HEADER IMMUNE SYSTEM 05-JUN-22 8D5Q TITLE TCR TG6 IN COMPLEX WITH LD-HF10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TCR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TCR-BETA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, L-D ALPHA CHAIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DENSE GRANULE PROTEIN 6, HF10 PEPTIDE; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 VARIANT: TRANSGENIC MOUSE LINE TG6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 VARIANT: TRANSGENIC MOUSE LINE TG6; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 GENE: H2-L; SOURCE 20 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 21 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 26 ORGANISM_TAXID: 5811 KEYWDS MHCI, CD8 T CELL, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,S.DAI REVDAT 2 18-OCT-23 8D5Q 1 REMARK REVDAT 1 14-SEP-22 8D5Q 0 JRNL AUTH Y.WANG,A.TSITSIKLIS,S.DEVOE,W.GAO,H.H.CHU,Y.ZHANG,W.LI, JRNL AUTH 2 W.K.WONG,C.M.DEANE,D.NEAU,J.E.SLANSKY,P.G.THOMAS,E.A.ROBEY, JRNL AUTH 3 S.DAI JRNL TITL PEPTIDE CENTRIC V BETA SPECIFIC GERMLINE CONTACTS SHAPE A JRNL TITL 2 SPECIALIST T CELL RESPONSE. JRNL REF FRONT IMMUNOL V. 13 47092 2022 JRNL REFN ESSN 1664-3224 JRNL PMID 35967379 JRNL DOI 10.3389/FIMMU.2022.847092 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.119 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25100 REMARK 3 B22 (A**2) : -0.25100 REMARK 3 B33 (A**2) : 0.50100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.397 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5283 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4553 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7181 ; 1.892 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10582 ; 1.372 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 633 ; 8.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;35.114 ;22.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;19.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6021 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1211 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1009 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 47 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2376 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 4.167 ; 5.765 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2540 ; 4.166 ; 5.765 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3171 ; 6.184 ; 8.632 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3172 ; 6.183 ; 8.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2742 ; 4.996 ; 6.224 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2740 ; 4.854 ; 6.219 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4010 ; 7.360 ; 9.131 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4011 ; 7.359 ; 9.134 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3932-103.3432 5.5415 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0847 REMARK 3 T33: 0.1509 T12: 0.0028 REMARK 3 T13: -0.0781 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0189 L22: 0.6865 REMARK 3 L33: 1.1210 L12: -0.0845 REMARK 3 L13: 0.7512 L23: -0.6790 REMARK 3 S TENSOR REMARK 3 S11: 0.1985 S12: -0.0539 S13: -0.2344 REMARK 3 S21: -0.0315 S22: -0.1539 S23: -0.1066 REMARK 3 S31: 0.1542 S32: 0.0805 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1728 -88.0860 15.2565 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.1876 REMARK 3 T33: 0.0319 T12: -0.0292 REMARK 3 T13: 0.0013 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 1.7483 L22: 0.7174 REMARK 3 L33: 0.2397 L12: -0.6938 REMARK 3 L13: 0.6050 L23: -0.3493 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.2015 S13: 0.0104 REMARK 3 S21: 0.0157 S22: -0.0393 S23: 0.0163 REMARK 3 S31: 0.0041 S32: -0.0192 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 176 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2427 -68.7207 -17.4619 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: 0.0252 REMARK 3 T33: 0.0723 T12: -0.0171 REMARK 3 T13: 0.0642 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1624 L22: 0.7912 REMARK 3 L33: 0.3564 L12: -0.4501 REMARK 3 L13: 0.1453 L23: 0.