data_8D78 # _entry.id 8D78 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8D78 pdb_00008d78 10.2210/pdb8d78/pdb WWPDB D_1000266079 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8D78 _pdbx_database_status.recvd_initial_deposition_date 2022-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, E.V.' 1 0000-0002-1546-7899 'Beseiso, D.' 2 0000-0003-3743-9175 'Yatsunyk, L.A.' 3 0000-0003-3946-0939 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Biophysical and structural characterization of telomeric G-quadruplexes from Tetrahymena thermophila in complex with N-Methyl Mesoporphyrin IX ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Beseiso, D.' 1 0000-0003-3743-9175 primary 'Chen, E.V.' 2 0000-0002-1546-7899 primary 'Yatsunyk, L.A.' 3 0000-0003-3946-0939 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8D78 _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.081 _cell.length_a_esd ? _cell.length_b 35.081 _cell.length_b_esd ? _cell.length_c 103.191 _cell.length_c_esd ? _cell.volume 109980.675 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8D78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall 'P 32 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*G)-3') ; 7047.493 1 ? ? ? ? 2 non-polymer syn N-METHYLMESOPORPHYRIN 580.716 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGGTTGGGGTTGGGGTTGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DG n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Tetrahymena thermophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5911 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8D78 _struct_ref.pdbx_db_accession 8D78 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8D78 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8D78 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MMP non-polymer . N-METHYLMESOPORPHYRIN ? 'C35 H40 N4 O4' 580.716 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8D78 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.1 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Well condition contained 0.6-1 M sodium formate, 12-16% PEG 20K, 0.05 M Bis Tris pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 196 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 50.54 _reflns.entry_id 8D78 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.12 _reflns.d_resolution_low 103.19 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4315 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.4 _reflns.pdbx_Rmerge_I_obs 0.110 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.127 _reflns.pdbx_Rpim_I_all 0.061 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.12 _reflns_shell.d_res_low 2.18 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 368 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.071 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.552 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.727 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 97.17 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8D78 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.12 _refine.ls_d_res_low 34.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4201 _refine.ls_number_reflns_R_free 413 _refine.ls_number_reflns_R_work 3788 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.71 _refine.ls_percent_reflns_R_free 9.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2561 _refine.ls_R_factor_R_free 0.2644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2552 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6W9P _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 46.8543 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3294 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.12 _refine_hist.d_res_low 34.40 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 525 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 469 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0037 ? 565 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2326 ? 878 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0245 ? 87 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0042 ? 26 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.8194 ? 