HEADER TRANSFERASE 01-JUN-22 8D3Z TITLE CRYSTAL STRUCTURE OF GALS1 IN COMPLEX WITH MANGANESE FROM POPULUS TITLE 2 TRICHOCARPAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTAN SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TRICHOCARPA; SOURCE 3 ORGANISM_COMMON: WESTERN BALSAM POPLAR, POPULUS BALSAMIFERA SUBSP. SOURCE 4 TRICHOCARPA; SOURCE 5 ORGANISM_TAXID: 3694; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE GALACTAN SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,P.K.PRABHAKAR,B.R.URBANOWICZ,P.D.ADAMS REVDAT 3 25-OCT-23 8D3Z 1 REMARK REVDAT 2 05-APR-23 8D3Z 1 JRNL REVDAT 1 15-MAR-23 8D3Z 0 JRNL AUTH P.K.PRABHAKAR,J.H.PEREIRA,R.TAUJALE,W.SHAO,V.S.BHARADWAJ, JRNL AUTH 2 D.CHAPLA,J.Y.YANG,Y.J.BOMBLE,K.W.MOREMEN,N.KANNAN,M.HAMMEL, JRNL AUTH 3 P.D.ADAMS,H.V.SCHELLER,B.R.URBANOWICZ JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHT INTO A MODULAR JRNL TITL 2 BETA-1,4-GALACTAN SYNTHASE IN PLANTS. JRNL REF NAT.PLANTS V. 9 486 2023 JRNL REFN ESSN 2055-0278 JRNL PMID 36849618 JRNL DOI 10.1038/S41477-023-01358-4 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0700 - 6.1700 1.00 2813 153 0.2150 0.2292 REMARK 3 2 6.1700 - 4.9000 1.00 2727 145 0.2078 0.2198 REMARK 3 3 4.9000 - 4.2800 1.00 2747 139 0.1785 0.2016 REMARK 3 4 4.2800 - 3.8900 1.00 2692 142 0.2149 0.2494 REMARK 3 5 3.8900 - 3.6100 1.00 2720 141 0.2145 0.2678 REMARK 3 6 3.6100 - 3.4000 1.00 2686 148 0.2561 0.3215 REMARK 3 7 3.4000 - 3.2300 1.00 2682 140 0.2534 0.2940 REMARK 3 8 3.2200 - 3.0900 1.00 2661 141 0.2685 0.3006 REMARK 3 9 3.0800 - 2.9700 1.00 2692 143 0.2702 0.3621 REMARK 3 10 2.9700 - 2.8600 1.00 2673 140 0.3110 0.3536 REMARK 3 11 2.8600 - 2.7700 1.00 2693 141 0.3373 0.4278 REMARK 3 12 2.7700 - 2.7000 1.00 2674 147 0.3197 0.3355 REMARK 3 13 2.6900 - 2.6200 1.00 2676 142 0.2917 0.3369 REMARK 3 14 2.6200 - 2.5600 1.00 2652 143 0.3226 0.3849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.411 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7094 REMARK 3 ANGLE : 1.013 9632 REMARK 3 CHIRALITY : 0.054 1038 REMARK 3 PLANARITY : 0.010 1212 REMARK 3 DIHEDRAL : 19.554 2622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 49.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8D3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.0 10 % PEG 6,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.65333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.30667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.30667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 TYR A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 