data_8D31 # _entry.id 8D31 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8D31 pdb_00008d31 10.2210/pdb8d31/pdb WWPDB D_1000265943 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8D31 _pdbx_database_status.recvd_initial_deposition_date 2022-05-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lu, B.' 1 0000-0001-6424-2197 'Vecchioni, S.' 2 0000-0001-8243-650X 'Ohayon, Y.P.' 3 0000-0001-7500-4282 'Seeman, N.C.' 4 0000-0002-9680-4649 'Mao, C.' 5 0000-0001-7516-8666 'Sha, R.' 6 0000-0002-0807-734X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Small _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1613-6829 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first e2205830 _citation.page_last e2205830 _citation.title 'Highly Symmetric, Self-Assembling 3D DNA Crystals with Cubic and Trigonal Lattices.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/smll.202205830 _citation.pdbx_database_id_PubMed 36408817 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, B.' 1 ? primary 'Vecchioni, S.' 2 ? primary 'Ohayon, Y.P.' 3 ? primary 'Woloszyn, K.' 4 ? primary 'Markus, T.' 5 ? primary 'Mao, C.' 6 ? primary 'Seeman, N.C.' 7 ? primary 'Canary, J.W.' 8 ? primary 'Sha, R.' 9 0000-0002-0807-734X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8D31 _cell.details ? _cell.formula_units_Z ? _cell.length_a 187.499 _cell.length_a_esd ? _cell.length_b 187.499 _cell.length_b_esd ? _cell.length_c 187.499 _cell.length_c_esd ? _cell.volume 6591691.407 _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8D31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*GP*CP*CP*TP*AP*CP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3') ; 7339.744 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3') ; 2082.400 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*GP*CP*TP*AP*AP*GP*C)-3') ; 2451.630 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*TP*CP*CP*TP*GP*AP*TP*GP*T)-3') ; 2721.796 2 ? ? ? ? 5 polymer syn ;DNA (5'-D(*AP*GP*GP*CP*CP*TP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3') ; 7379.768 1 ? ? ? ? 6 polymer syn ;DNA (5'-D(P*GP*GP*CP*TP*AP*GP*GP*C)-3') ; 2467.629 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DA)(DG)(DG)(DC)(DC)(DT)(DA)(DC)(DC)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DA)(DC)(DA) (DT)(DC)(DA)(DG) ; AGGCCTACCCTGTACGGACATCAG E ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DT)(DA)(DC)(DA)' CCGTACA F,B ? 3 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DA)(DA)(DG)(DC)' GGCTAAGC G ? 4 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DG)(DA)(DT)(DG)(DT)' TCCTGATGT H,D ? 5 polydeoxyribonucleotide no no ;(DA)(DG)(DG)(DC)(DC)(DT)(DA)(DG)(DC)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DA)(DC)(DA) (DT)(DC)(DA)(DG) ; AGGCCTAGCCTGTACGGACATCAG A ? 6 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DA)(DG)(DG)(DC)' GGCTAGGC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DG n 1 13 DT n 1 14 DA n 1 15 DC n 1 16 DG n 1 17 DG n 1 18 DA n 1 19 DC n 1 20 DA n 1 21 DT n 1 22 DC n 1 23 DA n 1 24 DG n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DC n 2 7 DA n 3 1 DG n 3 2 DG n 3 3 DC n 3 4 DT n 3 5 DA n 3 6 DA n 3 7 DG n 3 8 DC n 4 1 DT n 4 2 DC n 4 3 DC n 4 4 DT n 4 5 DG n 4 6 DA n 4 7 DT n 4 8 DG n 4 9 DT n 5 1 DA n 5 2 DG n 5 3 DG n 5 4 DC n 5 5 DC n 5 6 DT n 5 7 DA n 5 8 DG n 5 9 DC n 5 10 DC n 5 11 DT n 5 12 DG n 5 13 DT n 5 14 DA n 5 15 DC n 5 16 DG n 5 17 DG n 5 18 DA n 5 19 DC n 5 20 DA n 5 21 DT n 5 22 DC n 5 23 DA n 5 24 DG n 6 1 DG n 6 2 DG n 6 3 DC n 6 4 DT n 6 5 DA n 6 6 DG n 6 7 DG n 6 8 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 24 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? 3 1 sample 1 8 'synthetic construct' ? 32630 ? 4 1 sample 1 9 'synthetic construct' ? 32630 ? 5 1 sample 1 24 'synthetic construct' ? 32630 ? 6 1 sample 1 8 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8D31 8D31 ? 1 ? 1 2 PDB 8D31 8D31 ? 2 ? 1 3 PDB 8D31 8D31 ? 3 ? 1 4 PDB 8D31 8D31 ? 4 ? 1 5 PDB 8D31 8D31 ? 5 ? 1 6 PDB 8D31 8D31 ? 6 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8D31 E 1 ? 24 ? 8D31 101 ? 124 ? 101 124 2 2 8D31 F 1 ? 7 ? 8D31 119 ? 125 ? 119 125 3 3 8D31 G 1 ? 8 ? 8D31 209 ? 216 ? 209 216 4 4 8D31 H 1 ? 9 ? 8D31 101 ? 109 ? 101 109 5 5 8D31 A 1 ? 24 ? 8D31 101 ? 124 ? 101 124 6 2 8D31 B 1 ? 7 ? 8D31 119 ? 125 ? 119 125 7 6 8D31 C 1 ? 8 ? 8D31 209 ? 216 ? 209 216 8 4 8D31 D 1 ? 9 ? 8D31 101 ? 109 ? 101 109 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8D31 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 9.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 86.