data_8D5O # _entry.id 8D5O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8D5O pdb_00008d5o 10.2210/pdb8d5o/pdb WWPDB D_1000265894 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8D5O _pdbx_database_status.recvd_initial_deposition_date 2022-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Menichelli, E.' 1 ? 'Spraggon, G.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 119 _citation.language ? _citation.page_first e2213117119 _citation.page_last e2213117119 _citation.title 'Discovery of small molecules that target a tertiary-structured RNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2213117119 _citation.pdbx_database_id_PubMed 36413497 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Menichelli, E.' 1 ? primary 'Lam, B.J.' 2 0000-0001-6592-2098 primary 'Wang, Y.' 3 ? primary 'Wang, V.S.' 4 ? primary 'Shaffer, J.' 5 ? primary 'Tjhung, K.F.' 6 ? primary 'Bursulaya, B.' 7 ? primary 'Nguyen, T.N.' 8 ? primary 'Vo, T.' 9 ? primary 'Alper, P.B.' 10 ? primary 'McAllister, C.S.' 11 0000-0003-3483-4444 primary 'Jones, D.H.' 12 ? primary 'Spraggon, G.' 13 ? primary 'Michellys, P.Y.' 14 0000-0002-8660-9292 primary 'Joslin, J.' 15 0000-0002-6842-688X primary 'Joyce, G.F.' 16 0000-0003-0603-2874 primary 'Rogers, J.' 17 0000-0002-5364-2790 # _cell.angle_alpha 84.720 _cell.angle_alpha_esd ? _cell.angle_beta 90.030 _cell.angle_beta_esd ? _cell.angle_gamma 70.650 _cell.angle_gamma_esd ? _cell.entry_id 8D5O _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.081 _cell.length_a_esd ? _cell.length_b 29.535 _cell.length_b_esd ? _cell.length_c 79.975 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8D5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (33-MER)' 10637.426 2 ? ? ? ? 2 non-polymer syn '4-[4-(6,7-dimethoxyquinazolin-4-yl)piperazin-1-yl]butan-1-ol' 346.424 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 U n 1 7 A n 1 8 C n 1 9 C n 1 10 A n 1 11 G n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 C n 1 21 C n 1 22 C n 1 23 U n 1 24 U n 1 25 G n 1 26 G n 1 27 C n 1 28 A n 1 29 G n 1 30 C n 1 31 G n 1 32 C n 1 33 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8D5O _struct_ref.pdbx_db_accession 8D5O _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8D5O A 1 ? 33 ? 8D5O 1 ? 33 ? 1 33 2 1 8D5O B 1 ? 33 ? 8D5O 1 ? 33 ? 1 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 QEU non-polymer . '4-[4-(6,7-dimethoxyquinazolin-4-yl)piperazin-1-yl]butan-1-ol' ? 'C18 H26 N4 O3' 346.424 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8D5O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium cacodylate, PEG 8000, 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-03 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 23.86 _reflns.entry_id 8D5O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 39.96 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4549 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 86.93 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_Rmerge_I_obs 0.04389 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05151 _reflns.pdbx_Rpim_I_all 0.02679 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.797 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 365 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.989 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 78.010 _refine.B_iso_mean 25.1637 _refine.B_iso_min 0.960 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8D5O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 39.8000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4498 _refine.ls_number_reflns_R_free 465 _refine.ls_number_reflns_R_work 4033 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 82.5300 _refine.ls_percent_reflns_R_free 10.3400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2413 _refine.ls_R_factor_R_free 0.2722 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2378 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.970 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 1O15' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.4100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 39.8000 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1510 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 66 _refine_hist.pdbx_B_iso_mean_ligand 25.52 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1408 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? ? ? ? 1 TORSIONAL ? A 784 1.351 ? 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 2 TORSIONAL ? B 784 1.351 ? 1 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7000 3.0900 1404 . 147 1257 77.0000 . . . 0.3614 0.0000 0.3226 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.0900 3.8900 1505 . 154 1351 82.0000 . . . 0.2758 0.0000 0.2543 . . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.8900 39.8000 1589 . 164 1425 88.0000 . . . 0.2302 0.0000 0.1877 . . . . . . . 3 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 '(chain A and resid 1 through 33)' 1 2 '(chain B and resid 1 through 33)' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A G 1 . A C 33 . A G 1 A C 33 ? '(chain A and resid 1 through 33)' 1 2 1 B G 1 . B C 33 . B G 1 B C 33 ? '(chain B and resid 1 through 33)' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 8D5O _struct.title 'Crystal structure of theophylline aptamer in complex with TAL4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8D5O _struct_keywords.text 'RNA, aptamer, theophylline' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 1 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 2 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 3 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 4 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 29 N1 ? ? A A 5 A G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 29 O6 ? ? A A 5 A G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A U 23 O4 ? ? A U 6 A U 23 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 8 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 9 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 10 N6 ? ? ? 1_555 A C 21 O2 ? ? A A 10 A C 21 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? A G 14 N3 ? ? ? 1_555 A A 17 N6 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 23 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 23 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog37 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 3 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 4 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B A 5 N1 ? ? ? 1_555 B G 29 N1 ? ? B A 5 B G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog50 hydrog ? ? B A 5 N6 ? ? ? 1_555 B G 29 O6 ? ? B A 5 B G 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? B U 6 N3 ? ? ? 1_555 B U 23 O4 ? ? B U 6 B U 23 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog52 hydrog ? ? B U 6 O2 ? ? ? 1_555 B A 28 N6 ? ? B U 6 B A 28 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog53 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 8 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 25 N1 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 25 O6 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 25 N2 ? ? B C 9 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B A 10 N6 ? ? ? 