ALA A 24 REMARK 465 ASP A 25 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 ASP B 10 REMARK 465 GLN B 11 REMARK 465 LYS B 12 REMARK 465 TYR B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ASN B 23 REMARK 465 ALA B 24 REMARK 465 ASP B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 94 O HOH A 601 1.93 REMARK 500 OE1 GLN A 228 OH TYR A 235 2.08 REMARK 500 O VAL A 103 O HOH A 601 2.11 REMARK 500 OG1 THR B 52 O PHE B 110 2.11 REMARK 500 OD1 ASN B 113 N GLN B 116 2.15 REMARK 500 O SER B 61 NH1 ARG B 68 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 CG - CD - NE ANGL. DEV. = 14.5 DEGREES REMARK 500 TYR A 423 CA - CB - CG ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 105.00 -172.10 REMARK 500 HIS A 65 -43.78 54.97 REMARK 500 ILE A 84 119.38 -162.36 REMARK 500 ASP A 94 -151.38 -78.91 REMARK 500 ASP A 130 -154.58 -160.98 REMARK 500 SER A 132 -19.45 -46.75 REMARK 500 GLN A 133 17.90 51.01 REMARK 500 ARG A 134 -74.15 -59.87 REMARK 500 GLN A 228 -9.54 -58.12 REMARK 500 PRO A 268 99.95 -48.02 REMARK 500 MET A 344 177.75 178.84 REMARK 500 VAL A 371 112.41 -39.49 REMARK 500 TYR A 391 119.67 -161.92 REMARK 500 ASP A 411 -71.75 -53.99 REMARK 500 TYR A 423 64.43 174.93 REMARK 500 ASN B 27 26.13 -73.14 REMARK 500 PHE B 67 -168.86 -72.04 REMARK 500 ARG B 68 58.93 -165.09 REMARK 500 SER B 82 -163.21 -70.62 REMARK 500 SER B 83 140.96 -172.09 REMARK 500 LEU B 92 75.05 -110.25 REMARK 500 ASP B 94 -169.94 -110.29 REMARK 500 TRP B 95 -80.81 -48.74 REMARK 500 TYR B 97 142.14 -171.04 REMARK 500 ASN B 115 57.10 -163.27 REMARK 500 SER B 192 63.35 -101.38 REMARK 500 PRO B 268 141.18 -39.75 REMARK 500 THR B 322 96.04 -59.82 REMARK 500 MET B 344 -169.67 -174.03 REMARK 500 THR B 356 41.04 -140.30 REMARK 500 GLU B 357 -78.27 -75.04 REMARK 500 CYS B 376 93.37 -66.76 REMARK 500 GLN B 421 30.58 -68.79 REMARK 500 TYR B 423 -101.71 29.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 268 GLU A 269 -145.91 REMARK 500 ALA A 422 TYR A 423 105.70 REMARK 500 GLN B 116 ASP B 117 139.84 REMARK 500 VAL B 420 GLN B 421 140.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 85 0.09 SIDE CHAIN REMARK 500 ARG B 361 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG E 1 REMARK 610 NAG A 502 REMARK 610 NAG B 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 364 NE2 63.6 REMARK 620 N 1 DBREF1 8D3Z A 2 424 UNP A0A2K2AMS7_POPTR DBREF2 8D3Z A A0A2K2AMS7 73 495 DBREF1 8D3Z B 2 424 UNP A0A2K2AMS7_POPTR DBREF2 8D3Z B A0A2K2AMS7 73 495 SEQADV 8D3Z GLY A 1 UNP A0A2K2AMS EXPRESSION TAG SEQADV 8D3Z GLY B 1 UNP A0A2K2AMS EXPRESSION