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details '338-293 at 0.4/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.75 M ammonium sulfate, 120 mM Tris, 120 mM Acetic Acid, 6 mM EDTA' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 568.31 _reflns.entry_id 8D31 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 7.45 _reflns.d_resolution_low 44.19 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1558 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 70.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 7.45 _reflns_shell.d_res_low 8.00 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 217 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.606 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 467.57 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8D31 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 7.45 _refine.ls_d_res_low 44.19 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1558 _refine.ls_number_reflns_R_free 78 _refine.ls_number_reflns_R_work 1480 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.79 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2756 _refine.ls_R_factor_R_free 0.3162 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2737 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3GBI _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 42.3129 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.9391 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 7.45 _refine_hist.d_res_low 44.19 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1952 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1952 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0070 ? 2183 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0292 ? 3351 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0579 ? 380 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0069 ? 96 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 41.2086 ? 932 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' d_2 ? ? 4.58302568711 ? ? 1 'Torsion NCS' ? E ? ? ? ens_1 'X-RAY DIFFRACTION' d_2 ? ? 0.330562954801 ? ? 2 'Torsion NCS' ? F ? ? ? ens_2 'X-RAY DIFFRACTION' d_2 ? ? 2.17752242812 ? ? 3 'Torsion NCS' ? G ? ? ? ens_3 'X-RAY DIFFRACTION' d_2 ? ? 1.38767122524 ? ? 4 'Torsion NCS' ? H ? ? ? ens_4 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 7.45 _refine_ls_shell.d_res_low 44.19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.number_reflns_R_work 1480 _refine_ls_shell.percent_reflns_obs 92.79 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3162 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2737 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 0.551528332503 -0.672060487716 -0.494116584722 0.727864841244 0.0983801367392 0.678626643727 -0.407466895991 -0.733931910701 0.543428632965 -47.9534688475 -59.0883343013 44.7774770965 ? 2 given 0.606035768711 -0.642990700763 -0.468277274458 0.7183830398 0.189661723439 0.669293835912 -0.341535437649 -0.742018456235 0.576855402537 -52.2278951398 -57.0991122648 39.5660235818 ? 3 given 0.427826591672 -0.870733637877 -0.242461005788 0.775266967117 0.215601207167 0.593697944383 -0.464677885374 -0.44197177663 0.767290956227 -38.2826360484 -61.1928105194 49.1732340595 ? 4 given 0.640193669057 -0.603224186906 -0.475681244565 0.721815170959 0.260403146479 0.641227775659 -0.262935210788 -0.753863901268 0.602124815377 -54.7582915502 -59.4050245891 31.7727154064 ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 101 through 107 or resid 109 through 124)) ; ens_1 d_2 ;(chain "E" and (resid 101 through 107 or resid 109 through 124)) ; ens_2 d_1 ;chain "B" ; ens_2 d_2 ;chain "F" ; ens_3 d_1 ;(chain "C" and (resid 209 through 213 or resid 215 through 216)) ; ens_3 d_2 ;(chain "G" and (resid 209 through 213 or resid 215 through 216)) ; ens_4 d_1 ;chain "D" ; ens_4 d_2 ;chain "H" ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id ens_1 d_1 1 . E DA . . E DG . ? ? ? ? ? ? ? ? ens_1 d_2 1 . A DA . . A DG . ? ? ? ? ? ? ? ? ens_2 d_1 1 . F DC . . F DA . ? ? ? ? ? ? ? ? ens_2 d_2 1 . B DC . . B DA . ? ? ? ? ? ? ? ? ens_3 d_1 1 . G DG . . G DC . ? ? ? ? ? ? ? ? ens_3 d_2 1 . C DG . . C DC . ? ? ? ? ? ? ? ? ens_4 d_1 1 . H DT . . H DT . ? ? ? ? ? ? ? ? ens_4 d_2 1 . D DT . . D DT . ? ? ? ? ? ? ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details ens_1 ? ens_2 ? ens_3 ? ens_4 ? # loop_ _struct_ncs_ens_gen.ens_id _struct_ncs_ens_gen.dom_id_1 _struct_ncs_ens_gen.dom_id_2 _struct_ncs_ens_gen.oper_id ens_1 d_2 d_1 1 ens_2 d_2 d_1 2 ens_3 d_2 d_1 3 ens_4 d_2 d_1 4 # _struct.entry_id 8D31 _struct.title '[AG/TC] Self-Assembled 3D DNA Cubic Tensegrity Triangle with 24 bp Arm Length' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8D31 _struct_keywords.text 'Tensegrity triangle, synthetic construct, self-assembly, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 2 ? G N N 6 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? E DC 4 N4 ? ? ? 