1_555 B C 21 O2 ? ? B A 10 B C 21 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog60 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 11 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 12 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 14 N2 ? ? ? 1_555 B A 17 N7 ? ? B G 14 B A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog70 hydrog ? ? B U 23 N3 ? ? ? 1_555 B A 28 N7 ? ? B U 23 B A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog71 hydrog ? ? B U 23 O4 ? ? ? 1_555 B A 28 N6 ? ? B U 23 B A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8D5O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.043326 _atom_sites.fract_transf_matrix[1][2] -0.015215 _atom_sites.fract_transf_matrix[1][3] 0.001517 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035885 _atom_sites.fract_transf_matrix[2][3] -0.003523 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012564 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 U 6 6 6 U U B . n B 1 7 A 7 7 7 A A B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 C 12 12 12 C C B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 A 17 17 17 A A B . n B 1 18 G 18 18 18 G G B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 C 22 22 22 C C B . n B 1 23 U 23 23 23 U U B . n B 1 24 U 24 24 24 U U B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 C 27 27 27 C C B . n B 1 28 A 28 28 28 A A B . n B 1 29 G 29 29 29 G G B . n B 1 30 C 30 30 30 C C B . n B 1 31 G 31 31 31 G G B . n B 1 32 C 32 32 32 C C B . n B 1 33 C 33 33 33 C C B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email glen.spraggon@novartis.com _pdbx_contact_author.name_first Glen _pdbx_contact_author.name_last Spraggon _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7880-8454 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QEU 1 101 34 QEU LIG A . D 2 QEU 1 101 34 QEU LIG B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-30 2 'Structure model' 1 1 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model 4 2 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 2 2 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 3 2 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 4 2 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 5 2 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 6 2 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 7 2 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 8 2 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -1.3237 9.2658 -14.2594 0.0762 ? -0.0221 ? 0.0048 ? 0.0852 ? 0.0262 ? 0.1927 ? 0.8799 ? 0.4611 ? 1.2340 ? 2.8346 ? -0.5874 ? 2.3185 ? -0.0865 ? 0.1722 ? -0.0384 ? -0.2866 ? 0.1376 ? -0.1052 ? 0.0610 ? 0.2430 ? 0.0295 ? 2 'X-RAY DIFFRACTION' ? refined 5.1759 15.4230 -32.8994 0.7956 ? -0.2093 ? 0.0513 ? 0.4931 ? 0.1105 ? 0.2557 ? 0.4622 ? -0.0721 ? -0.3440 ? 0.2371 ? -0.4352 ? 1.3150 ? 0.0573 ? 0.0407 ? 0.0786 ? -0.0331 ? -0.0906 ? -0.0842 ? -0.1717 ? 0.2370 ? 0.0535 ? 3 'X-RAY DIFFRACTION' ? refined -1.0770 4.9826 -12.1860 0.1174 ? 0.0674 ? -0.0105 ? 0.1019 ? 0.0387 ? 0.2770 ? 0.4890 ? -0.1911 ? 0.0312 ? 0.3883 ? -0.1569 ? 0.9527 ? 0.1462 ? 0.1475 ? -0.1557 ? -0.2025 ? -0.1606 ? 0.0248 ? 0.1046 ? 0.0847 ? 0.0381 ? 4 'X-RAY DIFFRACTION' ? refined 0.6210 18.7359 10.3451 0.0803 ? -0.0067 ? 0.0360 ? 0.0744 ? 0.0103 ? 0.2110 ? 1.6265 ? 1.1692 ? -0.2567 ? 1.4492 ? 0.1833 ? 0.2621 ? 0.1050 ? -0.1962 ? -0.1908 ? 0.2109 ? -0.0352 ? -0.0524 ? 0.0012 ? 0.0384 ? -0.0699 ? 5 'X-RAY DIFFRACTION' ? refined 0.6312 10.4361 29.4368 0.8696 ? -0.2271 ? 