TAG SEQRES 1 A 424 GLY SER PHE THR SER THR SER LEU SER ASP GLN LYS TYR SEQRES 2 A 424 LEU SER SER SER SER SER SER SER SER ASN ALA ASP PRO SEQRES 3 A 424 ASN LYS ARG ILE PHE GLN ALA TYR GLY ASN ALA ALA ALA SEQRES 4 A 424 LEU PHE VAL GLN MET GLY ALA TYR ARG GLY GLY PRO THR SEQRES 5 A 424 THR PHE ALA VAL VAL GLY LEU ALA SER LYS PRO ILE HIS SEQRES 6 A 424 VAL PHE ARG LEU PRO TRP TYR LYS CYS GLU TRP ILE SER SEQRES 7 A 424 ASN ASN GLY SER SER ILE ARG ALA LYS ALA TYR LYS MET SEQRES 8 A 424 LEU PRO ASP TRP GLY TYR GLY ARG VAL TYR THR VAL VAL SEQRES 9 A 424 VAL VAL ASN CYS THR PHE PRO VAL ASN PRO ASN GLN ASP SEQRES 10 A 424 ASN ALA GLY GLY ARG LEU MET LEU ASN ALA TYR TYR ASP SEQRES 11 A 424 GLU SER GLN ARG LYS TYR GLU LYS PHE THR ALA LEU GLU SEQRES 12 A 424 GLU LEU PRO GLY SER TYR ASN GLU SER LYS PHE ARG PRO SEQRES 13 A 424 PRO TYR GLN TYR GLU TYR LEU TYR CYS GLY SER SER LEU SEQRES 14 A 424 TYR GLY ASN LEU SER ALA SER ARG PHE ARG GLU TRP MET SEQRES 15 A 424 ALA TYR HIS ALA TRP PHE PHE GLY PRO SER SER HIS PHE SEQRES 16 A 424 VAL PHE HIS ASP ALA GLY GLY VAL SER PRO GLU VAL ARG SEQRES 17 A 424 ALA ALA LEU ASP PRO TRP VAL ARG ALA GLY ARG ALA THR SEQRES 18 A 424 VAL GLN ASP ILE ARG GLY GLN ALA GLU PHE ASP GLY TYR SEQRES 19 A 424 TYR TYR ASN GLN PHE LEU VAL VAL ASN ASP CYS LEU HIS SEQRES 20 A 424 ARG TYR ARG TYR SER ALA ASN TRP THR PHE TYR PHE ASP SEQRES 21 A 424 VAL ASP GLU TYR ILE TYR LEU PRO GLU GLY ASN THR LEU SEQRES 22 A 424 GLU SER VAL LEU LYS ASP PHE SER ASN TYR THR GLN PHE SEQRES 23 A 424 THR ILE GLU GLN ASN PRO MET SER SER ALA LEU CYS PHE SEQRES 24 A 424 ASN ASP SER THR GLN ASP TYR PRO ARG GLN TRP GLY PHE SEQRES 25 A 424 GLU LYS LEU LEU PHE ARG GLU SER ARG THR GLY ILE ARG SEQRES 26 A 424 ARG ASP ARG LYS TYR ALA ILE GLN ALA LYS ASN ALA TYR SEQRES 27 A 424 ALA THR GLY VAL HIS MET SER GLU ASN VAL ILE GLY LYS SEQRES 28 A 424 THR LEU HIS GLN THR GLU THR LYS ILE ARG TYR TYR HIS SEQRES 29 A 424 TYR HIS ASN SER ILE GLN VAL PRO GLY GLU LEU CYS ARG SEQRES 30 A 424 GLU PHE LEU PRO LEU SER ALA LYS ASN ASN VAL THR TRP SEQRES 31 A 424 TYR ASN GLY LEU PRO TYR VAL TYR ASP ASP ASN MET LYS SEQRES 32 A 424 LYS LEU ALA SER THR ILE LYS ASP PHE GLU ARG ASN THR SEQRES 33 A 424 ILE GLY ASN VAL GLN ALA TYR SER SEQRES 1 B 424 GLY SER PHE THR SER THR SER LEU SER ASP GLN LYS TYR SEQRES 2 B 424 LEU SER SER SER SER SER SER SER SER ASN ALA ASP PRO SEQRES 3 B 424 ASN LYS ARG ILE PHE GLN ALA TYR GLY ASN ALA ALA ALA SEQRES 4 B 424 LEU PHE VAL GLN MET GLY ALA TYR ARG GLY GLY PRO THR SEQRES 5 B 424 THR PHE ALA VAL VAL GLY LEU ALA SER LYS PRO ILE HIS SEQRES 