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: 0.0448 S13: 0.1106 REMARK 3 S21: -0.0687 S22: -0.0136 S23: -0.0945 REMARK 3 S31: -0.0533 S32: -0.0273 S33: -0.0908 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 10 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3186 -71.9171 -12.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.0513 REMARK 3 T33: 0.1051 T12: -0.0550 REMARK 3 T13: -0.0005 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.7884 L22: 0.1961 REMARK 3 L33: 1.3231 L12: -0.4050 REMARK 3 L13: 0.7996 L23: 0.3325 REMARK 3 S TENSOR REMARK 3 S11: 0.1907 S12: -0.1532 S13: 0.1586 REMARK 3 S21: -0.0264 S22: -0.0231 S23: -0.0921 REMARK 3 S31: -0.0083 S32: -0.1319 S33: -0.1675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8D5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LD9, 3TO4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11 % W/V PEG 8000, 0.1 M MES 6.0, 0.24 REMARK 280 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.99100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.49550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.48650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 205 REMARK 465 GLU A 206 REMARK 465 SER A 207 REMARK 465 SER A 208 REMARK 465 MET C 0 REMARK 465 ALA C 177 REMARK 465 THR C 178 REMARK 465 LEU C 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 CD GLU A 7 OE1 0.068 REMARK 500 GLU C 114 CD GLU C 114 OE1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 6 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG C 157 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -0.42 78.95 REMARK 500 LEU A 46 -65.66 -109.03 REMARK 500 THR A 70 63.24 34.03 REMARK 500 PHE A 72 57.84 -157.56 REMARK 500 ALA A 85 177.24 172.23 REMARK 500 ASP A 120 57.65 -165.13 REMARK 500 LYS A 130 44.63 -93.16 REMARK 500 SER A 131 -130.03 35.67 REMARK 500 SER A 132 164.49 67.38 REMARK 500 ASP A 141 8.86 81.47 REMARK 500 GLN A 150 -173.33 -66.63 REMARK 500 LYS A 161 164.37 -44.41 REMARK 500 ASP A 170 66.13 19.77 REMARK 500 SER A 183 -35.42 69.46 REMARK 500 ALA A 190 -21.40 -155.31 REMARK 500 ASN A 193 15.77 -65.10 REMARK 500 ARG B 10 131.27 -175.57 REMARK 500 TYR B 29 62.72 -117.90 REMARK 500 TYR B 99 -55.80 -139.70 REMARK 500 PRO B 151 -168.16 -79.48 REMARK 500 HIS B 166 -46.05 -136.70 REMARK 500 ALA B 181 -96.26 -62.70 REMARK 500 LEU B 182 101.61 -4.36 REMARK 500 ASP B 225 -69.73 79.60 REMARK 500 ARG C 15 -77.09 -62.35 REMARK 500 GLN C 54 47.03 -141.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6X2T RELATED DB: PDB REMARK 900 RELATED ID: 6X30 RELATED DB: PDB DBREF 8D5Q A 0 208 PDB 8D5Q 8D5Q 0 208 DBREF 8D5Q B 0 243 PDB 8D5Q 8D5Q 0 243 DBREF 8D5Q C 1 179 UNP P01897 HA1L_MOUSE 25 203 DBREF 8D5Q E 1 10 PDB 8D5Q 8D5Q 1 10 SEQADV 8D5Q MET C 0 UNP P01897 INITIATING METHIONINE SEQADV 8D5Q TYR C 8 UNP P01897 PHE 32 CONFLICT SEQADV 8D5Q THR C 12 UNP P01897 VAL 36 CONFLICT SEQADV 8D5Q ARG C 15 UNP P01897 PRO 39 CONFLICT SEQADV 8D5Q THR C 23 UNP P01897 ILE 47 CONFLICT SEQADV 8D5Q ASP C 30 UNP P01897 ASN 54 CONFLICT SEQADV 8D5Q VAL C 49 UNP P01897 ALA 73 CONFLICT SEQADV 8D5Q VAL C 66 UNP P01897 ILE 90 CONFLICT SEQADV 8D5Q ARG C 131 UNP P01897 LYS 155 CONFLICT SEQRES 1 A 209 MET ASP SER VAL THR GLN THR GLU GLY GLN VAL ALA LEU