0.0594 ? 0.4707 ? 0.0657 ? 0.2482 ? 0.4850 ? 0.0800 ? -0.4494 ? 0.3233 ? -0.3731 ? 0.7044 ? -0.0504 ? -0.1395 ? -0.0957 ? -0.0303 ? -0.0893 ? -0.0463 ? 0.1897 ? 0.2527 ? 0.1723 ? 6 'X-RAY DIFFRACTION' ? refined 3.4665 21.8893 8.5504 0.0576 ? -0.0497 ? 0.0240 ? 0.1129 ? 0.0213 ? 0.2235 ? 1.5622 ? 0.0049 ? 0.8817 ? 0.6715 ? 0.2589 ? 3.1254 ? 0.0745 ? -0.2235 ? 0.2552 ? 0.1233 ? -0.0709 ? -0.0003 ? -0.0726 ? 0.1040 ? 0.0190 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 10 ? ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 11 ? ? ? A 20 ? ? ;chain 'A' and (resid 11 through 20 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 21 ? ? ? A 33 ? ? ;chain 'A' and (resid 21 through 33 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? B 1 ? ? ? B 10 ? ? ;chain 'B' and (resid 1 through 10 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? B 11 ? ? ? B 20 ? ? ;chain 'B' and (resid 11 through 20 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? B 21 ? ? ? B 33 ? ? ;chain 'B' and (resid 21 through 33 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 8D5O _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A A 5 ? ? C4 A A 5 ? ? 1.391 1.344 0.047 0.006 N 2 1 C5 A A 7 ? ? C6 A A 7 ? ? 1.349 1.406 -0.057 0.009 N 3 1 C6 A G 29 ? ? N1 A G 29 ? ? 1.435 1.391 0.044 0.007 N 4 1 N1 B C 3 ? ? C6 B C 3 ? ? 1.315 1.367 -0.052 0.006 N 5 1 N7 B G 4 ? ? C8 B G 4 ? ? 1.347 1.305 0.042 0.006 N 6 1 C5 B A 5 ? ? N7 B A 5 ? ? 1.429 1.388 0.041 0.006 N 7 1 C5 B G 29 ? ? N7 B G 29 ? ? 1.425 1.388 0.037 0.006 N 8 1 N3 B G 31 ? ? C4 B G 31 ? ? 1.393 1.350 0.043 0.007 N 9 1 C5 B G 31 ? ? N7 B G 31 ? ? 1.440 1.388 0.052 0.006 N 10 1 N1 B C 32 ? ? C6 B C 32 ? ? 1.313 1.367 -0.054 0.006 N 11 1 N3 B C 32 ? ? C4 B C 32 ? ? 1.278 1.335 -0.057 0.007 N 12 1 C4 B C 32 ? ? C5 B C 32 ? ? 1.374 1.425 -0.051 0.008 N 13 1 C5 B C 32 ? ? C6 B C 32 ? ? 1.289 1.339 -0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A G 1 ? ? N3 A G 1 ? ? C4 A G 1 ? ? 108.88 111.90 -3.02 0.50 N 2 1 C4 A G 1 ? ? C5 A G 1 ? ? N7 A G 1 ? ? 114.55 110.80 3.75 0.40 N 3 1 C5 A G 1 ? ? N7 A G 1 ? ? C8 A G 1 ? ? 100.24 104.30 -4.06 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 108.81 106.40 2.41 0.40 N 5 1 N9 A G 2 ? ? C4 A G 2 ? ? C5 A G 2 ? ? 102.81 105.40 -2.59 0.40 N 6 1 N1 A G 2 ? ? C6 A G 2 ? ? O6 A G 2 ? ? 124.25 119.90 4.35 0.60 N 7 1 C2 A C 3 ? ? N3 A C 3 ? ? C4 A C 3 ? ? 115.70 119.90 -4.20 0.50 N 8 1 N3 A C 3 ? ? C4 A C 3 ? ? C5 A C 3 ? ? 126.16 121.90 4.26 0.40 N 9 1 C5 A C 3 ? ? C6 A C 3 ? ? N1 A C 3 ? ? 117.89 121.00 -3.11 0.50 N 10 1 N3 A C 3 ? ? C4 A C 3 ? ? N4 A C 3 ? ? 113.64 118.00 -4.36 0.70 N 11 1 C5 A G 4 ? ? C6 A G 4 ? ? N1 A G 4 ? ? 114.94 111.50 3.44 0.50 N 12 1 C4 A A 5 ? ? C5 A A 5 ? ? N7 A A 5 ? ? 113.98 110.70 3.28 0.50 N 13 1 C2 A A 7 ? ? N3 A A 7 ? ? C4 A A 7 ? ? 107.19 110.60 -3.41 0.50 N 14 1 "O3'" A C 21 ? ? P A C 22 ? ? OP2 A C 22 ? ? 119.38 110.50 8.88 1.10 Y 15 1 C6 A C 22 ? ? N1 A C 22 ? ? C2 A C 22 ? ? 123.01 120.30 2.71 0.40 N 16 1 N1 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 114.61 118.90 -4.29 0.60 N 17 1 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 126.64 121.90 4.74 0.70 N 18 1 "O3'" A U 23 ? ? P A U 24 ? ? OP1 A U 24 ? ? 118.15 110.50 7.65 1.10 Y 19 1 N3 A C 27 ? ? C4 A C 27 ? ? C5 A C 27 ? ? 124.77 121.90 2.87 0.40 N 20 1 C6 A G 29 ? ? N1 A G 29 ? ? C2 A G 29 ? ? 120.56 125.10 -4.54 0.60 N 21 1 C5 A G 29 ? ? C6 A G 29 ? ? N1 A G 29 ? ? 114.55 111.50 3.05 0.50 N 22 1 "O3'" A G 29 ? ? P A C 30 ? ? OP1 A C 30 ? ? 125.99 110.50 15.49 1.10 Y 23 1 "O5'" A C 30 ? ? P A C 30 ? ? OP1 A C 30 ? ? 