6 B 424 VAL PHE ARG LEU PRO TRP TYR LYS CYS GLU TRP ILE SER SEQRES 7 B 424 ASN ASN GLY SER SER ILE ARG ALA LYS ALA TYR LYS MET SEQRES 8 B 424 LEU PRO ASP TRP GLY TYR GLY ARG VAL TYR THR VAL VAL SEQRES 9 B 424 VAL VAL ASN CYS THR PHE PRO VAL ASN PRO ASN GLN ASP SEQRES 10 B 424 ASN ALA GLY GLY ARG LEU MET LEU ASN ALA TYR TYR ASP SEQRES 11 B 424 GLU SER GLN ARG LYS TYR GLU LYS PHE THR ALA LEU GLU SEQRES 12 B 424 GLU LEU PRO GLY SER TYR ASN GLU SER LYS PHE ARG PRO SEQRES 13 B 424 PRO TYR GLN TYR GLU TYR LEU TYR CYS GLY SER SER LEU SEQRES 14 B 424 TYR GLY ASN LEU SER ALA SER ARG PHE ARG GLU TRP MET SEQRES 15 B 424 ALA TYR HIS ALA TRP PHE PHE GLY PRO SER SER HIS PHE SEQRES 16 B 424 VAL PHE HIS ASP ALA GLY GLY VAL SER PRO GLU VAL ARG SEQRES 17 B 424 ALA ALA LEU ASP PRO TRP VAL ARG ALA GLY ARG ALA THR SEQRES 18 B 424 VAL GLN ASP ILE ARG GLY GLN ALA GLU PHE ASP GLY TYR SEQRES 19 B 424 TYR TYR ASN GLN PHE LEU VAL VAL ASN ASP CYS LEU HIS SEQRES 20 B 424 ARG TYR ARG TYR SER ALA ASN TRP THR PHE TYR PHE ASP SEQRES 21 B 424 VAL ASP GLU TYR ILE TYR LEU PRO GLU GLY ASN THR LEU SEQRES 22 B 424 GLU SER VAL LEU LYS ASP PHE SER ASN TYR THR GLN PHE SEQRES 23 B 424 THR ILE GLU GLN ASN PRO MET SER SER ALA LEU CYS PHE SEQRES 24 B 424 ASN ASP SER THR GLN ASP TYR PRO ARG GLN TRP GLY PHE SEQRES 25 B 424 GLU LYS LEU LEU PHE ARG GLU SER ARG THR GLY ILE ARG SEQRES 26 B 424 ARG ASP ARG LYS TYR ALA ILE GLN ALA LYS ASN ALA TYR SEQRES 27 B 424 ALA THR GLY VAL HIS MET SER GLU ASN VAL ILE GLY LYS SEQRES 28 B 424 THR LEU HIS GLN THR GLU THR LYS ILE ARG TYR TYR HIS SEQRES 29 B 424 TYR HIS ASN SER ILE GLN VAL PRO GLY GLU LEU CYS ARG SEQRES 30 B 424 GLU PHE LEU PRO LEU SER ALA LYS ASN ASN VAL THR TRP SEQRES 31 B 424 TYR ASN GLY LEU PRO TYR VAL TYR ASP ASP ASN MET LYS SEQRES 32 B 424 LYS LEU ALA SER THR ILE LYS ASP PHE GLU ARG ASN THR SEQRES 33 B 424 ILE GLY ASN VAL GLN ALA TYR SER HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HET NAG E 1 13 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET MAN F 6 11 HET MAN F 7 11 HET MN A 501 1 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET MN B 501 1 HET NAG B 502 14 HET NAG B 503 14 HET NAG B 504 14 HET NAG B 505 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 16(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 8(C6 H12 O6) FORMUL 7 MN 2(MN 2+) FORMUL 17 HOH *37(H2 O) HELIX 1 AA1 ASN A 150 ARG A 155 5 6 HELIX 2 AA2 SER A 174 GLY A 190 1 17 HELIX 3 AA3 SER A 204 ALA A 217 1 14 HELIX 4 AA4 ARG A 226 ASP A 232 5 7 HELIX 5 AA5 TYR A 236 TYR A 249 1 14 HELIX 6 AA6 THR A 272 PHE A 280 1 9 HELIX 