HEADER IMMUNE SYSTEM 31-MAY-22 8D36 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 FUSION PEPTIDE IN COMPLEX WITH TITLE 2 NEUTRALIZING ANTIBODY COV44-62 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTRALIZING ANTIBODY COV44-62 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NEUTRALIZING ANTIBODY COV44-62 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S2 FUSION PEPTIDE; COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 18 2; SOURCE 19 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 20 ORGANISM_TAXID: 2697049 KEYWDS SARS-COV-2, CORONAVIRUS, ANTIBODY, FUSION PEPTIDE, NEUTRALIZING KEYWDS 2 ANTIBODY, COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.YUAN,C.C.D.LEE,I.A.WILSON REVDAT 4 18-OCT-23 8D36 1 REMARK REVDAT 3 24-AUG-22 8D36 1 JRNL REVDAT 2 03-AUG-22 8D36 1 JRNL REVDAT 1 27-JUL-22 8D36 0 JRNL AUTH C.DACON,C.TUCKER,L.PENG,C.D.LEE,T.H.LIN,M.YUAN,Y.CONG, JRNL AUTH 2 L.WANG,L.PURSER,J.K.WILLIAMS,C.W.PYO,I.KOSIK,Z.HU,M.ZHAO, JRNL AUTH 3 D.MOHAN,A.J.R.COOPER,M.PETERSON,J.SKINNER,S.DIXIT,E.KOLLINS, JRNL AUTH 4 L.HUZELLA,D.PERRY,R.BYRUM,S.LEMBIRIK,D.DRAWBAUGH,B.EATON, JRNL AUTH 5 Y.ZHANG,E.S.YANG,M.CHEN,K.LEUNG,R.S.WEINBERG,A.PEGU, JRNL AUTH 6 D.E.GERAGHTY,E.DAVIDSON,I.DOUAGI,S.MOIR,J.W.YEWDELL, JRNL AUTH 7 C.SCHMALJOHN,P.D.CROMPTON,M.R.HOLBROOK,D.NEMAZEE, JRNL AUTH 8 J.R.MASCOLA,I.A.WILSON,J.TAN JRNL TITL BROADLY NEUTRALIZING ANTIBODIES TARGET THE CORONAVIRUS JRNL TITL 2 FUSION PEPTIDE. JRNL REF SCIENCE V. 377 728 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35857439 JRNL DOI 10.1126/SCIENCE.ABQ3773 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 80322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 4003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2000 - 4.4700 0.96 2810 136 0.1622 0.1682 REMARK 3 2 4.4700 - 3.5500 0.99 2837 138 0.1535 0.1683 REMARK 3 3 3.5500 - 3.1000 0.98 2773 139 0.1758 0.1902 REMARK 3 4 3.1000 - 2.8100 0.97 2754 140 0.1874 0.2115 REMARK 3 5 2.8100 - 2.6100 0.98 2792 143 0.1897 0.2295 REMARK 3 6 2.6100 - 2.4600 0.94 2639 129 0.1917 0.2259 REMARK 3 7 2.4600 - 2.3400 0.97 2751 135 0.1974 0.2283 REMARK 3 8 2.3400 - 2.2300 0.98 2757 159 0.2004 0.2297 REMARK 3 9 2.2300 - 2.1500 0.99 2804 150 0.1987 0.2167 REMARK 3 10 2.1500 - 2.0700 0.99 2763 144 0.2050 0.2230 REMARK 3 11 2.0700 - 2.0100 0.99 2774 155 0.1984 0.2090 REMARK 3 12 2.0100 - 1.9500 0.99 2810 127 0.2089 0.2363 REMARK 3 13 1.9500 - 1.9000 0.99 2778 159 0.2261 0.2253 REMARK 3 14 1.9000 - 1.8500 0.99 2763 155 0.2181 0.2565 REMARK 3 15 1.8500 - 1.8100 0.99 2786 145 0.2142 0.2537 REMARK 3 16 1.8100 - 1.7700 0.95 2692 128 0.2120 0.2722 REMARK 3 17 1.7700 - 1.7400 0.95 2688 150 0.2235 0.2565 REMARK 3 18 1.7400 - 1.7000 0.98 2727 136 0.2267 0.2543 REMARK 3 19 1.7000 - 1.6700 0.98 2779 147 0.2347 0.2389 REMARK 3 20 1.6700 - 1.6500 0.98 2744 154 0.2513 0.3003 REMARK 3 21 1.6500 - 1.6200 0.98 2726 148 0.2652 0.2678 REMARK 3 22 1.6200 - 1.5900 0.97 2732 152 0.2884 0.2828 REMARK 3 23 1.5900 - 1.5700 0.95 2638 134 0.2983 0.3565 REMARK 3 24 1.5700 - 1.5500 0.90 2547 130 0.3028 0.3238 REMARK 3 25 1.5500 - 1.5300 0.85 2386 135 0.2930 0.3203 REMARK 3 26 1.5300 - 1.5100 0.79 2221 124 0.2924 0.3577 REMARK 3 27 1.5100 - 1.4900 0.76 2104 125 0.2896 0.2909 REMARK 3 28 1.4900 - 1.4700 0.71 2001 105 0.3024 0.3422 REMARK 3 29 1.4700 - 1.4500 0.61 1743 81 0.3284 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 4, 1 M REMARK 280 LITHIUM