SEQRES 2 A 209 SER GLU GLU ASP PHE LEU THR ILE HIS CYS ASN TYR SER SEQRES 3 A 209 ALA SER GLY TYR PRO ALA LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 209 PRO GLY GLU GLY PRO GLN PHE LEU PHE ARG ALA SER ARG SEQRES 5 A 209 ASP LYS GLU LYS GLY SER SER ARG GLY PHE GLU ALA THR SEQRES 6 A 209 TYR ASN LYS GLU THR THR SER PHE HIS LEU GLN LYS ALA SEQRES 7 A 209 SER VAL GLN GLU SER ASP SER ALA VAL TYR TYR CYS ALA SEQRES 8 A 209 LEU GLY ASP PRO THR GLY ALA ASN THR GLY LYS LEU THR SEQRES 9 A 209 PHE GLY HIS GLY THR ILE LEU ARG VAL HIS PRO ASN ILE SEQRES 10 A 209 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 209 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 209 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 209 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 209 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 209 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 209 ILE ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SEQRES 17 A 209 SER SEQRES 1 B 244 MET THR LEU LEU GLU GLN ASN PRO ARG TRP ARG LEU VAL SEQRES 2 B 244 PRO ARG GLY GLN ALA VAL ASN LEU ARG CYS ILE LEU LYS SEQRES 3 B 244 ASN SER GLN TYR PRO TRP MET SER TRP TYR GLN GLN ASP SEQRES 4 B 244 LEU GLN LYS GLN LEU GLN TRP LEU PHE THR LEU ARG SER SEQRES 5 B 244 PRO GLY ASP LYS GLU VAL LYS SER LEU PRO GLY ALA ASP SEQRES 6 B 244 TYR LEU ALA THR ARG VAL THR ASP THR GLU LEU ARG LEU SEQRES 7 B 244 GLN VAL ALA ASN MET SER GLN GLY ARG THR LEU TYR CYS SEQRES 8 B 244 THR CYS SER ALA GLY ARG GLY GLY TYR ALA GLU GLN PHE SEQRES 9 B 244 PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU SEQRES 10 B 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 B 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 B 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 B 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 B 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 B 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 B 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 B 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 B 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 B 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 C 180 MET GLY PRO HIS SER MET ARG TYR TYR GLU THR ALA THR SEQRES 2 C 180 SER ARG ARG GLY LEU GLY GLU PRO ARG TYR THR SER VAL SEQRES 3 C 180 GLY TYR VAL ASP ASP LYS GLU PHE VAL ARG PHE ASP SER SEQRES 4 C 180 ASP ALA GLU ASN PRO ARG TYR GLU PRO GLN VAL PRO TRP SEQRES 5 C 180 MET GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG ILE THR SEQRES 6 C 180 GLN VAL ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL ASN SEQRES 7 C 180 LEU ARG THR LEU LEU GLY TYR TYR ASN GLN SER ALA GLY SEQRES 8 C 180 GLY THR HIS THR LEU GLN TRP MET TYR GLY CYS ASP VAL SEQRES 9 C 180 GLY SER ASP GLY ARG LEU LEU ARG GLY TYR GLU GLN PHE SEQRES 10 C 180 ALA TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 C 180 LEU ARG THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 C 180 THR ARG ARG LYS TRP GLU GLN ALA GLY ALA ALA GLU TYR SEQRES 13 C 180 TYR ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU SEQRES 14 C 180 HIS ARG TYR LEU LYS ASN GLY ASN ALA THR LEU SEQRES 1 E 10 HIS PRO GLY SER VAL ASN GLU PHE ASP PHE HET SO4 B 301 5 HET MES B 302 12 HET SO4 C 201 5 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 MES C6 H13 N O4 S FORMUL 8 HOH *208(H2 O) HELIX 1 AA1 GLN A 80 SER A 84 5 5 HELIX 2 AA2 ARG A 167 ASP A 170 5 4 HELIX 3 AA3 ASP B 115 VAL B 119 5 5 HELIX 4 AA4 SER B 130 GLN B 138 1 9 HELIX 5 AA5 ALA B 197 ASN B 202 1 6 HELIX 6 AA6 VAL C 49 GLU C 53 5 5 HELIX 7 AA7 GLY C 56 TYR C 85 1 30 HELIX 8 AA8 ASP C 137 GLY C 151 1 15 HELIX 9 AA9 GLY C 151 GLY C 162 1 12 HELIX 10 AB1 GLY C 162 GLY C 175 1 