216 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.12 2.43 . . 140 1272 99.02 . . . 0.4088 . 0.3967 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.43 3.05 . . 135 1247 96.98 . . . 0.3953 . 0.3346 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.06 34.40 . . 138 1269 94.24 . . . 0.2105 . 0.2155 . . . . . . . . . . . # _struct.entry_id 8D78 _struct.title ;Crystal structure of a Ba stabilized four-tetrad, parallel Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8D78 _struct_keywords.text 'G-quadruplex, Parallel, Four-quartets, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 D BA . BA ? ? A DG 1 A BA 103 1_555 ? ? ? ? ? ? ? 2.662 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 D BA . BA ? ? A DG 2 A BA 103 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 C BA . BA ? ? A DG 3 A BA 102 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc5 metalc ? ? A DG 7 O6 ? ? ? 1_555 D BA . BA ? ? A DG 7 A BA 103 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 D BA . BA ? ? A DG 8 A BA 103 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 C BA . BA ? ? A DG 9 A BA 102 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C BA . BA ? ? A DG 10 A BA 102 1_555 ? ? ? ? ? ? ? 2.942 ? ? metalc9 metalc ? ? A DG 13 O6 ? ? ? 1_555 D BA . BA ? ? A DG 13 A BA 103 1_555 ? ? ? ? ? ? ? 2.930 ? ? metalc10 metalc ? ? A DG 14 O6 ? ? ? 1_555 D BA . BA ? ? A DG 14 A BA 103 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc11 metalc ? ? A DG 15 O6 ? ? ? 1_555 C BA . BA ? ? A DG 15 A BA 102 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc12 metalc ? ? A DG 16 O6 ? ? ? 1_555 C BA . BA ? ? A DG 16 A BA 102 1_555 ? ? ? ? ? ? ? 2.684 ? ? metalc13 metalc ? ? A DG 19 O6 ? ? ? 1_555 D BA . BA ? ? A DG 19 A BA 103 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc14 metalc ? ? A DG 20 O6 ? ? ? 1_555 D BA . BA ? ? A DG 20 A BA 103 1_555 ? ? ? ? ? ? ? 2.736 ? ? metalc15 metalc ? ? A DG 21 O6 ? ? ? 1_555 C BA . BA ? ? A DG 21 A BA 102 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc16 metalc ? ? A DG 22 O6 ? ? ? 1_555 C BA . BA ? ? A DG 22 A BA 102 1_555 ? ? ? ? ? ? ? 3.086 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 1 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 1 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8D78 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.028505 _atom_sites.fract_transf_matrix[1][2] 0.016458 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032915 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009691 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BA ? ? 46.69444 9.00985 ? ? 2.07616 47.04031 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email lyatsun1@swarthmore.edu _pdbx_contact_author.name_first Liliya _pdbx_contact_author.name_last Yatsunyk _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3946-0939 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMP 1 101 101 MMP MMP A . C 3 BA 1 102 1 BA BA A . D 3 BA 1 103 2 BA BA A . E 4 HOH 1 201 2 HOH HOH A . E 4 HOH 2 202 4 HOH HOH A . E 4 HOH 3 203 23 HOH HOH A . E 4 HOH 4 204 22 HOH HOH A . E 4 HOH 5 205 16 HOH HOH A . E 4 HOH 6 206 15 HOH HOH A . E 4 HOH 7 207 26 HOH HOH A . E 4 HOH 8 208 21 HOH HOH A . E 4 HOH 9 209 11 HOH HOH A . E 4 HOH 10 210 18 HOH HOH A . E 4 HOH 11 211 6 HOH HOH A . E 4 HOH 12 212 7 HOH HOH A . E 4 HOH 13 213 13 HOH HOH A . E 4 HOH 14 214 25 HOH HOH A . E 4 HOH 15 215 14 HOH HOH A . E 4 HOH 16 216 20 HOH HOH A . E 4 HOH 17 217 19 HOH HOH A . E 4 HOH 18 218 5 HOH HOH A . E 4 HOH 19 219 24 HOH HOH A . E 4 HOH 20 220 8 HOH HOH A . E 4 HOH 21 221 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 207 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 65.7 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 76.6 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 73.3 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 128.3 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 67.9 ? 6 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 69.5 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 122.4 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 132.8 ? 