CHLORIDE, AND 10% PEG6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.76750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.76750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.95750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 921 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 140 REMARK 465 SER H 141 REMARK 465 LYS H 142 REMARK 465 SER H 143 REMARK 465 THR H 144 REMARK 465 SER H 145 REMARK 465 GLY H 146 REMARK 465 SER H 228 REMARK 465 CYS H 229 REMARK 465 THR L 213 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 VAL F 826 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 417 O HOH L 523 1.72 REMARK 500 O HOH L 497 O HOH L 548 1.81 REMARK 500 O HOH L 488 O HOH L 491 1.85 REMARK 500 O HOH L 403 O HOH L 462 1.86 REMARK 500 O HOH H 548 O HOH H 550 1.89 REMARK 500 O HOH H 324 O HOH L 401 1.90 REMARK 500 O HOH H 368 O HOH H 511 1.90 REMARK 500 O HOH H 321 O HOH F 912 1.90 REMARK 500 O HOH L 552 O HOH L 553 1.92 REMARK 500 O HOH H 459 O HOH F 916 1.98 REMARK 500 O HOH L 457 O HOH L 539 1.99 REMARK 500 O HOH H 457 O HOH H 509 2.01 REMARK 500 OD1 ASN L 98 O HOH L 301 2.03 REMARK 500 O HOH H 535 O HOH H 547 2.03 REMARK 500 OE1 GLU L 207 O HOH L 302 2.06 REMARK 500 O HOH H 452 O HOH H 493 2.08 REMARK 500 O HOH H 497 O HOH H 538 2.12 REMARK 500 O HOH H 510 O HOH H 541 2.14 REMARK 500 O HOH L 348 O HOH L 530 2.14 REMARK 500 O HOH L 318 O HOH L 532 2.14 REMARK 500 O HOH H 476 O HOH H 508 2.15 REMARK 500 O HOH L 332 O HOH L 489 2.16 REMARK 500 O HOH H 324 O HOH H 398 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 918 O HOH F 920 2655 1.92 REMARK 500 O HOH H 512 O HOH L 512 4555 2.04 REMARK 500 O HOH H 400 O HOH L 414 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 153 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 67 18.76 -144.77 REMARK 500 ASP H 157 74.68 59.08 REMARK 500 ASP L 28 -91.77 -138.19 REMARK 500 ASN L 33 52.17 -105.37 REMARK 500 VAL L 53 -49.71 77.13 REMARK 500 ASP L 155 -112.94 48.26 REMARK 500 ASN L 174 -12.52 84.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 551 DISTANCE = 5.92 ANGSTROMS DBREF 8D36 H 1 229 PDB 8D36 8D36 1 229 DBREF 8D36 L 1 216 PDB 8D36 8D36 1 216 DBREF 8D36 F 812 826 UNP P0DTC2 SPIKE_SARS2 812 826 SEQRES 1 H 227 GLN MET GLN LEU MET GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 227 PRO GLY ALA SER VAL THR VAL SER CYS LYS ALA SER GLY SEQRES 3 H 227 ASP THR PHE SER ASP TYR ARG ILE HIS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ARG MET ASN SEQRES 5 H 227 PRO LYS SER GLY ASP THR ASN PHE ALA GLN LYS PHE GLN SEQRES 6 H 227 GLY ARG VAL THR MET THR ARG ASP MET SER ILE ASN THR SEQRES 7 H 227 ALA TYR MET THR LEU SER GLY LEU THR PHE ASP ASP THR SEQRES 8 H 227 ALA LEU TYR TYR CYS ALA SER LEU LEU ILE VAL GLY GLY SEQRES 9 H 227 PHE ASP PRO LEU ASP ASP PHE GLU VAL TRP GLY GLN GLY SEQRES 10 H 227 THR MET VAL THR ILE SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 227 VAL GLU PRO LYS SER CYS SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER VAL THR ILE SER CYS SER GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY GLY TYR ASN PHE VAL SER TRP TYR GLN SEQRES 4 L 216 HIS HIS PRO GLY LYS ALA PRO LYS ILE LEU ILE TYR GLU SEQRES 5 L 216 VAL THR LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 216 SER TYR GLY GLY THR ASN ASN LEU LEU PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 F 15 PRO SER LYS ARG SER PHE ILE GLU ASP LEU LEU PHE ASN