1_555 G DG 7 O6 ? ? A DC 104 C DG 215 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? E DC 5 N3 ? ? ? 1_555 G DG 6 N1 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E DC 5 N4 ? ? ? 1_555 G DG 6 O6 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E DC 5 O2 ? ? ? 1_555 G DG 6 N2 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? E DT 6 N3 ? ? ? 1_555 G DA 5 N1 ? ? A DT 106 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? E DT 6 O4 ? ? ? 1_555 G DA 5 N6 ? ? A DT 106 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E DA 7 N1 ? ? ? 1_555 G DT 4 N3 ? ? A DA 107 C DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E DA 7 N6 ? ? ? 1_555 G DT 4 O4 ? ? A DA 107 C DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E DG 8 N2 ? ? ? 1_555 G DC 3 N3 ? ? A DG 108 C DC 211 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog10 hydrog ? ? E DC 9 N3 ? ? ? 1_555 G DG 2 N1 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E DC 9 N4 ? ? ? 1_555 G DG 2 O6 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E DC 9 O2 ? ? ? 1_555 G DG 2 N2 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? E DC 10 N3 ? ? ? 1_555 G DG 1 N1 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E DC 10 N4 ? ? ? 1_555 G DG 1 O6 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E DC 10 O2 ? ? ? 1_555 G DG 1 N2 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E DT 11 N3 ? ? ? 1_555 F DA 7 N1 ? ? A DT 111 B DA 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E DT 11 O4 ? ? ? 1_555 F DA 7 N6 ? ? A DT 111 B DA 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F DC 6 N3 ? ? A DG 112 B DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F DC 6 O2 ? ? A DG 112 B DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F DC 6 N4 ? ? A DG 112 B DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E DT 13 N3 ? ? ? 1_555 F DA 5 N1 ? ? A DT 113 B DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E DT 13 O4 ? ? ? 1_555 F DA 5 N6 ? ? A DT 113 B DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DA 14 N1 ? ? ? 1_555 F DT 4 N3 ? ? A DA 114 B DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DA 14 N6 ? ? ? 1_555 F DT 4 O4 ? ? A DA 114 B DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DC 15 N3 ? ? ? 1_555 F DG 3 N2 ? ? A DC 115 B DG 121 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog26 hydrog ? ? E DG 16 N1 ? ? ? 1_555 F DC 2 N3 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DG 16 N2 ? ? ? 1_555 F DC 2 O2 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DG 16 O6 ? ? ? 1_555 F DC 2 N4 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DG 17 N1 ? ? ? 1_555 F DC 1 N3 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DG 17 N2 ? ? ? 1_555 F DC 1 O2 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DG 17 O6 ? ? ? 1_555 F DC 1 N4 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 18 N1 ? ? ? 1_555 H DT 9 N3 ? ? A DA 118 D DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 18 N6 ? ? ? 1_555 H DT 9 O4 ? ? A DA 118 D DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DC 19 N3 ? ? ? 1_555 H DG 8 N1 ? ? A DC 119 D DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DC 19 N4 ? ? ? 1_555 H DG 8 O6 ? ? A DC 119 D DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DC 19 O2 ? ? ? 1_555 H DG 8 N2 ? ? A DC 119 D DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DA 20 N1 ? ? ? 1_555 H DT 7 N3 ? ? A DA 120 D DT 107 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog38 hydrog ? ? E DT 21 N3 ? ? ? 1_555 H DA 6 N1 ? ? A DT 121 D DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DT 21 O4 ? ? ? 1_555 H DA 6 N6 ? ? A DT 121 D DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DC 22 N3 ? ? ? 1_555 H DG 5 N1 ? ? A DC 122 D DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DC 22 N4 ? ? ? 1_555 H DG 5 O6 ? ? A DC 122 D DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DC 22 O2 ? ? ? 1_555 H DG 5 N2 ? ? A DC 122 D DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DA 23 N1 ? ? ? 1_555 H DT 4 N3 ? ? A DA 123 D DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DA 23 N6 ? ? ? 1_555 H DT 4 O4 ? ? A DA 123 D DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 24 N1 ? ? ? 1_555 H DC 3 N3 ? ? A DG 124 D DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DG 24 N2 ? ? ? 1_555 H DC 3 O2 ? ? A DG 124 D DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 24 O6 ? ? ? 1_555 H DC 3 N4 ? ? A DG 124 D DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 3 N7 ? ? ? 