data_8DA7 # _entry.id 8DA7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DA7 pdb_00008da7 10.2210/pdb8da7/pdb WWPDB D_1000266207 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8DA3 unspecified PDB . 8DA4 unspecified PDB . 8DA5 unspecified PDB . 8DA6 unspecified PDB . 8DA8 unspecified PDB . 8DA9 unspecified PDB . 8DAA unspecified PDB . 8DAB unspecified PDB . 8DAC unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DA7 _pdbx_database_status.recvd_initial_deposition_date 2022-06-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jude, K.M.' 1 0000-0002-3675-5136 'Yang, A.' 2 0000-0002-8704-0288 'Garcia, K.C.' 3 0000-0001-9273-0278 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 381 _citation.language ? _citation.page_first eadh1720 _citation.page_last eadh1720 _citation.title 'Deploying synthetic coevolution and machine learning to engineer protein-protein interactions.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.adh1720 _citation.pdbx_database_id_PubMed 37499032 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, A.' 1 0000-0002-8704-0288 primary 'Jude, K.M.' 2 0000-0002-3675-5136 primary 'Lai, B.' 3 ? primary 'Minot, M.' 4 0000-0003-0225-9107 primary 'Kocyla, A.M.' 5 0000-0002-0258-4551 primary 'Glassman, C.R.' 6 0000-0002-3342-7989 primary 'Nishimiya, D.' 7 0000-0002-3529-5916 primary 'Kim, Y.S.' 8 0000-0003-3332-0652 primary 'Reddy, S.T.' 9 0000-0002-9177-0857 primary 'Khan, A.A.' 10 0000-0003-3933-8538 primary 'Garcia, K.C.' 11 0000-0001-9273-0278 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8DA7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.617 _cell.length_a_esd ? _cell.length_b 42.380 _cell.length_b_esd ? _cell.length_c 74.222 _cell.length_c_esd ? _cell.volume 112034.284 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Immunoglobulin G-binding protein A' 7911.812 1 ? 'Q9L, F13I, G29A, I31F' ? ? 2 polymer man 'affibody LL1.FIFV' 7704.648 1 ? ? ? ? 3 non-polymer syn 'MALONATE ION' 102.046 1 ? ? ? ? 4 water nat water 18.015 165 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IgG-binding protein A,Staphylococcal protein A,SpA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(LAL)VDN(MLY)FN(MLY)ELQNAIYEILHLPNLNEEQRNAFFQSLKDDPSQSANLLAEA(MLY)KLNDAQAP(MLY)L EHHHHHH ; AVDNKFNKELQNAIYEILHLPNLNEEQRNAFFQSLKDDPSQSANLLAEAKKLNDAQAPKLEHHHHHH A ? 2 'polypeptide(L)' no yes 'AVDNKFNKEFSVAGREIITLPNLNDPQ(MLY)KAFVFSLWDDPSQSANLLAEA(MLY)(MLY)LNDAQAPKLEHHHHHH' AVDNKFNKEFSVAGREIITLPNLNDPQKKAFVFSLWDDPSQSANLLAEAKKLNDAQAPKLEHHHHHH B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LAL n 1 2 VAL n 1 3 ASP n 1 4 ASN n 1 5 MLY n 1 6 PHE n 1 7 ASN n 1 8 MLY n 1 9 GLU n 1 10 LEU n 1 11 GLN n 1 12 ASN n 1 13 ALA n 1 14 ILE n 1 15 TYR n 1 16 GLU n 1 17 ILE n 1 18 LEU n 1 19 HIS n 1 20 LEU n 1 21 PRO n 1 22 ASN n 1 23 LEU n 1 24 ASN n 1 25 GLU n 1 26 GLU n 1 27 GLN n 1 28 ARG n 1 29 ASN n 1 30 ALA n 1 31 PHE n 1 32 PHE n 1 33 GLN n 1 34 SER n 1 35 LEU n 1 36 LYS n 1 37 ASP n 1 38 ASP n 1 39 PRO n 1 40 SER n 1 41 GLN n 1 42 SER n 1 43 ALA n 1 44 ASN n 1 45 LEU n 1 46 LEU n 1 47 ALA n 1 48 GLU n 1 49 ALA n 1 50 MLY n 1 51 LYS n 1 52 LEU n 1 53 ASN n 1 54 ASP n 1 55 ALA n 1 56 GLN n 1 57 ALA n 1 58 PRO n 1 59 MLY n 1 60 LEU n 1 61 GLU n 1 62 HIS n 1 63 HIS n 1 64 HIS n 1 65 HIS n 1 66 HIS n 1 67 HIS n 2 1 ALA n 2 2 VAL n 2 3 ASP n 