HEADER DNA 09-JUN-22 8D93 TITLE [2T7] SELF-ASSEMBLING TENSEGRITY TRIANGLE WITH R3 SYMMETRY AT 2.96 A TITLE 2 RESOLUTION, UPDATE AND JUNCTION CUT FOR ENTRY 3GBI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*AP*CP*AP*CP*CP*GP*T)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (5'-D(P*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, DNA NANOTECHNOLOGY, NANOMATERIALS, LINKING KEYWDS 2 NUMBER, DNA EXPDTA X-RAY DIFFRACTION AUTHOR S.VECCHIONI,K.WOLOSZYN,B.LU,R.SHA,Y.P.OHAYON,N.C.SEEMAN REVDAT 3 25-OCT-23 8D93 1 REMARK REVDAT 2 05-APR-23 8D93 1 JRNL REVDAT 1 25-JAN-23 8D93 0 JRNL AUTH S.VECCHIONI,B.LU,J.JANOWSKI,K.WOLOSZYN,N.JONOSKA,N.C.SEEMAN, JRNL AUTH 2 C.MAO,Y.P.OHAYON,R.SHA JRNL TITL THE RULE OF THIRDS: CONTROLLING JUNCTION CHIRALITY AND JRNL TITL 2 POLARITY IN 3D DNA TILES. JRNL REF SMALL V. 19 06511 2023 JRNL REFN ESSN 1613-6829 JRNL PMID 36585389 JRNL DOI 10.1002/SMLL.202206511 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.VECCHIONI,J.JANOWSKI,B.LU,Y.P.OHAYON,R.SHA,K.WOLOSZYN, REMARK 1 AUTH 2 C.MAO,N.C.SEEMAN REMARK 1 TITL MIRROR NANOMATERIALS: SELF-ASSEMBLY OF LEFT-HANDED, REMARK 1 TITL 2 ANTI-TENSEGRITY DNA TRIANGLES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 40.0 REMARK 3 NUMBER OF REFLECTIONS : 3333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2900 - 2.9600 0.40 3157 176 0.1847 0.2258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.041 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 119.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 955 REMARK 3 ANGLE : 1.410 1463 REMARK 3 CHIRALITY : 0.072 166 REMARK 3 PLANARITY : 0.010 42 REMARK 3 DIHEDRAL : 42.728 403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.317 -5.367 -1.616 REMARK 3 T TENSOR REMARK 3 T11: 1.6056 T22: 1.9413 REMARK 3 T33: 1.3641 T12: -0.4345 REMARK 3 T13: -0.3334 T23: -0.5139 REMARK 3 L TENSOR REMARK 3 L11: 4.4494 L22: 2.3988 REMARK 3 L33: 0.4545 L12: 1.2537 REMARK 3 L13: 1.2346 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.8660 S12: -1.4720 S13: -0.2453 REMARK 3 S21: 0.7694 S22: -0.3243 S23: -1.4097 REMARK 3 S31: 0.0757 S32: 0.4575 S33: -0.8352 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 105:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.816 -6.587 -11.052 REMARK 3 T TENSOR REMARK 3 T11: 0.5220 T22: 1.8065 REMARK 3 T33: 1.0922 T12: -0.2298 REMARK 3 T13: 0.6063 T23: -0.5980 REMARK 3 L TENSOR REMARK 3 L11: 5.9144 L22: 5.3705 REMARK 3 L33: 3.9490 L12: -0.6243 REMARK 3 L13: 3.1957 L23: -3.7698 REMARK 3 S TENSOR REMARK 3 S11: 1.1309 S12: 1.8887 S13: -0.4973 REMARK 3 S21: -0.9326 S22: 0.5726 S23: -0.4972 REMARK 3 S31: -0.0071 S32: -0.1516 S33: 2.1156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 111:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.543 10.702 -9.944 REMARK 3 T TENSOR REMARK 3 T11: 0.9233 T22: 1.6694 REMARK 3 T33: 1.4027 T12: -0.2463 REMARK 3 T13: 0.3071 T23: -0.6402 REMARK 3 L TENSOR REMARK 3 L11: 1.4344 L22: 0.7218 REMARK 3 L33: 7.0295 L12: -0.1759 REMARK 3 L13: -1.8108 L23: 2.0238 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: 0.1405 S13: 0.9624 REMARK 3 S21: -1.0369 S22: -0.3200 S23: -0.0191 REMARK 3 S31: -0.5208 S32: -1.8009 S33: -0.2340 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 101:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.362 -0.909 -12.561 REMARK 3 T TENSOR REMARK 3 T11: 0.9061 T22: 1.2013 REMARK 3 T33: 1.3720 T12: 0.2339 REMARK 3 T13: 0.1010 T23: -0.5742 REMARK 3 L TENSOR REMARK 3 L11: 7.2945 L22: 6.8653 REMARK 3 L33: 7.1543 L12: 1.2054 REMARK 3 L13: 2.4363 L23: 0.4776 REMARK 3 S TENSOR REMARK 3 S11: 1.7766 S12: -0.3111 S13: -0.0242 REMARK 3 S21: -0.4070 S22: -0.7690 S23: -1.0174 REMARK 3 S31: 0.5193 S32: -0.2105 S33: -1.6474 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN D AND RESID 113:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.690 5.349 -18.474 REMARK 3 T TENSOR REMARK 3 T11: 1.1696 T22: 1.2722 REMARK 3 T33: 1.0494 T12: 0.2326 REMARK 3 T13: 0.1443 T23: -0.2872 REMARK 3 L TENSOR REMARK 3 L11: 6.4348 L22: 2.9452 REMARK 3 L33: 0.6954 L12: -1.2649 REMARK 3 L13: -1.2625 L23: -0.8518 REMARK 3 S TENSOR REMARK 3 S11: 0.6566 S12: 0.4090 S13: 0.4959 REMARK 3 S21: -1.0957 S22: 0.1727 S23: 0.0082 REMARK 3 S31: -0.8296 S32: -0.0193 S33: 0.5934 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.007 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 66.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 57.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM TRIS, 2 MM EDTA, 20 MM ACETIC REMARK 280 ACID, 125 MM MAGNESIUM ACETATE, 583 MM AMMONIUM SULFATE, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.77350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.46879 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.08933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.77350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.46879 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.08933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.77350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.46879 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.08933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.93759 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.17867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.93759 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.17867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.93759 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.17867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG B 113 N4 DC D 113 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 DG A 101 N4 DC C 102 6555 2.11 REMARK 500 O5' DT C 101 O3' DC C 114 8544 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 106 O3' DC B 106 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 102 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 103 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC A 107 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG A 110 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT A 111 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA A 112 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA B 107 C3' - O3' - P ANGL. DEV. = 24.3 DEGREES REMARK 500 DC B 111 O3' - P - O5' ANGL. DEV. = -26.3 DEGREES REMARK 500 DC B 111 O3' - P - OP2 ANGL. DEV. = 44.1 DEGREES REMARK 500 DC B 111 O3' - P - OP1 ANGL. DEV. = -25.5 DEGREES REMARK 500 DC C 102 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 103 O5' - P - OP2 ANGL. DEV. = -8.2 DEGREES REMARK 500 DT C 103 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DT C 103 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 104 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG C 104 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 106 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG C 110 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 113 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBI RELATED DB: PDB REMARK 900 ORIGINAL SOLUTION AT 4.0 A, WITH A DUPLEX ASU DBREF 8D93 A 101 112 PDB 8D93 8D93 101 112 DBREF 8D93 B 105 114 PDB 8D93 8D93 105 114 DBREF 8D93 C 101 114 PDB 8D93 8D93 101 114 DBREF 8D93 D 113 121 PDB 8D93 8D93 113 121 SEQRES 1 A 12 DG DA DG DC DA DG DC DC DT DG DT DA SEQRES 1 B 7 DA DC DA DC DC DG DT SEQRES 1 C 14 DT DC DT DG DA DT DG DT DG DG DC DT DG SEQRES 2 C 14 DC SEQRES 1 D 9 DC DG DG DA DC DA DT DC DA CRYST1 105.547 105.547 96.268 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009474 0.005470 0.000000 0.00000 SCALE2 0.000000 0.010940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010388 0.00000