1_555 C DG 7 N1 ? ? E DG 103 G DG 215 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog49 hydrog ? ? A DT 6 N3 ? ? ? 1_555 C DA 5 N1 ? ? E DT 106 G DA 213 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog50 hydrog ? ? A DA 7 N1 ? ? ? 1_555 C DT 4 N3 ? ? E DA 107 G DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DA 7 N6 ? ? ? 1_555 C DT 4 O4 ? ? E DA 107 G DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 8 N3 ? ? ? 1_555 C DC 3 N4 ? ? E DC 108 G DC 211 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog53 hydrog ? ? A DC 8 N3 ? ? ? 1_555 C DT 4 N3 ? ? E DC 108 G DT 212 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog54 hydrog ? ? A DC 9 N3 ? ? ? 1_555 C DG 2 N1 ? ? E DC 109 G DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DC 9 N4 ? ? ? 1_555 C DG 2 O6 ? ? E DC 109 G DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DC 9 O2 ? ? ? 1_555 C DG 2 N2 ? ? E DC 109 G DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A DC 10 N3 ? ? ? 1_555 C DG 1 N1 ? ? E DC 110 G DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DC 10 N4 ? ? ? 1_555 C DG 1 O6 ? ? E DC 110 G DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 10 O2 ? ? ? 1_555 C DG 1 N2 ? ? E DC 110 G DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 7 N1 ? ? E DT 111 F DA 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 7 N6 ? ? E DT 111 F DA 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 6 N3 ? ? E DG 112 F DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 6 O2 ? ? E DG 112 F DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 6 N4 ? ? E DG 112 F DC 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 5 N1 ? ? E DT 113 F DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 5 N6 ? ? E DT 113 F DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 4 N3 ? ? E DA 114 F DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 4 O4 ? ? E DA 114 F DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 3 N2 ? ? E DC 115 F DG 121 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog70 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 2 N3 ? ? E DG 116 F DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 2 O2 ? ? E DG 116 F DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 2 N4 ? ? E DG 116 F DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 1 N3 ? ? E DG 117 F DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 1 O2 ? ? E DG 117 F DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 1 N4 ? ? E DG 117 F DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A DA 18 N1 ? ? ? 1_555 D DT 9 N3 ? ? E DA 118 H DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A DA 18 N6 ? ? ? 1_555 D DT 9 O4 ? ? E DA 118 H DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A DC 19 N3 ? ? ? 1_555 D DG 8 N1 ? ? E DC 119 H DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A DC 19 N4 ? ? ? 1_555 D DG 8 O6 ? ? E DC 119 H DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A DC 19 O2 ? ? ? 1_555 D DG 8 N2 ? ? E DC 119 H DG 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A DA 20 N1 ? ? ? 1_555 D DT 7 N3 ? ? E DA 120 H DT 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A DA 20 N6 ? ? ? 1_555 D DT 7 O4 ? ? E DA 120 H DT 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A DT 21 N3 ? ? ? 1_555 D DA 6 N1 ? ? E DT 121 H DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A DT 21 O4 ? ? ? 1_555 D DA 6 N6 ? ? E DT 121 H DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A DC 22 N3 ? ? ? 1_555 D DG 5 N1 ? ? E DC 122 H DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A DC 22 N4 ? ? ? 1_555 D DG 5 O6 ? ? E DC 122 H DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A DC 22 O2 ? ? ? 1_555 D DG 5 N2 ? ? E DC 122 H DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A DA 23 N1 ? ? ? 1_555 D DT 4 N3 ? ? E DA 123 H DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A DA 23 N6 ? ? ? 1_555 D DT 4 O4 ? ? E DA 123 H DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A DG 24 N1 ? ? ? 1_555 D DC 3 N3 ? ? E DG 124 H DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A DG 24 N2 ? ? ? 1_555 D DC 3 O2 ? ? E DG 124 H DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A DG 24 O6 ? ? ? 1_555 D DC 3 N4 ? ? E DG 124 H DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? D DC 2 O2 ? ? ? 