HEADER DNA BINDING PROTEIN/DNA 08-JUN-22 8D8M TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE TITLE 3 COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE GROWN IN TITLE 4 A CALCIUM CHLORIDE CRYSTALLIZATION SOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*C COMPND 4 P*TP*CP*AP*GP*AP*CP*GP*GP*A)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*C COMPND 10 P*AP*GP*GP*TP*CP*CP*GP*GP*A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,C.D.SNOW REVDAT 2 25-OCT-23 8D8M 1 REMARK REVDAT 1 28-JUN-23 8D8M 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.D.SNOW JRNL TITL DESIGNED CRYSTALLINE ASSEMBLIES OF PROTEIN AND DNA ENABLE JRNL TITL 2 SITE-SPECIFIC INSTALLATION OF A GUEST PROTEIN, DNA, AND JRNL TITL 3 SMALL MOLECULE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 12179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9800 - 6.4400 0.99 1301 143 0.1925 0.1943 REMARK 3 2 6.4400 - 5.1200 1.00 1241 143 0.1932 0.2300 REMARK 3 3 5.1100 - 4.4700 1.00 1243 136 0.1810 0.2305 REMARK 3 4 4.4700 - 4.0600 1.00 1212 130 0.2074 0.2455 REMARK 3 5 4.0600 - 3.7700 0.96 1184 137 0.2895 0.3259 REMARK 3 6 3.7700 - 3.5500 0.99 1201 131 0.2890 0.2998 REMARK 3 7 3.5500 - 3.3700 0.98 1181 132 0.2839 0.3466 REMARK 3 8 3.3700 - 3.2200 0.98 1201 123 0.2042 0.2810 REMARK 3 9 3.2200 - 3.1000 1.00 1204 136 0.3601 0.4361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.434 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3261 REMARK 3 ANGLE : 1.578 4679 REMARK 3 CHIRALITY : 0.088 508 REMARK 3 PLANARITY : 0.013 382 REMARK 3 DIHEDRAL : 27.634 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4899 -0.3148 -56.3794 REMARK 3 T TENSOR REMARK 3 T11: 0.9277 T22: 0.9040 REMARK 3 T33: 0.9175 T12: 0.2081 REMARK 3 T13: -0.0148 T23: 0.3538 REMARK 3 L TENSOR REMARK 3 L11: 0.1386 L22: 0.0341 REMARK 3 L33: 0.0779 L12: -0.0192 REMARK 3 L13: -0.0666 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: 0.5573 S13: 0.4254 REMARK 3 S21: -0.3955 S22: 0.0359 S23: 0.1449 REMARK 3 S31: -0.2962 S32: 0.0506 S33: -0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8301 -33.2377 -22.1609 REMARK 3 T TENSOR REMARK 3 T11: 1.5062 T22: 0.7348 REMARK 3 T33: 1.3489 T12: 0.6242 REMARK 3 T13: 0.0449 T23: 1.2107 REMARK 3 L TENSOR REMARK 3 L11: 0.0991 L22: 0.0641 REMARK 3 L33: 0.0163 L12: -0.0854 REMARK 3 L13: 0.0444 L23: -0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.1865 S13: -0.3461 REMARK 3 S21: 0.3912 S22: -0.0471 S23: -0.0406 REMARK 3 S31: 0.3258 S32: 0.1082 S33: -0.0574 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2719 -32.7315 -25.5217 REMARK 3 T TENSOR REMARK 3 T11: 1.4481 T22: 0.8667 REMARK 3 T33: 1.2142 T12: 0.6359 REMARK 3 T13: -0.2318 T23: 0.8779 REMARK 3 L TENSOR REMARK 3 L11: 0.0685 L22: 0.0746 REMARK 3 L33: 0.0819 L12: -0.0716 REMARK 3 L13: -0.0543 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.2423 S12: -0.3912 S13: -0.4760 REMARK 3 S21: 0.3629 S22: 0.0137 S23: -0.2130 REMARK 3 S31: 0.3370 S32: 0.2144 S33: 0.0362 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7931 2.8573 -56.5263 REMARK 3 T TENSOR REMARK 3 T11: 1.3510 T22: 0.7109 REMARK 3 T33: 0.7732 T12: 0.2638 REMARK 3 T13: -0.0216 T23: 0.2858 REMARK 3 L TENSOR REMARK 3 L11: 0.0634 L22: 0.0084 REMARK 3 L33: 0.0578 L12: 0.0199 REMARK 3 L13: -0.0233 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: 0.3194 S13: 0.4005 REMARK 3 S21: -0.5751 S22: 0.0599 S23: 0.1601 REMARK 3 S31: -0.6896 S32: 0.0799 S33: -0.0212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7257 -14.8458 -18.4791 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.8713 REMARK 3 T33: 0.4262 T12: 0.2241 REMARK 3 T13: -0.1684 T23: 0.7194 REMARK 3 L TENSOR REMARK 3 L11: 0.0337 L22: 0.0777 REMARK 3 L33: 0.1938 L12: 0.0276 REMARK 3 L13: 0.0515 L23: -0.0651 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.3193 S13: -0.1609 REMARK 3 S21: -0.1023 S22: -0.1895 S23: -0.1562 REMARK 3 S31: 0.3964 S32: -0.0137 S33: -0.2779 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3505 -6.3988 -17.0734 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.9828 REMARK 3 T33: 0.4230 T12: 0.2582 REMARK 3 T13: 0.0177 T23: 0.1471 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 0.0096 REMARK 3 L33: 0.0513 L12: 0.0146 REMARK 3 L13: 0.0332 L23: 0.0303 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.3264 S13: -0.0874 REMARK 3 S21: 0.1162 S22: -0.1362 S23: -0.0662 REMARK 3 S31: 0.2579 S32: 0.0937 S33: -0.0244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8750 -5.4171 -27.9043 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.7096 REMARK 3 T33: 0.4201 T12: 0.1386 REMARK 3 T13: 0.0478 T23: 0.1766 REMARK 3 L TENSOR REMARK 3 L11: 0.0584 L22: 0.5240 REMARK 3 L33: 0.0275 L12: 0.0905 REMARK 3 L13: -0.0128 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.2357 S12: -0.5541 S13: 0.1111 REMARK 3 S21: -0.2940 S22: 0.0043 S23: 0.2531 REMARK 3 S31: 0.0591 S32: -0.0810 S33: -0.0949 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4584 -7.9191 -35.