96.02 105.70 -9.68 0.90 N 24 1 "O5'" A C 30 ? ? P A C 30 ? ? OP2 A C 30 ? ? 98.97 105.70 -6.73 0.90 N 25 1 N1 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 122.60 118.90 3.70 0.60 N 26 1 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 116.83 121.90 -5.07 0.70 N 27 1 C4 A G 31 ? ? C5 A G 31 ? ? N7 A G 31 ? ? 114.58 110.80 3.78 0.40 N 28 1 C5 A G 31 ? ? N7 A G 31 ? ? C8 A G 31 ? ? 100.06 104.30 -4.24 0.50 N 29 1 N9 A G 31 ? ? C4 A G 31 ? ? C5 A G 31 ? ? 102.52 105.40 -2.88 0.40 N 30 1 C5 A G 31 ? ? C6 A G 31 ? ? O6 A G 31 ? ? 123.46 128.60 -5.14 0.60 N 31 1 C2 A C 32 ? ? N3 A C 32 ? ? C4 A C 32 ? ? 116.05 119.90 -3.85 0.50 N 32 1 N3 A C 32 ? ? C4 A C 32 ? ? C5 A C 32 ? ? 124.72 121.90 2.82 0.40 N 33 1 N1 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 115.13 118.90 -3.77 0.60 N 34 1 "O5'" A C 33 ? ? P A C 33 ? ? OP1 A C 33 ? ? 118.89 110.70 8.19 1.20 N 35 1 C6 A C 33 ? ? N1 A C 33 ? ? C2 A C 33 ? ? 117.11 120.30 -3.19 0.40 N 36 1 C8 B G 1 ? ? N9 B G 1 ? ? C4 B G 1 ? ? 108.85 106.40 2.45 0.40 N 37 1 C6 B C 3 ? ? N1 B C 3 ? ? C2 B C 3 ? ? 117.36 120.30 -2.94 0.40 N 38 1 N3 B C 3 ? ? C4 B C 3 ? ? C5 B C 3 ? ? 118.37 121.90 -3.53 0.40 N 39 1 OP1 B G 4 ? ? P B G 4 ? ? OP2 B G 4 ? ? 109.92 119.60 -9.68 1.50 N 40 1 C4 B G 4 ? ? C5 B G 4 ? ? N7 B G 4 ? ? 106.94 110.80 -3.86 0.40 N 41 1 C5 B G 4 ? ? N7 B G 4 ? ? C8 B G 4 ? ? 107.89 104.30 3.59 0.50 N 42 1 N9 B G 4 ? ? C4 B G 4 ? ? C5 B G 4 ? ? 108.57 105.40 3.17 0.40 N 43 1 OP1 B A 5 ? ? P B A 5 ? ? OP2 B A 5 ? ? 129.14 119.60 9.54 1.50 N 44 1 "O5'" B A 5 ? ? P B A 5 ? ? OP1 B A 5 ? ? 99.42 105.70 -6.28 0.90 N 45 1 C2 B A 5 ? ? N3 B A 5 ? ? C4 B A 5 ? ? 114.26 110.60 3.66 0.50 N 46 1 C5 B A 5 ? ? C6 B A 5 ? ? N1 B A 5 ? ? 120.83 117.70 3.13 0.50 N 47 1 C6 B C 21 ? ? N1 B C 21 ? ? C2 B C 21 ? ? 122.83 120.30 2.53 0.40 N 48 1 C5 B C 21 ? ? C6 B C 21 ? ? N1 B C 21 ? ? 117.62 121.00 -3.38 0.50 N 49 1 C2 B C 22 ? ? N3 B C 22 ? ? C4 B C 22 ? ? 115.82 119.90 -4.08 0.50 N 50 1 N3 B C 22 ? ? C4 B C 22 ? ? C5 B C 22 ? ? 124.85 121.90 2.95 0.40 N 51 1 N3 B C 22 ? ? C4 B C 22 ? ? N4 B C 22 ? ? 113.27 118.00 -4.73 0.70 N 52 1 C5 B U 23 ? ? C4 B U 23 ? ? O4 B U 23 ? ? 130.93 125.90 5.03 0.60 N 53 1 C6 B U 24 ? ? N1 B U 24 ? ? C2 B U 24 ? ? 115.16 121.00 -5.84 0.60 N 54 1 C5 B U 24 ? ? C6 B U 24 ? ? N1 B U 24 ? ? 126.41 122.70 3.71 0.50 N 55 1 C5 B G 26 ? ? C6 B G 26 ? ? N1 B G 26 ? ? 107.74 111.50 -3.76 0.50 N 56 1 N1 B G 26 ? ? C6 B G 26 ? ? O6 B G 26 ? ? 124.52 119.90 4.62 0.60 N 57 1 C4 B G 29 ? ? C5 B G 29 ? ? N7 B G 29 ? ? 108.03 110.80 -2.77 0.40 N 58 1 C5 B G 29 ? ? C6 B G 29 ? ? O6 B G 29 ? ? 132.87 128.60 4.27 0.60 N 59 1 C6 B C 30 ? ? N1 B C 30 ? ? C2 B C 30 ? ? 124.31 120.30 4.01 0.40 N 60 1 C5 B C 30 ? ? C6 B C 30 ? ? N1 B C 30 ? ? 117.90 121.00 -3.10 0.50 N 61 1 N1 B C 30 ? ? C2 B C 30 ? ? O2 B C 30 ? ? 126.91 118.90 8.01 0.60 N 62 1 N3 B C 30 ? ? C2 B C 30 ? ? O2 B C 30 ? ? 115.45 121.90 -6.45 0.70 N 63 1 N3 B C 30 ? ? C4 B C 30 ? ? N4 B C 30 ? ? 113.77 118.00 -4.23 0.70 N 64 1 OP1 B G 31 ? ? P B G 31 ? ? OP2 B G 31 ? ? 130.30 119.60 10.70 1.50 N 65 1 C4 B G 31 ? ? C5 B G 31 ? ? N7 B G 31 ? ? 115.21 110.80 4.41 0.40 N 66 1 C5 B G 31 ? ? N7 B G 31 ? ? C8 B G 31 ? ? 100.32 104.30 -3.98 0.50 N 67 1 C8 B G 31 ? ? N9 B G 31 ? ? C4 B G 31 ? ? 109.85 106.40 3.45 0.40 N 68 1 N9 B G 31 ? ? C4 B G 31 ? ? C5 B G 31 ? ? 101.06 105.40 -4.34 0.40 N 69 1 "O5'" B C 32 ? ? P B C 32 ? ? OP2 B C 32 ? ? 97.83 105.70 -7.87 0.90 N 70 1 C4 B C 33 ? ? C5 B C 33 ? ? C6 B C 33 ? ? 