SEQRES 2 F 15 LYS VAL FORMUL 4 HOH *525(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 GLN H 65 5 4 HELIX 3 AA3 MET H 74 ILE H 76 5 3 HELIX 4 AA4 THR H 87 THR H 91 5 5 HELIX 5 AA5 SER H 169 ALA H 171 5 3 HELIX 6 AA6 SER H 200 LEU H 202 5 3 HELIX 7 AA7 LYS H 214 ASN H 217 5 4 HELIX 8 AA8 GLN L 81 GLU L 85 5 5 HELIX 9 AA9 SER L 125 ALA L 131 1 7 HELIX 10 AB1 THR L 185 HIS L 192 1 8 HELIX 11 AB2 LYS F 814 PHE F 823 1 10 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 SER H 17 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 SER H 84 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 118 ILE H 122 1 O THR H 121 N LYS H 12 SHEET 3 AA2 6 ALA H 92 SER H 98 -1 N TYR H 94 O THR H 118 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AA2 6 LEU H 45 MET H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 PHE H 60 -1 O ASN H 59 N ARG H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 118 ILE H 122 1 O THR H 121 N LYS H 12 SHEET 3 AA3 4 ALA H 92 SER H 98 -1 N TYR H 94 O THR H 118 SHEET 4 AA3 4 VAL H 113 TRP H 114 -1 O VAL H 113 N SER H 98 SHEET 1 AA4 4 SER H 131 LEU H 135 0 SHEET 2 AA4 4 THR H 148 TYR H 158 -1 O GLY H 152 N LEU H 135 SHEET 3 AA4 4 TYR H 189 PRO H 198 -1 O LEU H 191 N VAL H 155 SHEET 4 AA4 4 VAL H 176 THR H 178 -1 N HIS H 177 O VAL H 194 SHEET 1 AA5 4 SER H 131 LEU H 135 0 SHEET 2 AA5 4 THR H 148 TYR H 158 -1 O GLY H 152 N LEU H 135 SHEET 3 AA5 4 TYR H 189 PRO H 198 -1 O LEU H 191 N VAL H 155 SHEET 4 AA5 4 VAL H 182 LEU H 183 -1 N VAL H 182 O SER H 190 SHEET 1 AA6 3 THR H 164 TRP H 167 0 SHEET 2 AA6 3 ILE H 208 HIS H 213 -1 O ASN H 210 N SER H 166 SHEET 3 AA6 3 THR H 218 LYS H 223 -1 O VAL H 220 N VAL H 211 SHEET 1 AA7 5 SER L 9 GLY L 12 0 SHEET 2 AA7 5 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AA7 5 ALA L 86 GLY L 94 -1 N ALA L 86 O LEU L 107 SHEET 4 AA7 5 VAL L 35 HIS L 40 -1 N TYR L 38 O TYR L 89 SHEET 5 AA7 5 LYS L 47 ILE L 50 -1 O LEU L 49 N TRP L 37 SHEET 1 AA8 4 SER L 9 GLY L 12 0 SHEET 2 AA8 4 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AA8 4 ALA L 86 GLY L 94 -1 N ALA L 86 O LEU L 107 SHEET 4 AA8 4 ASN L 98 PHE L 101 -1 O LEU L 100 N SER L 92 SHEET 1 AA9 3 VAL L 18 SER L 23 0 SHEET 2 AA9 3 THR L 72 VAL L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA9 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AB1 4 SER L 118 PHE L 122 0 SHEET 2 AB1 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AB1 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB1 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB2 4 SER L 118 PHE L 122 0 SHEET 2 AB2 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AB2 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB2 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB3 4 SER L 157 VAL L 159 0 SHEET 2 AB3 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB3 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AB3 4 SER L 204 VAL L 210 -1 O SER L 204 N HIS L 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 153 CYS H 209 1555 1555 2.05 SSBOND 3 CYS L 22 CYS L 90 1555 1555 2.05 SSBOND 4 CYS L 138 CYS L 197 1555 1555 2.02 CISPEP 1 PHE H 159 PRO H 160 0 -3.67 CISPEP 2 GLU H 161 PRO H 162 0 2.04 CISPEP 3 TYR L 144 PRO L 145 0 0.10 CRYST1 99.535 71.915 76.258 90.00 114.16 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010047 0.000000 0.004507 0.00000 SCALE2 0.000000 0.013905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014373 0.00000