9 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 65.5 ? 10 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 76.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 156.5 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 116.9 ? 13 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 126.9 ? 14 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 68.4 ? 15 O6 ? A DG 13 ? A DG 13 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 74.5 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 75.3 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 134.2 ? 18 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 120.5 ? 19 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 156.2 ? 20 O6 ? A DG 13 ? A DG 13 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 88.0 ? 21 O6 ? A DG 14 ? A DG 14 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 90.2 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 82.0 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 71.1 ? 24 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 143.5 ? 25 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 103.3 ? 26 O6 ? A DG 13 ? A DG 13 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 149.8 ? 27 O6 ? A DG 14 ? A DG 14 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 77.5 ? 28 O6 ? A DG 19 ? A DG 19 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 80.9 ? 29 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 70.8 ? 30 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 72.4 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 86.6 ? 32 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 138.0 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 83.4 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 73.5 ? 35 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 109.2 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 157.7 ? 37 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 72.7 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 82.9 ? 39 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 150.3 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 118.6 ? 41 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 133.1 ? 42 O6 ? A DG 10 ? A DG 10 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 71.4 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 73.0 ? 44 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 72.6 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 130.5 ? 46 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 112.6 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 144.8 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 67.4 ? 49 O6 ? A DG 16 ? A DG 16 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 81.8 ? 50 O6 ? A DG 3 ? A DG 3 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 88.0 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 79.2 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 158.8 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 119.7 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 123.0 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 68.0 ? 56 O6 ? A DG 21 ? A DG 21 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 67.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-07-05 2 'Structure model' 1 1 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 -y,-x,-z+1/3 5 -x+y,y,-z+2/3 6 x,x-y,-z # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -3.15747664525 _pdbx_refine_tls.origin_y -1.41894852123 _pdbx_refine_tls.origin_z -7.9814105706 _pdbx_refine_tls.T[1][1] 0.846342890728 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.534618242171 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0148338642986 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 1.01363180031 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0467287237319 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.657330994113 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 4.17660403149 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -2.93420540017 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -1.17370440418 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 