114.39 117.40 -3.01 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 QEU C10 C Y N 111 QEU C17 C N N 112 QEU C20 C N N 113 QEU C21 C N N 114 QEU C22 C N N 115 QEU C24 C N N 116 QEU C01 C N N 117 QEU C03 C Y N 118 QEU C04 C Y N 119 QEU C06 C N N 120 QEU C07 C Y N 121 QEU C08 C Y N 122 QEU C09 C Y N 123 QEU C12 C Y N 124 QEU C14 C Y N 125 QEU C16 C N N 126 QEU C19 C N N 127 QEU C25 C N N 128 QEU N11 N Y N 129 QEU N13 N Y N 130 QEU N15 N N N 131 QEU N18 N N N 132 QEU O02 O N N 133 QEU O05 O N N 134 QEU O23 O N N 135 QEU H101 H N N 136 QEU H171 H N N 137 QEU H172 H N N 138 QEU H201 H N N 139 QEU H202 H N N 140 QEU H212 H N N 141 QEU H211 H N N 142 QEU H221 H N N 143 QEU H222 H N N 144 QEU H241 H N N 145 QEU H242 H N N 146 QEU H011 H N N 147 QEU H013 H N N 148 QEU H012 H N N 149 QEU H063 H N N 150 QEU H061 H N N 151 QEU H062 H N N 152 QEU H071 H N N 153 QEU H121 H N N 154 QEU H161 H N N 155 QEU H162 H N N 156 QEU H192 H N N 157 QEU H191 H N N 158 QEU H251 H N N 159 QEU H252 H N N 160 QEU H231 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 QEU C25 C24 sing N N 116 QEU C25 N15 sing N N 117 QEU C24 N18 sing N N 118 QEU O05 C06 sing N N 119 QEU O05 C04 sing N N 120 QEU C04 C07 doub Y N 121 QEU C04 C03 sing Y N 122 QEU O02 C03 sing N N 123 QEU O02 C01 sing N N 124 QEU C07 C08 sing Y N 125 QEU C03 C10 doub Y N 126 QEU N15 C14 sing N N 127 QEU N15 C16 sing N N 128 QEU C08 C09 doub Y N 129 QEU C08 C14 sing Y N 130 QEU C10 C09 sing Y N 131 QEU C09 N11 sing Y N 132 QEU C14 N13 doub Y N 133 QEU N13 C12 sing Y N 134 QEU N11 C12 doub Y N 135 QEU N18 C19 sing N N 136 QEU N18 C17 sing N N 137 QEU C16 C17 sing N N 138 QEU C20 C19 sing N N 139 QEU C20 C21 sing N N 140 QEU O23 C22 sing N N 141 QEU C21 C22 sing N N 142 QEU C10 H101 sing N N 143 QEU C17 H171 sing N N 144 QEU C17 H172 sing N N 145 QEU C20 H201 sing N N 146 QEU C20 H202 sing N N 147 QEU C21 H212 sing N N 148 QEU C21 H211 sing N N 149 QEU C22 H221 sing N N 150 QEU C22 H222 sing N N 151 QEU C24 H241 sing N N 152 QEU C24 H242 sing N N 153 QEU C01 H011 sing N N 154 QEU C01 H013 sing N N 155 QEU C01 H012 sing N N 156 QEU C06 H063 sing N N 157 QEU C06 H061 sing N N 158 QEU C06 H062 sing N N 159 QEU C07 H071 sing N N 160 QEU C12 H121 sing N N 161 QEU C16 H161 sing N N 162 QEU C16 H162 sing N N 163 QEU C19 H192 sing N N 164 QEU C19 H191 sing N N 165 QEU C25 H251 sing N N 166 QEU C25 H252 sing N N 167 QEU O23 H231 sing N N 168 U OP3 P sing N N 169 U OP3 HOP3 sing N N 170 U P OP1 doub N N 171 U P OP2 sing N N 172 U P "O5'" sing N N 173 U OP2 HOP2 sing N N 174 U "O5'" "C5'" sing N N 175 U "C5'" "C4'" sing N N 176 U "C5'" "H5'" sing N N 177 U "C5'" "H5''" sing N N 178 U "C4'" "O4'" sing N N 179 U "C4'" "C3'" sing N N 180 U "C4'" "H4'" sing N N 181 U "O4'" "C1'" sing N N 182 U "C3'" "O3'" sing N N 183 U "C3'" "C2'" sing N N 184 U "C3'" "H3'" sing N N 185 U "O3'" "HO3'" sing N N 186 U "C2'" "O2'" sing N N 187 U "C2'" "C1'" sing N N 188 U "C2'" "H2'" sing N N 189 U "O2'" "HO2'" sing N N 190 U "C1'" N1 sing N N 191 U "C1'" "H1'" sing N N 192 U N1 C2 sing N N 193 U N1 C6 sing N N 194 U C2 O2 doub N N 195 U C2 N3 sing N N 196 U N3 C4 sing N N 197 U N3 H3 sing N N 198 U C4 O4 doub N N 199 U C4 C5 sing N N 200 U C5 C6 doub N N 201 U C5 H5 sing N N 202 U C6 H6 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8D5O 'double helix' 8D5O 'a-form double helix' 8D5O tetraloop 8D5O 'bulge loop' 8D5O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 33 1_555 -0.592 -0.185 -0.007 -7.763 -11.063 0.745 1 A_G1:C33_A A 1 ? A 33 ? 19 1 1 A G 2 1_555 A C 32 1_555 -0.221 -0.102 0.004 -4.574 -7.525 0.967 2 A_G2:C32_A A 2 ? A 32 ? 