS A 486 GLY A 508 1 23 HELIX 22 AC4 SER A 524 GLY A 553 1 30 HELIX 23 AC5 SER A 558 TYR A 571 1 14 HELIX 24 AC6 PRO A 594 GLY A 598 5 5 HELIX 25 AC7 ARG A 602 GLU A 604 5 3 HELIX 26 AC8 GLY A 611 GLY A 618 1 8 HELIX 27 AC9 PRO A 621 GLU A 627 1 7 HELIX 28 AD1 GLN A 633 LYS A 643 1 11 HELIX 29 AD2 THR A 653 ARG A 670 1 18 HELIX 30 AD3 ILE A 681 GLY A 703 1 23 HELIX 31 AD4 GLY A 712 LEU A 722 1 11 HELIX 32 AD5 SER A 725 PHE A 730 1 6 HELIX 33 AD6 THR A 742 ARG A 747 5 6 HELIX 34 AD7 ARG A 748 THR A 758 1 11 HELIX 35 AD8 THR A 761 SER A 777 1 17 HELIX 36 AD9 SER A 797 CYS A 807 1 11 HELIX 37 AE1 GLY A 809 ARG A 820 1 12 HELIX 38 AE2 GLY A 856 ARG A 861 1 6 HELIX 39 AE3 GLU A 864 ASP A 876 1 13 HELIX 40 AE4 LEU A 957 ALA A 963 1 7 HELIX 41 AE5 THR A 981 TYR A 986 1 6 HELIX 42 AE6 SER A 988 SER A 997 1 10 HELIX 43 AE7 ASP A 1025 PHE A 1033 1 9 HELIX 44 AE8 SER A 1057 ARG A 1071 1 15 HELIX 45 AE9 THR A 1076 PHE A 1086 1 11 HELIX 46 AF1 VAL A 1094 LEU A 1098 1 5 SHEET 1 AA1 6 GLN A 706 ARG A 711 0 SHEET 2 AA1 6 SER A 512 LEU A 517 1 N VAL A 515 O ALA A 708 SHEET 3 AA1 6 TRP A 13 VAL A 19 1 N LEU A 15 O VAL A 514 SHEET 4 AA1 6 SER A 23 GLU A 32 -1 O GLY A 25 N ASP A 18 SHEET 5 AA1 6 LYS A 35 ILE A 46 -1 O LYS A 37 N SER A 30 SHEET 6 AA1 6 ALA A 824 ALA A 826 1 O ALA A 824 N SER A 44 SHEET 1 AA2 3 GLY A 301 PRO A 304 0 SHEET 2 AA2 3 ARG A 295 ASP A 298 -1 N ASP A 298 O GLY A 301 SHEET 3 AA2 3 LEU A 343 THR A 344 -1 O THR A 344 N ARG A 295 SHEET 1 AA3 2 GLU A 588 HIS A 591 0 SHEET 2 AA3 2 LEU A 606 THR A 609 -1 O ALA A 607 N ASP A 590 SHEET 1 AA4 2 SER A 846 THR A 849 0 SHEET 2 AA4 2 ARG A 911 LEU A 914 -1 O VAL A 912 N HIS A 848 SHEET 1 AA5 2 TRP A 854 LYS A 855 0 SHEET 2 AA5 2 ASP A 889 LEU A 891 -1 O LEU A 891 N TRP A 854 SHEET 1 AA6 2 ILE A 899 VAL A 900 0 SHEET 2 AA6 2 VAL A 905 LEU A 906 -1 O LEU A 906 N ILE A 899 SHEET 1 AA7 2 SER A 921 VAL A 924 0 SHEET 2 AA7 2 GLY A 927 TYR A 930 -1 O ALA A 929 N ILE A 922 SHEET 1 AA8 3 SER A 949 SER A 956 0 SHEET 2 AA8 3 PHE A 934 TRP A 942 -1 N HIS A 936 O VAL A 955 SHEET 3 AA8 3 LYS A1001 LEU A1006 -1 O LEU A1006 N ALA A 937 SHEET 1 AA9 5 TRP A1090 THR A1093 0 SHEET 2 AA9 5 