6.41528118339 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.278478139921 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 5.99429387288 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.315065490677 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0311163660774 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.184706609891 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.670635890838 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.571252881273 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.21643307368 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.498904168496 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.128658017117 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.142469284061 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id E _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id D _pdbx_refine_tls_group.end_auth_seq_id 2 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18_3845 1 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.9.2 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18_3845 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_entry_details.entry_id 8D78 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A MMP 101 ? C18 ? B MMP 1 C18 2 1 N 1 A MMP 101 ? C28 ? B MMP 1 C28 3 1 N 1 A MMP 101 ? C38 ? B MMP 1 C38 4 1 N 1 A MMP 101 ? C39 ? B MMP 1 C39 5 1 N 1 A MMP 101 ? O31 ? B MMP 1 O31 6 1 N 1 A MMP 101 ? O32 ? B MMP 1 O32 7 1 N 1 A MMP 101 ? C48 ? B MMP 1 C48 8 1 N 1 A MMP 101 ? C49 ? B MMP 1 C49 9 1 N 1 A MMP 101 ? O41 ? B MMP 1 O41 10 1 N 1 A MMP 101 ? O42 ? B MMP 1 O42 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DG OP3 O N N 2 DG P P N N 3 DG OP1 O N N 4 DG OP2 O N N 5 DG "O5'" O N N 6 DG "C5'" C N N 7 DG "C4'" C N R 8 DG "O4'" O N N 9 DG "C3'" C N S 10 DG "O3'" O N N 11 DG "C2'" C N N 12 DG "C1'" C N R 13 DG N9 N Y N 14 DG C8 C Y N 15 DG N7 N Y N 16 DG C5 C Y N 17 DG C6 C N N 18 DG O6 O N N 19 DG N1 N N N 20 DG C2 C N N 21 DG N2 N N N 22 DG N3 N N N 23 DG C4 C Y N 24 DG HOP3 H N N 25 DG HOP2 H N N 26 DG "H5'" H N N 27 DG "H5''" H N N 28 DG "H4'" H N N 29 DG "H3'" H N N 30 DG "HO3'" H N N 31 DG "H2'" H N N 32 DG "H2''" H N N 33 DG "H1'" H N N 34 DG H8 H N N 35 DG H1 H N N 36 DG H21 H N N 37 DG H22 H N N 38 DT OP3 O N N 39 DT P P N N 40 DT OP1 O N N 41 DT OP2 O N N 42 DT "O5'" O N N 43 DT "C5'" C N N 44 DT "C4'" C N R 45 DT "O4'" O N N 46 DT "C3'" C N S 47 DT "O3'" O N N 48 DT "C2'" C N N 49 DT "C1'" C N R 50 DT N1 N N N 51 DT C2 C N N 52 DT O2 O N N 53 DT N3 N N N 54 DT C4 C N N 55 DT O4 O N N 56 DT C5 C N N 57 DT C7 C N N 58 DT C6 C N N 59 DT HOP3 H N N 60 DT HOP2 H N N 61 DT "H5'" H N N 62 DT "H5''" H N N 63 DT "H4'" H N N 64 DT "H3'" H N N 65 DT "HO3'" H N N 66 DT "H2'" H N N 67 DT "H2''" H N N 68 DT "H1'" H N N 69 DT H3 H N N 70 DT H71 H N N 71 DT H72 H N N 72 DT H73 H N N 73 DT H6 H N N 74 HOH O O N N 75 HOH H1 H N N 76 HOH H2 H N N 77 MMP C1 C N N 78 MMP N1 N Y N 79 MMP C11 C Y N 80 MMP C12 C Y N 81 MMP C13 C Y N 82 MMP C14 C Y N 83 MMP C15 C Y N 84 MMP C16 C N N 85 MMP C17 C N N 86 MMP C18 C N N 87 MMP N2 N Y N 88 MMP C21 C Y N 89 MMP C22 C N N 90 MMP C23 C N N 91 MMP C24 C Y N 92 MMP C25 C Y N 93 MMP C26 C N N 94 MMP C27 C N N 95 MMP C28 C N N 96 MMP N3 N Y N 97 MMP C31 C Y N 98 MMP C32 C Y N 99 MMP C33 C Y N 100 MMP C34 C Y N 101 MMP C35 C Y N 102 MMP C36 C N N 103 MMP C37 C N N 104 MMP C38 C N N 105 MMP C39 C N N 106 MMP O31 O N N 107 MMP O32 O N N 108 MMP N4 N Y N 109 MMP C41 C Y N 110 MMP C42 C N N 111 MMP C43 C N N 112 MMP C44 C Y N 113 MMP C45 C Y N 114 MMP C46 C N N 115 MMP C47 C N N 116 MMP C48 C N N 117 MMP C49 C N N 118 MMP O41 O N N 119 MMP O42 O N N 120 MMP H11 H N N 121 MMP H12 H N N 122 MMP H13 H N N 123 MMP H15 H N N 124 MMP H161 H N N 125 MMP H162 H N N 126 MMP H163 H N N 127 MMP H171 H N N 128 MMP H172 H N N 129 MMP H181 H N N 130 MMP H182 H N N 131 MMP H183 H N N 132 MMP H25 H N N 133 MMP H261 H N N 134 MMP H262 H N N 135 MMP H263 H N N 136 MMP H271 H N N 137 MMP H272 H N N 138 MMP H281 H N N 139 MMP H282 H N N 140 MMP H283 H N N 141 MMP HN3 H N N 142 MMP H35 H N N 143 MMP H361 H N N 144 MMP H362 H N N 145 MMP