2 4 ASN n 2 5 LYS n 2 6 PHE n 2 7 ASN n 2 8 LYS n 2 9 GLU n 2 10 PHE n 2 11 SER n 2 12 VAL n 2 13 ALA n 2 14 GLY n 2 15 ARG n 2 16 GLU n 2 17 ILE n 2 18 ILE n 2 19 THR n 2 20 LEU n 2 21 PRO n 2 22 ASN n 2 23 LEU n 2 24 ASN n 2 25 ASP n 2 26 PRO n 2 27 GLN n 2 28 MLY n 2 29 LYS n 2 30 ALA n 2 31 PHE n 2 32 VAL n 2 33 PHE n 2 34 SER n 2 35 LEU n 2 36 TRP n 2 37 ASP n 2 38 ASP n 2 39 PRO n 2 40 SER n 2 41 GLN n 2 42 SER n 2 43 ALA n 2 44 ASN n 2 45 LEU n 2 46 LEU n 2 47 ALA n 2 48 GLU n 2 49 ALA n 2 50 MLY n 2 51 MLY n 2 52 LEU n 2 53 ASN n 2 54 ASP n 2 55 ALA n 2 56 GLN n 2 57 ALA n 2 58 PRO n 2 59 LYS n 2 60 LEU n 2 61 GLU n 2 62 HIS n 2 63 HIS n 2 64 HIS n 2 65 HIS n 2 66 HIS n 2 67 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 67 ? ? spa ? ? ? ? ? ? 'Staphylococcus aureus' 1280 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 67 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPA_STAAU P38507 ? 1 DNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPK 213 2 PDB 8DA7 8DA7 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DA7 A 3 ? 59 ? P38507 213 ? 269 ? 2 58 2 2 8DA7 B 1 ? 67 ? 8DA7 0 ? 66 ? 0 66 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8DA7 LAL A 1 ? UNP P38507 ? ? 'expression tag' 0 1 1 8DA7 VAL A 2 ? UNP P38507 ? ? 'expression tag' 1 2 1 8DA7 LEU A 10 ? UNP P38507 GLN 220 'engineered mutation' 9 3 1 8DA7 ILE A 14 ? UNP P38507 PHE 224 'engineered mutation' 13 4 1 8DA7 ALA A 30 ? UNP P38507 GLY 240 'engineered mutation' 29 5 1 8DA7 PHE A 32 ? UNP P38507 ILE 242 'engineered mutation' 31 6 1 8DA7 LEU A 60 ? UNP P38507 ? ? 'expression tag' 59 7 1 8DA7 GLU A 61 ? UNP P38507 ? ? 'expression tag' 60 8 1 8DA7 HIS A 62 ? UNP P38507 ? ? 'expression tag' 61 9 1 8DA7 HIS A 63 ? UNP P38507 ? ? 'expression tag' 62 10 1 8DA7 HIS A 64 ? UNP P38507 ? ? 'expression tag' 63 11 1 8DA7 HIS A 65 ? UNP P38507 ? ? 'expression tag' 64 12 1 8DA7 HIS A 66 ? UNP P38507 ? ? 'expression tag' 65 13 1 8DA7 HIS A 67 ? UNP P38507 ? ? 'expression tag' 66 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LAL 'L-peptide linking' n N,N-DIMETHYL-L-ALANINE ? 'C5 H11 N O2' 117.146 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DA7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 31.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2.5 M AmmSO4, 100 mM tris pH 8.5 cryoprotected with Na malonate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-01-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.77487 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.77487 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 13.13 _reflns.entry_id 8DA7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.02 _reflns.d_resolution_low 27.91 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 57264 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.75 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.1 _reflns.pdbx_Rmerge_I_obs .06462 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.91 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all .06915 _reflns.pdbx_Rpim_I_all .02412 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 1.02 _reflns_shell.d_res_low 1.056 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs .8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 5584 _reflns_shell.percent_possible_all 97.38 