7 AA7 ASP A 305 GLN A 309 5 5 HELIX 8 AA8 TRP A 310 LEU A 315 1 6 HELIX 9 AA9 PRO A 381 LYS A 385 5 5 HELIX 10 AB1 MET A 402 LYS A 404 5 3 HELIX 11 AB2 LEU A 405 GLY A 418 1 14 HELIX 12 AB3 ASN B 150 PHE B 154 5 5 HELIX 13 AB4 SER B 174 GLY B 190 1 17 HELIX 14 AB5 SER B 204 ALA B 217 1 14 HELIX 15 AB6 ARG B 226 PHE B 231 5 6 HELIX 16 AB7 TYR B 236 TYR B 249 1 14 HELIX 17 AB8 ASP B 305 GLN B 309 5 5 HELIX 18 AB9 TRP B 310 LEU B 315 1 6 HELIX 19 AC1 ALA B 334 ALA B 337 5 4 HELIX 20 AC2 PRO B 381 ASN B 386 5 6 HELIX 21 AC3 ASP B 400 GLY B 418 1 19 SHEET 1 AA1 6 GLN A 32 TYR A 34 0 SHEET 2 AA1 6 PHE B 41 ARG B 48 -1 O GLN B 43 N GLN A 32 SHEET 3 AA1 6 THR B 53 SER B 61 -1 O ALA B 55 N TYR B 47 SHEET 4 AA1 6 TYR B 101 THR B 109 -1 O VAL B 104 N GLY B 58 SHEET 5 AA1 6 ILE B 84 MET B 91 -1 N TYR B 89 O ASN B 107 SHEET 6 AA1 6 CYS B 74 TRP B 76 -1 N CYS B 74 O ALA B 86 SHEET 1 AA2 5 LYS A 87 MET A 91 0 SHEET 2 AA2 5 TYR A 101 THR A 109 -1 O ASN A 107 N TYR A 89 SHEET 3 AA2 5 THR A 53 SER A 61 -1 N VAL A 56 O VAL A 106 SHEET 4 AA2 5 PHE A 41 ARG A 48 -1 N TYR A 47 O ALA A 55 SHEET 5 AA2 5 GLN B 32 TYR B 34 -1 O TYR B 34 N PHE A 41 SHEET 1 AA3 4 SER A 83 ARG A 85 0 SHEET 2 AA3 4 TYR A 72 SER A 78 -1 N TRP A 76 O ILE A 84 SHEET 3 AA3 4 GLY A 121 TYR A 128 -1 O MET A 124 N GLU A 75 SHEET 4 AA3 4 TYR A 136 GLU A 144 -1 O ALA A 141 N LEU A 123 SHEET 1 AA4 8 ALA A 220 ASP A 224 0 SHEET 2 AA4 8 SER A 193 ASP A 199 1 N PHE A 197 O THR A 221 SHEET 3 AA4 8 TYR A 162 LEU A 169 1 N GLY A 166 O VAL A 196 SHEET 4 AA4 8 TRP A 255 TYR A 258 1 O PHE A 257 N CYS A 165 SHEET 5 AA4 8 LYS A 329 ILE A 332 -1 O ILE A 332 N THR A 256 SHEET 6 AA4 8 TYR A 283 MET A 293 -1 N ILE A 288 O LYS A 329 SHEET 7 AA4 8 ARG A 361 TYR A 365 1 O HIS A 364 N MET A 293 SHEET 8 AA4 8 GLU A 263 TYR A 266 -1 N TYR A 266 O ARG A 361 SHEET 1 AA5 7 ALA A 220 ASP A 224 0 SHEET 2 AA5 7 SER A 193 ASP A 199 1 N PHE A 197 O THR A 221 SHEET 3 AA5 7 TYR A 162 LEU A 169 1 N GLY A 166 O VAL A 196 SHEET 4 AA5 7 TRP A 255 TYR A 258 1 O PHE A 257 N CYS A 165 SHEET 5 AA5 7 LYS A 329 ILE A 332 -1 O ILE A 332 N THR A 256 SHEET 6 AA5 7 TYR A 283 MET A 293 -1 N ILE A 288 O LYS A 329 SHEET 7 AA5 7 LYS A 351 LEU A 353 1 O LEU A 353 N THR A 287 SHEET 1 AA6 2 LEU A 297 PHE A 299 0 SHEET 2 AA6 2 GLU A 378 LEU A 380 1 O LEU A 380 N CYS A 298 SHEET 1 AA7 3 PHE A 317 GLU A 319 0 SHEET 2 AA7 3 LEU A 394 TYR A 398 -1 O VAL A 397 N ARG A 318 SHEET 3 AA7 3 THR A 389 TYR A 391 -1 N THR A 389 O TYR A 396 SHEET 1 AA8 2 ALA A 337 ALA A 339 0 SHEET 2 AA8 2 ASN A 347 VAL A 348 -1 O ASN A 347 N TYR A 338 