H363 H N N 146 MMP H371 H N N 147 MMP H372 H N N 148 MMP H381 H N N 149 MMP H382 H N N 150 MMP HO31 H N N 151 MMP H45 H N N 152 MMP H461 H N N 153 MMP H462 H N N 154 MMP H463 H N N 155 MMP H471 H N N 156 MMP H472 H N N 157 MMP H481 H N N 158 MMP H482 H N N 159 MMP HO41 H N N 160 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 MMP C1 N1 sing N N 79 MMP C1 H11 sing N N 80 MMP C1 H12 sing N N 81 MMP C1 H13 sing N N 82 MMP N1 C11 sing Y N 83 MMP N1 C14 sing Y N 84 MMP C11 C12 doub Y N 85 MMP C11 C45 sing Y N 86 MMP C12 C13 sing Y N 87 MMP C12 C16 sing N N 88 MMP C13 C14 doub Y N 89 MMP C13 C17 sing N N 90 MMP C14 C15 sing Y N 91 MMP C15 C21 doub Y Z 92 MMP C15 H15 sing N N 93 MMP C16 H161 sing N N 94 MMP C16 H162 sing N N 95 MMP C16 H163 sing N N 96 MMP C17 C18 sing N N 97 MMP C17 H171 sing N N 98 MMP C17 H172 sing N N 99 MMP C18 H181 sing N N 100 MMP C18 H182 sing N N 101 MMP C18 H183 sing N N 102 MMP N2 C21 sing Y N 103 MMP N2 C24 doub Y N 104 MMP C21 C22 sing N N 105 MMP C22 C23 doub N N 106 MMP C22 C26 sing N N 107 MMP C23 C24 sing N N 108 MMP C23 C27 sing N N 109 MMP C24 C25 sing Y N 110 MMP C25 C31 doub Y Z 111 MMP C25 H25 sing N N 112 MMP C26 H261 sing N N 113 MMP C26 H262 sing N N 114 MMP C26 H263 sing N N 115 MMP C27 C28 sing N N 116 MMP C27 H271 sing N N 117 MMP C27 H272 sing N N 118 MMP C28 H281 sing N N 119 MMP C28 H282 sing N N 120 MMP C28 H283 sing N N 121 MMP N3 C31 sing Y N 122 MMP N3 C34 sing Y N 123 MMP N3 HN3 sing N N 124 MMP C31 C32 sing Y N 125 MMP C32 C33 doub Y N 126 MMP C32 C36 sing N N 127 MMP C33 C34 sing Y N 128 MMP C33 C37 sing N N 129 MMP C34 C35 doub Y Z 130 MMP C35 C41 sing Y N 131 MMP C35 H35 sing N N 132 MMP C36 H361 sing N N 133 MMP C36 H362 sing N N 134 MMP C36 H363 sing N N 135 MMP C37 C38 sing N N 136 MMP C37 H371 sing N N 137 MMP C37 H372 sing N N 138 MMP C38 C39 sing N N 139 MMP C38 H381 sing N N 140 MMP C38 H382 sing N N 141 MMP C39 O31 sing N N 142 MMP C39 O32 doub N N 143 MMP O31 HO31 sing N N 144 MMP N4 C41 doub Y N 145 MMP N4 C44 sing Y N 146 MMP C41 C42 sing N N 147 MMP C42 C43 doub N N 148 MMP C42 C47 sing N N 149 MMP C43 C44 sing N N 150 MMP C43 C46 sing N N 151 MMP C44 C45 doub Y Z 152 MMP C45 H45 sing N N 153 MMP C46 H461 sing N N 154 MMP C46 H462 sing N N 155 MMP C46 H463 sing N N 156 MMP C47 C48 sing N N 157 MMP C47 H471 sing N N 158 MMP C47 H472 sing N N 159 MMP C48 C49 sing N N 160 MMP C48 H481 sing N N 161 MMP C48 H482 sing N N 162 MMP C49 O41 sing N N 163 MMP C49 O42 doub N N 164 MMP O41 HO41 sing N N 165 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8D78 'double helix' 8D78 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 7 1_555 A DG 13 1_555 1.629 2.838 0.292 -10.510 -4.643 -97.433 1 A_DG7:DG13_A A 7 ? A 13 ? 6 3 1 A DG 8 1_555 A DG 14 1_555 1.491 3.198 0.256 2.559 -4.586 -96.994 2 A_DG8:DG14_A A 8 ? A 14 ? 6 3 1 A DG 9 1_555 A DG 15 1_555 1.765 3.351 -0.225 3.397 -12.036 -87.512 3 A_DG9:DG15_A A 9 ? A 15 ? 6 3 1 A DG 3 1_555 A DG 21 1_555 -1.725 -3.052 0.071 1.042 3.866 87.162 4 A_DG3:DG21_A A 3 ? A 21 ? 6 3 1 A DG 16 1_555 A DG 22 1_555 1.797 2.845 -0.229 10.041 -4.419 -91.075 5 A_DG16:DG22_A A 16 ? A 22 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 7 1_555 A DG 13 1_555 A DG 8 1_555 A DG 14 1_555 -0.933 -1.116 3.026 1.315 4.074 31.300 -2.728 1.933 2.821 7.506 -2.423 31.584 1 AA_DG7DG8:DG14DG13_AA A 7 ? A 13 ? A 8 ? A 14 ? 1 A DG 8 1_555 A DG 14 1_555 A DG 9 1_555 A DG 15 1_555 -0.472 -0.805 3.164 1.228 -2.749 26.024 -1.048 1.366 3.205 -6.079 -2.714 26.194 2 AA_DG8DG9:DG15DG14_AA A 8 ? A 14 ? A 9 ? A 15 ? 1 A DG 9 1_555 A DG 15 1_555 A DG 3 1_555 A DG 21 1_555 1.593 3.216 0.272 0.326 -6.289 -179.306 -1.608 0.797 0.274 3.145 0.163 -179.307 3 AA_DG9DG3:DG21DG15_AA A 9 ? A 15 ? A 3 ? A 21 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R15CA253134 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-METHYLMESOPORPHYRIN MMP 3 'BARIUM ION' BA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6W9P _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 32 1 2' _space_group.name_Hall 'P 32 2 (x,y,z+1/6)' _space_group.IT_number 153 _space_group.crystal_system trigonal _space_group.id 1 #