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.47 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.631 _reflns_shell.pdbx_Rpim_I_all .8953 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .456 _reflns_shell.pdbx_CC_star .791 _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 20.71 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DA7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.02 _refine.ls_d_res_low 27.27 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 57229 _refine.ls_number_reflns_R_free 2873 _refine.ls_number_reflns_R_work 54356 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.75 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1612 _refine.ls_R_factor_R_free 0.1828 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1601 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5djt _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.0981 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1291 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.02 _refine_hist.d_res_low 27.27 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 1086 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 914 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0159 ? 975 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4199 ? 1330 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0890 ? 145 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0108 ? 179 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.5586 ? 384 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.02 1.04 . . 137 2498 97.02 . . . 0.4274 . 0.3822 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.04 1.05 . . 108 2559 97.84 . . . 0.3787 . 0.3292 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.05 1.07 . . 130 2534 98.30 . . . 0.2881 . 0.2849 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.07 1.09 . . 140 2541 98.10 . . . 0.2641 . 0.2587 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.09 1.12 . . 128 2541 97.77 . . . 0.2208 . 0.2389 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.12 1.14 . . 132 2549 98.57 . . . 0.2603 . 0.2179 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.14 1.17 . . 151 2535 98.90 . . . 0.2240 . 0.2077 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.17 1.20 . . 136 2552 97.92 . . . 0.2073 . 0.1898 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.20 1.23 . . 162 2534 98.65 . . . 0.2291 . 0.1719 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.23 1.27 . . 145 2554 98.72 . . . 0.2074 . 0.1676 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.27 1.31 . . 141 2565 99.12 . . . 0.1900 . 0.1505 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.31 1.35 . . 147 2592 99.31 . . . 0.1533 . 0.1475 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.35 1.41 . . 124 2595 99.41 . . . 0.1781 . 0.1559 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.41 1.47 . . 134 2606 99.24 . . . 0.1904 . 0.1400 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.47 1.55 . . 141 2602 99.46 . . . 0.1488 . 0.1293 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.55 1.65 . . 148 2554 97.97 . . . 0.1577 . 0.1260 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.65 1.77 . . 130 2636 99.53 . . . 0.1852 . 0.1352 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.77 1.95 . . 125 2655 99.93 . . . 0.1931 . 