19 1 1 A C 3 1_555 A G 31 1_555 0.736 -0.204 0.314 -6.063 -11.543 3.115 3 A_C3:G31_A A 3 ? A 31 ? 19 1 1 A G 4 1_555 A C 30 1_555 -0.036 -0.015 -0.085 -9.429 -13.107 2.892 4 A_G4:C30_A A 4 ? A 30 ? 19 1 1 A A 5 1_555 A G 29 1_555 0.021 1.193 -0.235 -4.663 -12.395 -14.463 5 A_A5:G29_A A 5 ? A 29 ? 8 1 1 A U 23 1_555 A A 28 1_555 -0.765 3.466 0.288 -1.039 0.701 -70.336 6 A_U23:A28_A A 23 ? A 28 ? 23 3 1 A C 8 1_555 A G 26 1_555 0.010 -0.294 0.271 -0.318 -1.937 -0.174 7 A_C8:G26_A A 8 ? A 26 ? 19 1 1 A C 9 1_555 A G 25 1_555 0.457 -0.366 -0.383 26.689 -17.660 -6.051 8 A_C9:G25_A A 9 ? A 25 ? 19 1 1 A A 10 1_555 A C 21 1_555 -4.179 -0.988 0.466 12.217 -3.585 -15.435 9 A_A10:C21_A A 10 ? A 21 ? ? 1 1 A G 11 1_555 A C 20 1_555 -0.488 -0.327 0.122 12.609 -18.690 3.014 10 A_G11:C20_A A 11 ? A 20 ? 19 1 1 A C 12 1_555 A G 19 1_555 -0.031 -0.161 -0.101 4.777 -22.447 7.323 11 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 0.149 -0.422 0.476 -3.409 4.154 -2.523 12 A_C13:G18_A A 13 ? A 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.577 -5.133 0.860 23.709 12.853 -14.438 13 A_G14:A17_A A 14 ? A 17 ? 11 10 1 B G 1 1_555 B C 33 1_555 -0.231 -0.171 0.023 -5.344 -6.871 -4.558 14 B_G1:C33_B B 1 ? B 33 ? 19 1 1 B G 2 1_555 B C 32 1_555 0.152 -0.217 -0.248 -9.153 -6.760 3.129 15 B_G2:C32_B B 2 ? B 32 ? 19 1 1 B C 3 1_555 B G 31 1_555 0.311 -0.319 0.233 0.280 -12.573 -1.381 16 B_C3:G31_B B 3 ? B 31 ? 19 1 1 B G 4 1_555 B C 30 1_555 -0.001 0.122 0.263 -8.357 -15.137 1.196 17 B_G4:C30_B B 4 ? B 30 ? 19 1 1 B A 5 1_555 B G 29 1_555 -0.150 1.352 -0.171 -3.682 -18.530 -12.698 18 B_A5:G29_B B 5 ? B 29 ? 8 1 1 B U 23 1_555 B A 28 1_555 -0.460 3.705 -0.309 0.256 -4.625 -67.242 19 B_U23:A28_B B 23 ? B 28 ? 23 3 1 B C 8 1_555 B G 26 1_555 -0.027 -0.167 0.051 -0.303 -2.288 1.265 20 B_C8:G26_B B 8 ? B 26 ? 19 1 1 B C 9 1_555 B G 25 1_555 0.345 -0.213 -0.151 14.062 -16.614 1.663 21 B_C9:G25_B B 9 ? B 25 ? 19 1 1 B A 10 1_555 B C 21 1_555 -4.556 -1.075 0.862 12.093 3.494 -11.299 22 B_A10:C21_B B 10 ? B 21 ? ? 1 1 B G 11 1_555 B C 20 1_555 0.016 -0.205 0.170 11.842 -13.933 1.685 23 B_G11:C20_B B 11 ? B 20 ? 19 1 1 B C 12 1_555 B G 19 1_555 0.048 -0.019 -0.176 5.679 -22.604 7.333 24 B_C12:G19_B B 12 ? B 19 ? 19 1 1 B C 13 1_555 B G 18 1_555 0.167 -0.163 -0.077 1.141 5.804 1.914 25 B_C13:G18_B B 13 ? B 18 ? 19 1 1 B G 14 1_555 B A 17 1_555 6.915 -5.308 0.914 27.928 10.931 -21.285 26 B_G14:A17_B B 14 ? B 17 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 33 1_555 A G 2 1_555 A C 32 1_555 -0.675 -1.553 3.047 -4.609 5.314 35.028 -3.233 0.494 2.852 8.720 7.563 35.706 1 AA_G1G2:C32C33_AA A 1 ? A 33 ? A 2 ? A 32 ? 1 A G 2 1_555 A C 32 1_555 A C 3 1_555 A G 31 1_555 0.319 -1.229 3.384 -0.548 2.967 36.847 -2.346 -0.579 3.274 4.684 0.864 36.966 2 AA_G2C3:G31C32_AA A 2 ? A 32 ? A 3 ? A 31 ? 1 A C 3 1_555 A G 31 1_555 A G 4 1_555 A C 30 1_555 0.646 -1.719 3.107 6.196 13.522 30.883 -4.772 -0.251 2.265 23.743 -10.879 34.199 3 AA_C3G4:C30G31_AA A 3 ? A 31 ? A 4 ? A 30 ? 1 A G 4 1_555 A C 30 1_555 A A 5 1_555 A G 29 1_555 -1.090 -1.324 3.095 0.363 7.638 31.567 -3.573 2.007 2.697 13.787 -0.655 32.457 4 AA_G4A5:G29C30_AA A 4 ? A 30 ? A 5 ? A 29 ? 1 A A 5 1_555 A G 29 1_555 A U 23 1_555 A A 28 1_555 0.678 -3.998 2.338 -116.879 -129.376 147.197 -1.717 -0.594 2.952 -64.773 58.516 178.406 5 AA_A5U23:A28G29_AA A 5 ? A 29 ? A 23 ? A 28 ? 1 A U 23 1_555 A A 28 1_555 A C 8 1_555 A G 26 1_555 -4.099 5.919 0.324 -160.844 -46.531 -89.297 -3.031 -1.840 -1.397 23.782 -82.207 -171.073 6 AA_U23C8:G26A28_AA A 23 ? A 28 ? A 8 ? A 26 ? 