1_555 E DA 1 N6 ? ? H DC 102 A DA 101 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog94 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DA 1 N6 ? ? H DC 103 A DA 101 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8D31 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.005333 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 101 101 DA DA E . n A 1 2 DG 2 102 102 DG DG E . n A 1 3 DG 3 103 103 DG DG E . n A 1 4 DC 4 104 104 DC DC E . n A 1 5 DC 5 105 105 DC DC E . n A 1 6 DT 6 106 106 DT DT E . n A 1 7 DA 7 107 107 DA DA E . n A 1 8 DC 8 108 108 DC DC E . n A 1 9 DC 9 109 109 DC DC E . n A 1 10 DC 10 110 110 DC DC E . n A 1 11 DT 11 111 111 DT DT E . n A 1 12 DG 12 112 112 DG DG E . n A 1 13 DT 13 113 113 DT DT E . n A 1 14 DA 14 114 114 DA DA E . n A 1 15 DC 15 115 115 DC DC E . n A 1 16 DG 16 116 116 DG DG E . n A 1 17 DG 17 117 117 DG DG E . n A 1 18 DA 18 118 118 DA DA E . n A 1 19 DC 19 119 119 DC DC E . n A 1 20 DA 20 120 120 DA DA E . n A 1 21 DT 21 121 121 DT DT E . n A 1 22 DC 22 122 122 DC DC E . n A 1 23 DA 23 123 123 DA DA E . n A 1 24 DG 24 124 124 DG DG E . n B 2 1 DC 1 119 119 DC DC F . n B 2 2 DC 2 120 120 DC DC F . n B 2 3 DG 3 121 121 DG DG F . n B 2 4 DT 4 122 122 DT DT F . n B 2 5 DA 5 123 123 DA DA F . n B 2 6 DC 6 124 124 DC DC F . n B 2 7 DA 7 125 125 DA DA F . n C 3 1 DG 1 209 209 DG DG G . n C 3 2 DG 2 210 210 DG DG G . n C 3 3 DC 3 211 211 DC DC G . n C 3 4 DT 4 212 212 DT DT G . n C 3 5 DA 5 213 213 DA DA G . n C 3 6 DA 6 214 214 DA DA G . n C 3 7 DG 7 215 215 DG DG G . n C 3 8 DC 8 216 216 DC DC G . n D 4 1 DT 1 101 101 DT DT H . n D 4 2 DC 2 102 102 DC DC H . n D 4 3 DC 3 103 103 DC DC H . n D 4 4 DT 4 104 104 DT DT H . n D 4 5 DG 5 105 105 DG DG H . n D 4 6 DA 6 106 106 DA DA H . n D 4 7 DT 7 107 107 DT DT H . n D 4 8 DG 8 108 108 DG DG H . n D 4 9 DT 9 109 109 DT DT H . n E 5 1 DA 1 101 101 DA DA A . n E 5 2 DG 2 102 102 DG DG A . n E 5 3 DG 3 103 103 DG DG A . n E 5 4 DC 4 104 104 DC DC A . n E 5 5 DC 5 105 105 DC DC A . n E 5 6 DT 6 106 106 DT DT A . n E 5 7 DA 7 107 107 DA DA A . n E 5 8 DG 8 108 108 DG DG A . n E 5 9 DC 9 109 109 DC DC A . n E 5 10 DC 10 110 110 DC DC A . n E 5 11 DT 11 111 111 DT DT A . n E 5 12 DG 12 112 112 DG DG A . n E 5 13 DT 13 113 113 DT DT A . n E 5 14 DA 14 114 114 DA DA A . n E 5 15 DC 15 115 115 DC DC A . n E 5 16 DG 16 116 116 DG DG A . n E 5 17 DG 17 117 117 DG DG A . n E 5 18 DA 18 118 118 DA DA A . n E 5 19 DC 19 119 119 DC DC A . n E 5 20 DA 20 120 120 DA DA A . n E 5 21 DT 21 121 121 DT DT A . n E 5 22 DC 22 122 122 DC DC A . n E 5 23 DA 23 123 123 DA DA A . n E 5 24 DG 24 124 124 DG DG A . n F 2 1 DC 1 119 119 DC DC B . n F 2 2 DC 2 120 120 DC DC B . n F 2 3 DG 3 121 121 DG DG B . n F 2 4 DT 4 122 122 DT DT B . n F 2 5 DA 5 123 123 DA DA B . n F 2 6 DC 6 124 124 DC DC B . n F 2 7 DA 7 125 125 DA DA B . n G 6 1 DG 1 209 209 DG DG C . n G 6 2 DG 2 210 210 DG DG C . n G 6 3 DC 3 211 211 DC DC C . n G 6 4 DT 4 212 212 DT DT C . n G 6 5 DA 5 213 213 DA DA C . n G 6 6 DG 6 214 214 DG DG C . n G 6 7 DG 7 215 215 DG DG C . n G 6 8 DC 8 216 216 DC DC C . n H 4 1 DT 1 101 101 DT DT D . n H 4 2 DC 2 102 102 DC DC D . n H 4 3 DC 3 103 103 DC DC D . n H 4 4 DT 4 104 104 DT DT D . n H 4 5 DG 5 105 105 DG DG D . n H 4 6 DA 6 106 106 DA DA D . n H 4 7 DT 7 107 107 DT DT D . n H 4 8 DG 8 108 108 DG DG D . n H 4 9 DT 9 109 109 DT DT D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ruojie.sha@nyu.edu _pdbx_contact_author.name_first Ruojie _pdbx_contact_author.name_last Sha _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0807-734X # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-25 2 'Structure model' 1 1 2023-08-16 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' Other 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_initial_refinement_model # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.pdb_format_compatible' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/4,-z+1/4,y+3/4 3 x+3/4,z+1/4,-y+1/4 4 z+3/4,y+1/4,-x+1/4 5 -z+1/4,y+3/4,x+1/4 6 -y+1/4,x+3/4,z+1/4 7 y+1/4,-x+1/4,z+3/4 8 z,x,y 9 y,z,x 10 -y+1/2,-z,x+1/2 11 z+1/2,-x+1/2,-y 12 -y,z+1/2,-x+1/2 13 -z+1/2,-x,y+1/2 14 -z,x+1/2,-y+1/2 15 y+1/2,-z+1/2,-x 16 x+1/2,-y+1/2,-z 17 -x,y+1/2,-z+1/2 18 -x+1/2,-y,z+1/2 19 y+3/4,x+1/4,-z+1/4 20 -y+3/4,-x+3/4,-z+3/4 21 z+1/4,-y+1/4,x+3/4 22 -z+3/4,-y+3/4,-x+3/4 23 -x+1/4,z+3/4,y+1/4 24 -x+3/4,-z+3/4,-y+3/4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" E DA 101 ? ? "C1'" E DA 101 ? ? N9 E DA 101 ? ? 110.59 108.30 2.29 0.30 N 2 1 "O4'" E DC 105 ? ? "C1'" E DC 105 ? ? N1 E DC 105 ? ? 112.95 108.30 4.65 0.30 N 3 1 "O4'" E DT 106 ? ? "C1'" E DT 106 ? ? N1 E DT 106 ? ? 110.46 108.30 2.16 0.30 N 4 1 "O4'" E DT 113 ? ? "C1'" E DT 113 ? ? N1 E DT 113 ? ? 110.44 108.30 2.14 0.30 N 5 1 "O4'" G DG 215 ? ? "C1'" G DG 215 ? ? N9 G DG 215 ? ? 110.98 108.30 2.68 0.30 N 6 1 "O4'" G DC 216 ? ? "C1'" G DC 216 ? ? N1 G DC 216 ? ? 111.36 108.30 3.06 0.30 N 7 1 "O4'" H DT 101 ? ? "C1'" H DT 101 ? ? N1 H DT 101 ? ? 113.02 108.30 4.72 0.30 N 8 1 "O4'" H DC 102 ? ? "C1'" H DC 102 ? ? N1 H DC 102 ? ? 