0.1478 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.95 2.23 . . 126 2691 99.93 . . . 0.1480 . 0.1329 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.23 2.81 . . 137 2687 99.93 . . . 0.1511 . 0.1524 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.81 27.27 . . 151 2776 98.25 . . . 0.1897 . 0.1675 . . . . . . . . . . . # _struct.entry_id 8DA7 _struct.title 'Coevolved affibody-Z domain pair LL1.c6' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DA7 _struct_keywords.text 'affibody, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 3 ? PHE A 6 ? ASP A 2 PHE A 5 5 ? 4 HELX_P HELX_P2 AA2 ASN A 7 ? LEU A 20 ? ASN A 6 LEU A 19 1 ? 14 HELX_P HELX_P3 AA3 ASN A 24 ? ASP A 38 ? ASN A 23 ASP A 37 1 ? 15 HELX_P HELX_P4 AA4 GLN A 41 ? GLN A 56 ? GLN A 40 GLN A 55 1 ? 16 HELX_P HELX_P5 AA5 ASN B 7 ? LEU B 20 ? ASN B 6 LEU B 19 1 ? 14 HELX_P HELX_P6 AA6 ASN B 24 ? ASP B 38 ? ASN B 23 ASP B 37 1 ? 15 HELX_P HELX_P7 AA7 GLN B 41 ? GLN B 56 ? GLN B 40 GLN B 55 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LAL 1 C ? ? ? 1_555 A VAL 2 N ? ? A LAL 0 A VAL 1 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale2 covale both ? A ASN 4 C ? ? ? 1_555 A MLY 5 N ? ? A ASN 3 A MLY 4 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A MLY 5 C ? ? ? 1_555 A PHE 6 N ? ? A MLY 4 A PHE 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A ASN 7 C ? ? ? 1_555 A MLY 8 N ? ? A ASN 6 A MLY 7 1_555 ? ? ? ? ? ? ? 1.296 ? ? covale5 covale both ? A MLY 8 C ? ? ? 1_555 A GLU 9 N ? ? A MLY 7 A GLU 8 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale6 covale both ? A ALA 49 C ? ? ? 1_555 A MLY 50 N ? ? A ALA 48 A MLY 49 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale7 covale both ? A MLY 50 C ? ? ? 1_555 A LYS 51 N ? ? A MLY 49 A LYS 50 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale8 covale both ? A PRO 58 C ? ? ? 1_555 A MLY 59 N ? ? A PRO 57 A MLY 58 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale9 covale both ? B GLN 27 C ? ? ? 1_555 B MLY 28 N ? ? B GLN 26 B MLY 27 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale10 covale both ? B MLY 28 C ? ? ? 1_555 B LYS 29 N ? ? B MLY 27 B LYS 28 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale11 covale both ? B ALA 49 C ? ? ? 1_555 B MLY 50 N ? ? B ALA 48 B MLY 49 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? B MLY 50 C ? ? ? 1_555 B MLY 51 N ? ? B MLY 49 B MLY 50 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale13 covale both ? B MLY 51 C ? ? ? 1_555 B LEU 52 N ? ? B MLY 50 B LEU 51 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8DA7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.028076 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013473 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LAL 1 0 0 LAL LAL A . n A 1 2 VAL 2 1 1 VAL VAL A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 MLY 5 4 4 MLY MLY A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 ASN 7 6 6 ASN ASN A . n A 1 8 MLY 8 7 7 MLY MLY A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 ARG 28 27 27 ARG ARG A . n A 1 29 ASN 29 28 28 ASN ASN A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 GLN 41 40 40 GLN GLN A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 MLY 50 49 49 MLY MLY A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 MLY 59 58 58 MLY MLY A . n A 1 60 