1 A C 8 1_555 A G 26 1_555 A C 9 1_555 A G 25 1_555 0.142 -0.947 2.580 3.690 3.482 36.327 -1.876 0.167 2.484 5.551 -5.883 36.668 7 AA_C8C9:G25G26_AA A 8 ? A 26 ? A 9 ? A 25 ? 1 A C 9 1_555 A G 25 1_555 A A 10 1_555 A C 21 1_555 3.070 -1.539 3.037 -3.592 11.316 40.458 -3.114 -4.582 2.276 15.953 5.064 42.094 8 AA_C9A10:C21G25_AA A 9 ? A 25 ? A 10 ? A 21 ? 1 A A 10 1_555 A C 21 1_555 A G 11 1_555 A C 20 1_555 0.448 -1.108 3.266 -5.270 9.893 47.773 -2.055 -0.923 2.933 12.024 6.405 48.995 9 AA_A10G11:C20C21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A G 11 1_555 A C 20 1_555 A C 12 1_555 A G 19 1_555 0.078 -1.177 3.451 -1.485 7.715 38.432 -2.697 -0.298 3.160 11.573 2.227 39.197 10 AA_G11C12:G19C20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A C 13 1_555 A G 18 1_555 -0.653 -1.728 3.619 -5.770 5.296 33.004 -3.886 0.116 3.372 9.162 9.982 33.896 11 AA_C12C13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -1.439 -1.435 2.358 -1.685 7.216 49.956 -2.041 1.604 2.189 8.490 1.983 50.468 12 AA_C13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? 1 B G 1 1_555 B C 33 1_555 B G 2 1_555 B C 32 1_555 -0.111 -1.827 3.287 0.260 6.292 34.459 -3.943 0.222 2.917 10.511 -0.434 35.013 13 BB_G1G2:C32C33_BB B 1 ? B 33 ? B 2 ? B 32 ? 1 B G 2 1_555 B C 32 1_555 B C 3 1_555 B G 31 1_555 -0.272 -1.354 3.039 -2.639 7.912 33.013 -3.432 0.092 2.666 13.654 4.554 34.022 14 BB_G2C3:G31C32_BB B 2 ? B 32 ? B 3 ? B 31 ? 1 B C 3 1_555 B G 31 1_555 B G 4 1_555 B C 30 1_555 0.792 -1.670 3.198 4.074 14.497 32.271 -4.623 -0.769 2.338 24.487 -6.881 35.527 15 BB_C3G4:C30G31_BB B 3 ? B 31 ? B 4 ? B 30 ? 1 B G 4 1_555 B C 30 1_555 B A 5 1_555 B G 29 1_555 -1.150 -1.430 3.082 2.898 4.404 31.304 -3.341 2.581 2.745 8.090 -5.323 31.734 16 BB_G4A5:G29C30_BB B 4 ? B 30 ? B 5 ? B 29 ? 1 B A 5 1_555 B G 29 1_555 B U 23 1_555 B A 28 1_555 1.214 -3.807 3.019 -112.440 -127.923 167.945 -1.781 -0.715 3.218 -63.982 56.238 178.984 17 BB_A5U23:A28G29_BB B 5 ? B 29 ? B 23 ? B 28 ? 1 B U 23 1_555 B A 28 1_555 B C 8 1_555 B G 26 1_555 -3.485 5.651 1.587 -168.043 -49.115 -18.380 -2.816 -1.786 -1.484 25.138 -86.008 -175.136 18 BB_U23C8:G26A28_BB B 23 ? B 28 ? B 8 ? B 26 ? 1 B C 8 1_555 B G 26 1_555 B C 9 1_555 B G 25 1_555 0.401 -0.837 2.828 1.826 8.262 36.755 -2.196 -0.422 2.603 12.893 -2.849 37.683 19 BB_C8C9:G25G26_BB B 8 ? B 26 ? B 9 ? B 25 ? 1 B C 9 1_555 B G 25 1_555 B A 10 1_555 B C 21 1_555 3.044 -1.431 2.667 -6.242 5.595 37.514 -2.671 -5.181 1.930 8.569 9.560 38.406 20 BB_C9A10:C21G25_BB B 9 ? B 25 ? B 10 ? B 21 ? 1 B A 10 1_555 B C 21 1_555 B G 11 1_555 B C 20 1_555 0.447 -1.239 3.372 -1.286 6.538 50.385 -1.906 -0.612 3.187 7.641 1.503 50.795 21 BB_A10G11:C20C21_BB B 10 ? B 21 ? B 11 ? B 20 ? 1 B G 11 1_555 B C 20 1_555 B C 12 1_555 B G 19 1_555 -0.065 -1.343 3.331 2.074 7.170 37.931 -2.897 0.349 3.029 10.902 -3.153 38.632 22 BB_G11C12:G19C20_BB B 11 ? B 20 ? B 12 ? B 19 ? 1 B C 12 1_555 B G 19 1_555 B C 13 1_555 B G 18 1_555 -0.215 -1.635 3.407 -2.679 10.738 31.511 -4.573 -0.055 2.727 19.053 4.753 33.352 23 BB_C12C13:G18G19_BB B 12 ? B 19 ? B 13 ? B 18 ? 1 B C 13 1_555 B G 18 1_555 B G 14 1_555 B A 17 1_555 -1.989 -1.228 2.390 -2.173 9.126 53.205 -1.756 2.096 2.241 10.101 2.405 53.967 24 BB_C13G14:A17G18_BB B 13 ? B 18 ? B 14 ? B 17 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '4-[4-(6,7-dimethoxyquinazolin-4-yl)piperazin-1-yl]butan-1-ol' _pdbx_entity_nonpoly.comp_id QEU # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O15 _pdbx_initial_refinement_model.details 'PDB entry 1O15' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'surface plasmon resonance' _pdbx_struct_assembly_auth_evidence.details ? #