SHEET 1 AA9 2 GLY B 121 ALA B 127 0 SHEET 2 AA9 2 GLU B 137 GLU B 144 -1 O ALA B 141 N LEU B 123 SHEET 1 AB1 8 ALA B 220 ASP B 224 0 SHEET 2 AB1 8 SER B 193 ASP B 199 1 N PHE B 197 O THR B 221 SHEET 3 AB1 8 TYR B 160 LEU B 169 1 N LEU B 169 O HIS B 198 SHEET 4 AB1 8 ALA B 253 TYR B 258 1 O PHE B 257 N CYS B 165 SHEET 5 AB1 8 LYS B 329 ILE B 332 -1 O ILE B 332 N THR B 256 SHEET 6 AB1 8 GLN B 285 MET B 293 -1 N ILE B 288 O LYS B 329 SHEET 7 AB1 8 ARG B 361 TYR B 365 1 O TYR B 362 N ASN B 291 SHEET 8 AB1 8 GLU B 263 TYR B 266 -1 N TYR B 264 O TYR B 363 SHEET 1 AB2 7 ALA B 220 ASP B 224 0 SHEET 2 AB2 7 SER B 193 ASP B 199 1 N PHE B 197 O THR B 221 SHEET 3 AB2 7 TYR B 160 LEU B 169 1 N LEU B 169 O HIS B 198 SHEET 4 AB2 7 ALA B 253 TYR B 258 1 O PHE B 257 N CYS B 165 SHEET 5 AB2 7 LYS B 329 ILE B 332 -1 O ILE B 332 N THR B 256 SHEET 6 AB2 7 GLN B 285 MET B 293 -1 N ILE B 288 O LYS B 329 SHEET 7 AB2 7 THR B 352 LEU B 353 1 O LEU B 353 N THR B 287 SHEET 1 AB3 3 PHE B 317 GLU B 319 0 SHEET 2 AB3 3 LEU B 394 TYR B 398 -1 O VAL B 397 N ARG B 318 SHEET 3 AB3 3 THR B 389 TYR B 391 -1 N TYR B 391 O LEU B 394 SSBOND 1 CYS A 74 CYS A 108 1555 1555 2.04 SSBOND 2 CYS A 165 CYS A 245 1555 1555 2.03 SSBOND 3 CYS A 298 CYS A 376 1555 1555 2.05 SSBOND 4 CYS B 74 CYS B 108 1555 1555 2.04 SSBOND 5 CYS B 165 CYS B 245 1555 1555 2.03 SSBOND 6 CYS B 298 CYS B 376 1555 1555 2.04 LINK ND2 ASN A 107 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 172 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 254 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 282 C1 NAG A 504 1555 1555 1.45 LINK ND2 ASN A 300 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN B 107 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 172 C1 NAG B 503 1555 1555 1.45 LINK ND2 ASN B 282 C1 NAG B 504 1555 1555 1.45 LINK ND2 ASN B 300 C1 NAG B 505 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.43 LINK O2 MAN D 5 C1 MAN D 6 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 7 1555 1555 1.44 LINK O2 MAN F 4 C1 MAN F 5 1555 1555 1.44 LINK O2 MAN F 5 C1 MAN F 6 1555 1555 1.45 LINK OD2 ASP A 262 MN MN A 501 1555 1555 2.54 LINK NE2 HIS A 364 MN MN A 501 1555 1555 2.65 LINK OD2 ASP B 262 MN MN B 501 1555 1555 2.30 CISPEP 1 LEU A 69 PRO A 70 0 -0.91 CISPEP 2 PRO A 156 PRO A 157 0 -3.50 CISPEP 3 LEU B 69 PRO B 70 0 -9.78 CISPEP 4 PRO B 156 PRO B 157 0 0.09 CRYST1 169.982 169.982 73.960 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005883 0.003397 0.000000 0.00000 SCALE2 0.000000 0.006793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013521 0.00000