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.4324 T22: 0.4738 REMARK 3 T33: 0.6365 T12: -0.0082 REMARK 3 T13: 0.0219 T23: 0.1002 REMARK 3 L TENSOR REMARK 3 L11: 0.0376 L22: 0.0067 REMARK 3 L33: 0.0148 L12: -0.0161 REMARK 3 L13: 0.0044 L23: 0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0050 S13: 0.0954 REMARK 3 S21: -0.0789 S22: 0.0244 S23: 0.1048 REMARK 3 S31: 0.0284 S32: -0.1576 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12285 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11450 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM MGCL2, 24% PEG 400, AND 80 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.66100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.59450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.32250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.66100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.59450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.32250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.66100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.59450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.32250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.66100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.59450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.32250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 33 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA A 33 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 33 C2 N3 C4 REMARK 470 DA B 34 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 34 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 34 C2 N3 C4 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG A 21 O HOH A 201 2.14 REMARK 500 N4 DC A 3 O6 DG B 33 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 12 O3' DT A 12 C3' -0.049 REMARK 500 DG A 31 O3' DG A 31 C3' -0.069 REMARK 500 DA B 24 N9 DA B 24 C4 0.036 REMARK 500 DC B 30 C1' DC B 30 N1 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 2 C1' - O4' - C4' ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 11 O5' - P - OP2 ANGL. DEV. = -7.2 DEGREES REMARK 500 DG A 21 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 26 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 32 O4' - C1' - N9 ANGL. DEV. = 8.6 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 13 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 23 O3' - P - OP2 ANGL. DEV. = 9.7 DEGREES REMARK 500 DG B 27 P - O5' - C5' ANGL. DEV. = -10.8 DEGREES REMARK 500 DG B 28 O3' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 DG B 32 O5' - P - OP2 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG B 33 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 109.19 -50.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 77.5 REMARK 620 3 HOH C 401 O 58.1 135.6 REMARK 620 4 HOH C 402 O 108.2 81.5 110.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS THE STARTING MODEL FOR THIS STRUCTURE AND CONTAINS THE REMARK 900 SAME PROTEIN COMPLEXED TO A SIMILAR DNA DUPLEX. DBREF 8D8M A 2 33 PDB 8D8M 8D8M 2 33 DBREF 8D8M B 3 34 PDB 8D8M 8D8M 3 34 DBREF 8D8M C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 8D8M MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 8D8M ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 8D8M GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 8D8M SER C -8 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 8D8M HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 8D8M GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 8D8M SER C 0 UNP P03856 EXPRESSION TAG SEQADV 8D8M PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 32 DC DC DC DG DG DA DC DC DT DG DT DG DA SEQRES 2 A 32 DC DA DA DA DT DT DG DC DC DC DT DC DA SEQRES 3 A 32 DG DA DC DG DG DA SEQRES 1 B 32 DG DC DC DG DT DC DT DG DA DG DG DG DC SEQRES 2 B 32 DA DA DT DT DT DG DT DC DA DC DA DG DG SEQRES 3 B 32 DT DC DC DG DG DA SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET CA A 101 1 HET CA C 301 1 HETNAM CA CALCIUM ION FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *3(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 2 ILE C 59 HIS C 63 0 SHEET 2 AA2 2 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK OP1 DT A 19 CA CA A 101 1555 1555 3.01 LINK OE2 GLU C 77 CA CA C 301 1555 1555 2.50 LINK OD1 ASP C 81 CA CA C 301 1555 1555 2.62 LINK CA CA C 301 O HOH C 401 1555 1555 2.20 LINK CA CA C 301 O HOH C 402 1555 1555 2.22 CRYST1 73.322 133.189 134.645 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007427 0.00000