14 SHEET 1 AA1 2 SER A 2 THR A 4 0 SHEET 2 AA1 2 ASN A 23 SER A 25 -1 O ASN A 23 N THR A 4 SHEET 1 AA2 5 GLN A 9 SER A 13 0 SHEET 2 AA2 5 THR A 108 HIS A 113 1 O ILE A 109 N VAL A 10 SHEET 3 AA2 5 ALA A 85 LEU A 91 -1 N ALA A 85 O LEU A 110 SHEET 4 AA2 5 LEU A 32 GLN A 37 -1 N TYR A 35 O TYR A 88 SHEET 5 AA2 5 GLN A 44 ALA A 49 -1 O ALA A 49 N LEU A 32 SHEET 1 AA3 4 GLN A 9 SER A 13 0 SHEET 2 AA3 4 THR A 108 HIS A 113 1 O ILE A 109 N VAL A 10 SHEET 3 AA3 4 ALA A 85 LEU A 91 -1 N ALA A 85 O LEU A 110 SHEET 4 AA3 4 THR A 103 PHE A 104 -1 O THR A 103 N LEU A 91 SHEET 1 AA4 2 LEU A 18 ILE A 20 0 SHEET 2 AA4 2 LEU A 74 LYS A 76 -1 O LEU A 74 N ILE A 20 SHEET 1 AA5 2 LYS A 55 SER A 58 0 SHEET 2 AA5 2 PHE A 61 THR A 64 -1 O ALA A 63 N GLY A 56 SHEET 1 AA6 4 ALA A 122 ARG A 127 0 SHEET 2 AA6 4 SER A 135 THR A 140 -1 O LEU A 138 N TYR A 124 SHEET 3 AA6 4 PHE A 171 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AA6 4 VAL A 156 ILE A 158 -1 N TYR A 157 O TRP A 179 SHEET 1 AA7 4 ALA A 122 ARG A 127 0 SHEET 2 AA7 4 SER A 135 THR A 140 -1 O LEU A 138 N TYR A 124 SHEET 3 AA7 4 PHE A 171 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AA7 4 VAL A 163 MET A 166 -1 N MET A 166 O PHE A 171 SHEET 1 AA8 5 LEU B 3 ASN B 6 0 SHEET 2 AA8 5 VAL B 18 LEU B 24 -1 O ARG B 21 N ASN B 6 SHEET 3 AA8 5 GLU B 74 ALA B 80 -1 O LEU B 77 N LEU B 20 SHEET 4 AA8 5 ALA B 63 THR B 71 -1 N THR B 68 O ARG B 76 SHEET 5 AA8 5 LYS B 55 LEU B 60 -1 N GLU B 56 O ALA B 67 SHEET 1 AA9 5 TRP B 9 PRO B 13 0 SHEET 2 AA9 5 THR B 108 LEU B 113 1 O THR B 111 N VAL B 12 SHEET 3 AA9 5 ARG B 86 SER B 93 -1 N LEU B 88 O THR B 108 SHEET 4 AA9 5 TRP B 31 ASP B 38 -1 N GLN B 37 O THR B 87 SHEET 5 AA9 5 LEU B 43 LEU B 49 -1 O LEU B 46 N TRP B 34 SHEET 1 AB1 4 TRP B 9 PRO B 13 0 SHEET 2 AB1 4 THR B 108 LEU B 113 1 O THR B 111 N VAL B 12 SHEET 3 AB1 4 ARG B 86 SER B 93 -1 N LEU B 88 O THR B 108 SHEET 4 AB1 4 PHE B 103 PHE B 104 -1 O PHE B 103 N CYS B 92 SHEET 1 AB2 4 GLU B 123 PHE B 127 0 SHEET 2 AB2 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AB2 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB2 4 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 AB3 4 GLU B 123 PHE B 127 0 SHEET 2 AB3 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AB3 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB3 4 LEU B 176 LYS B 177 -1 N LEU B 176 O ALA B 188 SHEET 1 AB4 4 LYS B 163 VAL B 165 0 SHEET 2 AB4 4 VAL B 154 VAL B 160 -1 N VAL B 160 O LYS B 163 SHEET 3 AB4 4 HIS B 206 PHE B 213 -1 O GLN B 210 N SER B 157 SHEET 4 AB4 4 GLN B 232 TRP B 239 -1 O ALA B 236 N CYS B 209 SHEET 1 AB5 8 GLU C 46 PRO C 47 0 SHEET 2 AB5 8 LYS C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 AB5 8 ARG C 21 VAL C 28 -1 N GLY C 26 O PHE C 33 SHEET 4 AB5 8 HIS C 3 SER C 13 -1 N ARG C 6 O TYR C 27 SHEET 5 AB5 8 HIS C 93 VAL C 103 -1 O TYR C 99 N TYR C 7 SHEET 6 AB5 8 LEU C 109 TYR C 118 -1 O LEU C 110 N ASP C 102 SHEET 7 AB5 8 CYS C 121 LEU C 126 -1 O TYR C 123 N PHE C 116 SHEET 8 AB5 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SSBOND 1 CYS A 22 CYS A 89 1555 1555 2.05 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.09 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.02 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.06 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.02 SSBOND 6 CYS C 101 CYS C 164 1555 1555 2.13 CISPEP 1 ASN B 6 PRO B 7 0 -8.68 CISPEP 2 TYR B 150 PRO B 151 0 0.18 SITE 1 AC1 3 VAL B 165 HIS B 166 SER B 167 SITE 1 AC2 5 ASN B 6 PRO B 7 ARG B 8 TRP B 9 SITE 2 AC2 5 ARG B 10 SITE 1 AC3 5 ASN C 127 GLU C 128 ASP C 129 HOH C 327 SITE 2 AC3 5 HOH C 344 CRYST1 89.963 89.963 105.982 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009436 0.00000