ARG A1048 PRO A1053 -1 N LEU A1051 O TRP A1090 SHEET 3 AA9 5 HIS A1037 ASP A1045 -1 N VAL A1039 O LYS A1052 SHEET 4 AA9 5 GLU A1011 ASP A1013 -1 N LEU A1012 O TRP A1038 SHEET 5 AA9 5 THR A1104 ILE A1106 -1 O THR A1104 N ASP A1013 LINK O3' GTP B 1 P G B 2 1555 1555 1.56 LINK OD1 ASP A 18 MG MG A1202 1555 1555 2.05 LINK OD2 ASP A 18 MG MG A1203 1555 1555 2.00 LINK OE1 GLU A 516 MG MG A1202 1555 1555 2.74 LINK OE2 GLU A 516 MG MG A1202 1555 1555 2.49 LINK OD1 ASP A 590 MG MG A1201 1555 1555 2.06 LINK OD1 ASN A 614 MG MG A1201 1555 1555 2.06 LINK MG MG A1201 O HOH A1382 1555 1555 2.12 LINK MG MG A1201 OP2 DC T 14 1555 1555 2.02 LINK MG MG A1201 O HOH T 111 1555 1555 2.07 LINK MG MG A1202 O HOH A1304 1555 1555 2.09 LINK MG MG A1202 O HOH A1309 1555 1555 2.04 LINK MG MG A1202 O HOH A1336 1555 1555 2.08 LINK MG MG A1202 OP2 DT D 28 1555 1555 2.03 LINK MG MG A1203 O HOH A1321 1555 1555 2.30 LINK MG MG A1203 O HOH A1324 1555 1555 2.60 LINK MG MG A1203 OP3 DT D 28 1555 1555 2.03 LINK MG MG A1203 OP2 DT D 28 1555 1555 2.74 LINK MG MG A1204 O HOH A1388 1555 1555 2.45 LINK MG MG A1204 OP1 U B 22 1555 1555 2.83 LINK MG MG A1204 OP2 A B 23 1555 1555 2.95 LINK MG MG A1205 O HOH A1323 1555 1555 2.91 LINK MG MG A1205 OP1 U B 24 1555 1555 2.52 LINK MG MG A1205 OP1 C B 47 1555 1555 2.27 LINK OP2 U B 22 MG MG B 205 1555 1555 2.60 LINK OP2 C B 48 MG MG B 201 1555 1555 2.82 LINK OP1 C B 52 MG MG B 203 1555 1555 2.20 LINK OP1 U B 78 MG MG B 204 1555 1555 2.00 LINK MG MG B 201 O HOH B 328 1555 1555 2.81 LINK MG MG B 201 O HOH B 383 1555 1555 2.42 LINK MG MG B 202 O HOH B 383 1555 1555 2.46 LINK MG MG B 202 O HOH B 400 1555 1555 2.06 LINK MG MG B 202 O HOH B 412 1555 1555 2.67 LINK MG MG B 203 O HOH B 305 1555 1555 2.29 LINK MG MG B 203 O HOH B 329 1555 1555 2.28 LINK MG MG B 203 O HOH B 376 1555 1555 2.16 LINK MG MG B 204 O HOH B 308 1555 1555 2.16 LINK MG MG B 204 O HOH B 324 1555 1555 2.13 LINK MG MG B 204 O HOH B 364 1555 1555 2.20 CISPEP 1 GLN A 156 PRO A 157 0 -2.63 CISPEP 2 GLU A 177 PRO A 178 0 1.00 CISPEP 3 SER A 791 THR A 792 0 1.43 CISPEP 4 PHE A 1086 PRO A 1087 0 1.78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000