110.92 108.30 2.62 0.30 N 9 1 "O4'" H DT 104 ? ? "C1'" H DT 104 ? ? N1 H DT 104 ? ? 111.04 108.30 2.74 0.30 N 10 1 "O5'" A DC 105 ? ? P A DC 105 ? ? OP2 A DC 105 ? ? 98.94 105.70 -6.76 0.90 N 11 1 "O4'" A DT 106 ? ? "C1'" A DT 106 ? ? N1 A DT 106 ? ? 110.70 108.30 2.40 0.30 N 12 1 "O4'" A DG 124 ? ? "C1'" A DG 124 ? ? N9 A DG 124 ? ? 110.95 108.30 2.65 0.30 N 13 1 "O4'" C DG 210 ? ? "C1'" C DG 210 ? ? N9 C DG 210 ? ? 110.93 108.30 2.63 0.30 N 14 1 "O4'" C DG 215 ? ? "C1'" C DG 215 ? ? N9 C DG 215 ? ? 111.33 108.30 3.03 0.30 N 15 1 "O4'" D DC 103 ? ? "C1'" D DC 103 ? ? N1 D DC 103 ? ? 111.18 108.30 2.88 0.30 N 16 1 "O4'" D DT 104 ? ? "C1'" D DT 104 ? ? N1 D DT 104 ? ? 110.48 108.30 2.18 0.30 N 17 1 "O4'" D DG 105 ? ? "C1'" D DG 105 ? ? N9 D DG 105 ? ? 110.28 108.30 1.98 0.30 N 18 1 "O4'" D DG 108 ? ? "C1'" D DG 108 ? ? N9 D DG 108 ? ? 110.22 108.30 1.92 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8D31 'double helix' 8D31 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 C DG 7 1_555 -5.121 0.438 -2.214 26.072 6.736 -122.744 1 E_DG103:DG215_G E 103 ? G 215 ? ? ? 1 A DT 6 1_555 C DA 5 1_555 0.694 -0.133 2.221 -22.799 -57.924 -23.205 2 E_DT106:DA213_G E 106 ? G 213 ? ? ? 1 A DA 7 1_555 C DT 4 1_555 0.422 -0.533 -1.892 -17.934 -4.797 -11.317 3 E_DA107:DT212_G E 107 ? G 212 ? 20 1 1 A DC 8 1_555 C DC 3 1_555 1.157 -1.137 -1.711 -17.287 -2.869 -22.898 4 E_DC108:DC211_G E 108 ? G 211 ? ? ? 1 A DC 9 1_555 C DG 2 1_555 0.223 -0.436 -1.079 -9.381 -3.725 3.300 5 E_DC109:DG210_G E 109 ? G 210 ? 19 1 1 A DC 10 1_555 C DG 1 1_555 0.149 -0.157 -0.159 -9.965 -3.766 -2.402 6 E_DC110:DG209_G E 110 ? G 209 ? 19 1 1 A DT 11 1_555 B DA 7 1_555 -0.216 -0.331 0.804 -1.022 3.658 -0.738 7 E_DT111:DA125_F E 111 ? F 125 ? 20 1 1 A DG 12 1_555 B DC 6 1_555 -0.225 -0.278 0.802 8.876 5.837 0.385 8 E_DG112:DC124_F E 112 ? F 124 ? 19 1 1 A DT 13 1_555 B DA 5 1_555 -0.044 -0.344 1.259 11.524 0.280 -3.406 9 E_DT113:DA123_F E 113 ? F 123 ? 20 1 1 A DA 14 1_555 B DT 4 1_555 -0.040 -0.191 0.017 18.789 -18.288 -5.032 10 E_DA114:DT122_F E 114 ? F 122 ? 20 1 1 A DC 15 1_555 B DG 3 1_555 0.307 1.075 1.056 12.413 -32.833 8.856 11 E_DC115:DG121_F E 115 ? F 121 ? ? ? 1 A DG 16 1_555 B DC 2 1_555 -0.247 -0.086 -0.287 -17.130 -15.621 -1.347 12 E_DG116:DC120_F E 116 ? F 120 ? 19 1 1 A DG 17 1_555 B DC 1 1_555 -0.214 -0.196 -0.429 -10.735 -10.714 0.858 13 E_DG117:DC119_F E 117 ? F 119 ? 19 1 1 A DA 18 1_555 D DT 9 1_555 0.098 -0.160 0.351 1.209 -9.738 -3.029 14 E_DA118:DT109_H E 118 ? H 109 ? 20 1 1 A DC 19 1_555 D DG 8 1_555 0.220 -0.116 0.087 -1.088 -6.788 2.166 15 E_DC119:DG108_H E 119 ? H 108 ? 19 1 1 A DA 20 1_555 D DT 7 1_555 0.074 -0.185 0.270 -1.691 -9.431 1.974 16 E_DA120:DT107_H E 120 ? H 107 ? 20 1 1 A DT 21 1_555 D DA 6 1_555 -0.153 -0.102 0.181 -3.389 -7.401 -2.465 17 E_DT121:DA106_H E 121 ? H 106 ? 20 1 1 A DC 22 1_555 D DG 5 1_555 0.154 -0.139 0.005 -4.771 -0.557 -0.459 18 E_DC122:DG105_H E 122 ? H 105 ? 19 1 1 A DA 23 1_555 D DT 4 1_555 0.082 -0.173 -0.962 -17.110 -6.866 0.075 19 E_DA123:DT104_H E 123 ? H 104 ? 20 1 1 A DG 24 1_555 D DC 3 1_555 -0.249 -0.123 -0.384 -5.624 -2.179 3.332 20 E_DG124:DC103_H E 124 ? H 103 ? 19 1 1 E DA 1 1_555 D DC 2 1_555 -3.963 -3.607 -2.444 8.157 11.296 -23.803 21 A_DA101:DC102_H A 101 ? H 102 ? ? 1 1 E DC 4 1_555 G DG 7 1_555 -0.558 -0.036 -2.197 19.426 -14.389 -7.421 22 A_DC104:DG215_C A 104 ? C 215 ? ? 1 1 E DC 5 1_555 G DG 6 1_555 0.113 -0.183 -0.670 -0.778 2.203 -4.205 23 A_DC105:DG214_C A 105 ? C 214 ? 19 1 1 E DT 6 1_555 G DA 5 1_555 -0.227 0.029 -0.544 -0.486 -4.005 -8.199 24 A_DT106:DA213_C A 106 ? C 213 ? 20 1 1 E DA 7 1_555 G DT 4 1_555 0.088 0.058 -0.080 -0.061 -0.647 -5.535 25 A_DA107:DT212_C A 107 ? C 212 ? 20 1 1 E DG 8 1_555 G DC 3 1_555 2.799 0.230 -0.577 4.805 -0.188 12.576 26 A_DG108:DC211_C A 108 ? C 211 ? ? 1 1 E DC 9 1_555 G DG 2 1_555 0.219 -0.188 -0.595 0.580 -3.133 2.851 27 A_DC109:DG210_C A 109 ? C 210 ? 19 1 1 E DC 10 1_555 G DG 1 1_555 0.133 -0.175 -0.541 -0.585 -4.071 -1.575 28 A_DC110:DG209_C A 110 ? C 209 ? 19 1 1 E DT 11 1_555 F DA 7 1_555 -0.104 -0.184 0.345 0.389 0.232 1.188 29 A_DT111:DA125_B A 111 ? B 125 ? 20 1 1 E DG 12 1_555 F DC 6 1_555 -0.189 -0.228 -0.262 6.922 4.459 0.040 30 A_DG112:DC124_B A 112 ? B 124 ? 19 1 1 E DT 13 1_555 F DA 5 1_555 -0.110 -0.241 0.987 5.582 0.564 -1.876 31 A_DT113:DA123_B A 113 ? B 123 ? 20 1 1 E DA 14 1_555 F DT 4 1_555 0.076 -0.041 0.121 15.834 -15.245 -6.856 32 A_DA114:DT122_B A 114 ? B 122 ? 20 1 1 E DC 15 1_555 F DG 3 1_555 -1.409 0.530 0.840 15.129 -28.296 -2.517 33 A_DC115:DG121_B A 115 ? B 121 ? ? 1 1 E DG 16 1_555 F DC 2 1_555 -0.270 -0.068 -0.101 -16.536 -16.338 -3.778 34 A_DG116:DC120_B A 116 ? B 120 ? 19 1 1 E DG 17 1_555 F DC 1 1_555 -0.239 -0.141 0.044 -6.530 -12.972 -2.828 35 A_DG117:DC119_B A 117 ? B 119 ? 19 1 1 E DA 18 1_555 H DT 9 1_555 0.126 -0.247 0.680 4.387 -12.387 -8.477 36 A_DA118:DT109_D A 118 ? D 109 ? 20 1 1 E DC 19 1_555 H DG 8 1_555 0.180 -0.085 0.135 0.114 -7.663 -0.495 37 A_DC119:DG108_D A 119 ? D 108 ? 19 1 1 E DA 20 1_555 H DT 7 1_555 0.337 0.692 0.029 1.575 -14.657 16.472 38 A_DA120:DT107_D A 120 ? D 107 ? ? ? 1 E DT 21 1_555 H DA 6 1_555 -0.146 -0.065 0.016 -1.078 -10.486 -2.686 39 A_DT121:DA106_D A 121 ? D 106 ? 20 1 1 E DC 22 1_555 H DG 5 1_555 0.131 -0.103 0.082 -1.203 -5.214 -0.922 40 A_DC122:DG105_D A 122 ? D 105 ? 19 1 1 E DA 23 1_555 H DT 4 1_555 0.026 -0.158 -0.734 -13.356 -8.770 2.363 41 A_DA123:DT104_D A 123 ? D 104 ? 20 1 1 E DG 24 1_555 H DC 3 1_555 -0.255 -0.104 0.278 -2.293 -12.784 4.758 42 A_DG124:DC103_D A 124 ? D 103 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 6 1_555 C DA 5 1_555 A DA 7 1_555 C DT 4 1_555 -0.438 0.700 4.172 -0.346 -21.076 47.909 2.547 0.470 3.594 -24.616 0.404 52.090 1 EE_DT106DA107:DT212DA213_GG E 106 ? G 213 ? E 107 ? G 212 ? 1 A DA 7 1_555 C DT 4 1_555 A DC 8 1_555 C DC 3 1_555 -1.526 -0.569 3.358 -1.237 0.294 32.226 -1.078 2.520 3.408 0.530 2.228 32.250 2 EE_DA107DC108:DC211DT212_GG E 107 ? G 212 ? E 108 ? G 211 ? 1 A DC 8 1_555 C DC 3 1_555 A DC 9 1_555 C DG 2 1_555 2.362 -0.222 3.017 2.435 5.054 36.058 -1.013 -3.456 3.106 8.105 -3.905 36.477 3 EE_DC108DC109:DG210DC211_GG E 108 ? G 211 ? E 109 ? G 210 ? 1 A DC 9 1_555 C DG 2 1_555 A DC 10 1_555 C DG 1 1_555 0.577 0.929 3.535 -5.416 0.017 42.742 1.264 -1.357 3.440 0.024 7.395 43.068 4 EE_DC109DC110:DG209DG210_GG E 109 ? G 210 ? E 110 ? G 209 ? 1 A DC 10 1_555 C DG 1 1_555 A DT 11 1_555 B DA 7 1_555 -1.407 -1.501 3.169 -8.856 0.377 17.874 -4.525 -0.368 3.436 1.127 26.492 19.935 5 EE_DC110DT111:DA125DG209_FG E 110 ? G 209 ? E 111 ? F 125 ? 1 A DT 11 1_555 B DA 7 1_555 A DG 12 1_555 B DC 6 1_555 0.083 -0.950 2.974 0.038 8.219 24.940 -4.011 -0.174 2.537 18.403 -0.085 26.239 6 EE_DT111DG112:DC124DA125_FF E 111 ? F 125 ? E 112 ? F 124 ? 1 A DG 12 1_555 B DC 6 1_555 A DT 13 1_555 B DA 5 1_555 0.331 0.471 3.807 3.786 1.552 35.632 0.504 0.099 3.837 2.526 -6.162 35.858 7 EE_DG112DT113:DA123DC124_FF E 112 ? F 124 ? E 113 ? F 123 ? 1 A DT 13 1_555 B DA 5 1_555 A DA 14 1_555 B DT 4 1_555 -1.585 -0.153 2.658 7.467 4.580 42.087 -0.559 2.735 2.329 6.296 -10.264 42.948 8 EE_DT113DA114:DT122DA123_FF E 113 ? F 123 ? E 114 ? F 122 ? 1 A DA 14 1_555 B DT 4 1_555 A DC 15 1_555 B DG 3 1_555 1.099 0.444 3.717 5.986 -3.025 36.586 1.163 -0.800 3.796 -4.769 -9.438 37.175 9 EE_DA114DC115:DG121DT122_FF E 114 ? F 122 ? E 115 ? F 121 ? 1 A DC 15 1_555 B DG 3 1_555 A DG 16 1_555 B DC 2 1_555 -0.725 3.094 4.163 -1.172 -5.232 40.605 5.121 0.881 3.771 -7.500 1.680 40.943 10 EE_DC115DG116:DC120DG121_FF E 115 ? F 121 ? E 116 ? F 120 ? 1 A DG 16 1_555 B DC 2 1_555 A DG 17 1_555 B DC 1 1_555 0.519 1.261 3.365 -4.409 3.610 44.607 1.312 -1.092 3.389 4.732 5.781 44.951 11 EE_DG116DG117:DC119DC120_FF E 116 ? F 120 ? E 117 ? F 119 ? 1 A DG 17 1_555 B DC 1 1_555 A DA 18 1_555 D DT 9 1_555 -1.331 -0.726 2.689 -10.783 6.839 26.286 -2.747 0.584 2.744 14.032 22.126 29.174 12 EE_DG117DA118:DT109DC119_HF E 117 ? F 119 ? E 118 ? H 109 ? 1 A DA 18 1_555 D DT 9 1_555 A DC 19 1_555 D DG 8 1_555 -0.548 -0.738 3.127 1.328 0.510 30.915 -1.477 1.271 3.089 0.956 -2.489 30.947 13 EE_DA118DC119:DG108DT109_HH E 118 ? H 109 ? E 119 ? H 108 ? 1 A DC 19 1_555 D DG 8 1_555 A DA 20 1_555 D DT 7 1_555 -0.614 0.884 3.194 -0.948 2.218 37.090 1.095 0.839 3.254 3.483 1.489 37.166 14 EE_DC119DA120:DT107DG108_HH E 119 ? H 108 ? E 120 ? H 107 ? 1 A DA 20 1_555 D DT 7 1_555 A DT 21 1_555 D DA 6 1_555 -0.172 0.809 3.362 0.960 -0.929 33.368 1.566 0.461 3.332 -1.617 -1.671 33.394 15 EE_DA120DT121:DA106DT107_HH E 120 ? H 107 ? E 121 ? H 106 ? 1 A DT 21 1_555 D DA 6 1_555 A DC 22 1_555 D DG 5 1_555 -0.354 0.146 3.331 -1.778 2.503 33.496 -0.165 0.315 3.347 4.332 3.078 33.632 16 EE_DT121DC122:DG105DA106_HH E 121 ? H 106 ? E 122 ? H 105 ? 1 A DC 22 1_555 D DG 5 1_555 A DA 23 1_555 D DT 4 1_555 0.147 -0.190 3.408 8.115 13.504 36.825 -1.898 0.758 3.118 20.275 -12.184 39.946 17 EE_DC122DA123:DT104DG105_HH E 122 ? H 105 ? E 123 ? H 104 ? 1 A DA 23 1_555 D DT 4 1_555 A DG 24 1_555 D DC 3 1_555 0.996 0.287 3.209 -5.694 6.412 31.322 -0.572 -2.747 2.986 11.607 10.306 32.447 18 EE_DA123DG124:DC103DT104_HH E 123 ? H 104 ? E 124 ? H 103 ? 1 A DG 24 1_555 D DC 3 1_555 E DA 1 1_555 D DC 2 1_555 -3.767 0.749 2.772 -0.512 37.353 12.938 -3.551 5.516 1.680 71.561 0.982 39.458 19 EA_DG124DA101:DC102DC103_HH E 124 ? H 103 ? A 101 ? H 102 ? 1 E DC 4 1_555 G DG 7 1_555 E DC 5 1_555 G DG 6 1_555 -1.141 -0.481 4.647 -12.970 16.980 27.692 -4.593 -0.989 3.900 30.397 23.218 34.849 20 AA_DC104DC105:DG214DG215_CC A 104 ? C 215 ? A 105 ? C 214 ? 1 E DC 5 1_555 G DG 6 1_555 E DT 6 1_555 G DA 5 1_555 0.035 -0.477 3.178 3.317 3.002 31.199 -1.418 0.532 3.106 5.546 -6.128 31.511 21 AA_DC105DT106:DA213DG214_CC A 105 ? C 214 ? A 106 ? C 213 ? 1 E DT 6 1_555 G DA 5 1_555 E DA 7 1_555 G DT 4 1_555 0.391 -0.498 3.071 -1.544 14.898 42.314 -1.897 -0.642 2.739 19.906 2.063 44.771 22 AA_DT106DA107:DT212DA213_CC A 106 ? C 213 ? A 107 ? C 212 ? 1 E DA 7 1_555 G DT 4 1_555 E DG 8 1_555 G DC 3 1_555 0.508 -0.301 3.385 6.342 1.075 39.305 -0.573 0.022 3.414 1.585 -9.352 39.808 23 AA_DA107DG108:DC211DT212_CC A 107 ? C 212 ? A 108 ? C 211 ? 1 E DG 8 1_555 G DC 3 1_555 E DC 9 1_555 G DG 2 1_555 0.303 -1.257 3.314 2.458 2.350 26.080 -3.394 -0.006 3.205 5.178 -5.417 26.297 24 AA_DG108DC109:DG210DC211_CC A 108 ? C 211 ? A 109 ? C 210 ? 1 E DC 9 1_555 G DG 2 1_555 E DC 10 1_555 G DG 1 1_555 0.382 -0.039 3.258 -1.571 0.728 41.438 -0.132 -0.705 3.241 1.029 2.219 41.473 25 AA_DC109DC110:DG209DG210_CC A 109 ? C 210 ? A 110 ? C 209 ? 1 E DC 10 1_555 G DG 1 1_555 E DT 11 1_555 F DA 7 1_555 -1.605 -2.181 3.277 -8.367 4.158 16.015 -9.130 0.243 3.070 13.526 27.220 18.525 26 AA_DC110DT111:DA125DG209_BC A 110 ? C 209 ? A 111 ? B 125 ? 1 E DT 11 1_555 F DA 7 1_555 E DG 12 1_555 F DC 6 1_555 -0.003 -0.947 3.015 1.669 8.602 24.682 -4.134 0.402 2.540 19.360 -3.756 26.169 27 AA_DT111DG112:DC124DA125_BB A 111 ? B 125 ? A 112 ? B 124 ? 1 E DG 12 1_555 F DC 6 1_555 E DT 13 1_555 F DA 5 1_555 0.389 0.333 4.052 0.752 0.867 36.367 0.384 -0.492 4.065 1.389 -1.204 36.384 28 AA_DG112DT113:DA123DC124_BB A 112 ? B 124 ? A 113 ? B 123 ? 1 E DT 13 1_555 F DA 5 1_555 E DA 14 1_555 F DT 4 1_555 -1.727 0.034 2.745 6.407 1.958 41.273 -0.117 2.959 2.461 2.756 -9.018 41.790 29 AA_DT113DA114:DT122DA123_BB A 113 ? B 123 ? A 114 ? B 122 ? 1 E DA 14 1_555 F DT 4 1_555 E DC 15 1_555 F DG 3 1_555 0.814 -0.188 3.246 3.476 -3.076 27.758 0.343 -0.852 3.322 -6.355 -7.181 28.136 30 AA_DA114DC115:DG121DT122_BB A 114 ? B 122 ? A 115 ? B 121 ? 1 E DC 15 1_555 F DG 3 1_555 E DG 16 1_555 F DC 2 1_555 -0.404 3.109 4.404 -0.193 -3.898 48.285 4.186 0.473 4.158 -4.756 0.236 48.433 31 AA_DC115DG116:DC120DG121_BB A 115 ? B 121 ? A 116 ? B 120 ? 1 E DG 16 1_555 F DC 2 1_555 E DG 17 1_555 F DC 1 1_555 0.269 1.329 3.113 -6.108 3.830 44.404 1.405 -0.884 3.149 5.028 8.020 44.956 32 AA_DG116DG117:DC119DC120_BB A 116 ? B 120 ? A 117 ? B 119 ? 1 E DG 17 1_555 F DC 1 1_555 E DA 18 1_555 H DT 9 1_555 -1.278 -0.378 2.772 -10.665 7.711 28.459 -2.019 0.545 2.861 14.731 20.372 31.297 33 AA_DG117DA118:DT109DC119_DB A 117 ? B 119 ? A 118 ? D 109 ? 1 E DA 18 1_555 H DT 9 1_555 E DC 19 1_555 H DG 8 1_555 -0.328 -0.678 3.216 2.144 -0.970 31.134 -1.080 1.010 3.206 -1.804 -3.987 31.221 34 AA_DA118DC119:DG108DT109_DD A 118 ? D 109 ? A 119 ? D 108 ? 1 E DC 19 1_555 H DG 8 1_555 E DA 20 1_555 H DT 7 1_555 0.357 0.883 3.151 1.377 2.874 36.562 1.020 -0.384 3.220 4.570 -2.190 36.695 35 AA_DC119DA120:DT107DG108_DD A 119 ? D 108 ? A 120 ? D 107 ? 1 E DA 20 1_555 H DT 7 1_555 E DT 21 1_555 H DA 6 1_555 -1.013 0.605 3.148 -1.074 2.085 31.934 0.732 1.647 3.212 3.783 1.949 32.018 36 AA_DA120DT121:DA106DT107_DD A 120 ? D 107 ? A 121 ? D 106 ? 1 E DT 21 1_555 H DA 6 1_555 E DC 22 1_555 H DG 5 1_555 -0.448 -0.119 3.161 -3.601 -1.241 34.674 -0.015 0.215 3.192 -2.075 6.019 34.876 37 AA_DT121DC122:DG105DA106_DD A 121 ? D 106 ? A 122 ? D 105 ? 1 E DC 22 1_555 H DG 5 1_555 E DA 23 1_555 H DT 4 1_555 0.294 -0.335 3.327 5.868 9.159 36.647 -1.684 0.301 3.165 14.187 -9.090 38.174 38 AA_DC122DA123:DT104DG105_DD A 122 ? D 105 ? A 123 ? D 104 ? 1 E DA 23 1_555 H DT 4 1_555 E DG 24 1_555 H DC 3 1_555 1.313 -0.289 2.660 -8.064 6.622 32.175 -1.311 -3.249 2.177 11.574 14.094 33.782 39 AA_DA123DG124:DC103DT104_DD A 123 ? D 104 ? A 124 ? D 103 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' CTS1120890 1 'National Science Foundation (NSF, United States)' 'United States' CCF-1117210 2 'National Science Foundation (NSF, United States)' 'United States' EFRI-1332411 3 'National Science Foundation (NSF, United States)' 'United States' CHE-1708776 4 'Office of Naval Research (ONR)' 'United States' N000141110729 5 'Office of Naval Research (ONR)' 'United States' N000140911118 6 'Department of Energy (DOE, United States)' 'United States' DESC0007991 7 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GBI _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 41 3 2' _space_group.name_Hall 'P 4bd 2ab 3' _space_group.IT_number 213 _space_group.crystal_system cubic _space_group.id 1 #