LEU 60 59 ? ? ? A . n A 1 61 GLU 61 60 ? ? ? A . n A 1 62 HIS 62 61 ? ? ? A . n A 1 63 HIS 63 62 ? ? ? A . n A 1 64 HIS 64 63 ? ? ? A . n A 1 65 HIS 65 64 ? ? ? A . n A 1 66 HIS 66 65 ? ? ? A . n A 1 67 HIS 67 66 ? ? ? A . n B 2 1 ALA 1 0 ? ? ? B . n B 2 2 VAL 2 1 ? ? ? B . n B 2 3 ASP 3 2 ? ? ? B . n B 2 4 ASN 4 3 3 ASN ASN B . n B 2 5 LYS 5 4 4 LYS LYS B . n B 2 6 PHE 6 5 5 PHE PHE B . n B 2 7 ASN 7 6 6 ASN ASN B . n B 2 8 LYS 8 7 7 LYS LYS B . n B 2 9 GLU 9 8 8 GLU GLU B . n B 2 10 PHE 10 9 9 PHE PHE B . n B 2 11 SER 11 10 10 SER SER B . n B 2 12 VAL 12 11 11 VAL VAL B . n B 2 13 ALA 13 12 12 ALA ALA B . n B 2 14 GLY 14 13 13 GLY GLY B . n B 2 15 ARG 15 14 14 ARG ARG B . n B 2 16 GLU 16 15 15 GLU GLU B . n B 2 17 ILE 17 16 16 ILE ILE B . n B 2 18 ILE 18 17 17 ILE ILE B . n B 2 19 THR 19 18 18 THR THR B . n B 2 20 LEU 20 19 19 LEU LEU B . n B 2 21 PRO 21 20 20 PRO PRO B . n B 2 22 ASN 22 21 21 ASN ASN B . n B 2 23 LEU 23 22 22 LEU LEU B . n B 2 24 ASN 24 23 23 ASN ASN B . n B 2 25 ASP 25 24 24 ASP ASP B . n B 2 26 PRO 26 25 25 PRO PRO B . n B 2 27 GLN 27 26 26 GLN GLN B . n B 2 28 MLY 28 27 27 MLY MLY B . n B 2 29 LYS 29 28 28 LYS LYS B . n B 2 30 ALA 30 29 29 ALA ALA B . n B 2 31 PHE 31 30 30 PHE PHE B . n B 2 32 VAL 32 31 31 VAL VAL B . n B 2 33 PHE 33 32 32 PHE PHE B . n B 2 34 SER 34 33 33 SER SER B . n B 2 35 LEU 35 34 34 LEU LEU B . n B 2 36 TRP 36 35 35 TRP TRP B . n B 2 37 ASP 37 36 36 ASP ASP B . n B 2 38 ASP 38 37 37 ASP ASP B . n B 2 39 PRO 39 38 38 PRO PRO B . n B 2 40 SER 40 39 39 SER SER B . n B 2 41 GLN 41 40 40 GLN GLN B . n B 2 42 SER 42 41 41 SER SER B . n B 2 43 ALA 43 42 42 ALA ALA B . n B 2 44 ASN 44 43 43 ASN ASN B . n B 2 45 LEU 45 44 44 LEU LEU B . n B 2 46 LEU 46 45 45 LEU LEU B . n B 2 47 ALA 47 46 46 ALA ALA B . n B 2 48 GLU 48 47 47 GLU GLU B . n B 2 49 ALA 49 48 48 ALA ALA B . n B 2 50 MLY 50 49 49 MLY MLY B . n B 2 51 MLY 51 50 50 MLY MLY B . n B 2 52 LEU 52 51 51 LEU LEU B . n B 2 53 ASN 53 52 52 ASN ASN B . n B 2 54 ASP 54 53 53 ASP ASP B . n B 2 55 ALA 55 54 54 ALA ALA B . n B 2 56 GLN 56 55 55 GLN GLN B . n B 2 57 ALA 57 56 56 ALA ALA B . n B 2 58 PRO 58 57 57 PRO PRO B . n B 2 59 LYS 59 58 ? ? ? B . n B 2 60 LEU 60 59 ? ? ? B . n B 2 61 GLU 61 60 ? ? ? B . n B 2 62 HIS 62 61 ? ? ? B . n B 2 63 HIS 63 62 ? ? ? B . n B 2 64 HIS 64 63 ? ? ? B . n B 2 65 HIS 65 64 ? ? ? B . n B 2 66 HIS 66 65 ? ? ? B . n B 2 67 HIS 67 66 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kjude@stanford.edu _pdbx_contact_author.name_first K _pdbx_contact_author.name_last Garcia _pdbx_contact_author.name_mi C _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9273-0278 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLI 1 101 101 MLI MLI B . D 4 HOH 1 101 98 HOH HOH A . D 4 HOH 2 102 108 HOH HOH A . D 4 HOH 3 103 75 HOH HOH A . D 4 HOH 4 104 132 HOH HOH A . D 4 HOH 5 105 73 HOH HOH A . D 4 HOH 6 106 176 HOH HOH A . D 4 HOH 7 107 97 HOH HOH A . D 4 HOH 8 108 58 HOH HOH A . D 4 HOH 9 109 46 HOH HOH A . D 4 HOH 10 110 22 HOH HOH A . D 4 HOH 11 111 76 HOH HOH A . D 4 HOH 12 112 129 HOH HOH A . D 4 HOH 13 113 130 HOH HOH A . D 4 HOH 14 114 21 HOH HOH A . D 4 HOH 15 115 35 HOH HOH A . D 4 HOH 16 116 53 HOH HOH A . D 4 HOH 17 117 64 HOH HOH A . D 4 HOH 18 118 136 HOH HOH A . D 4 HOH 19 119 106 HOH HOH A . D 4 HOH 20 120 146 HOH HOH A . D 4 HOH 21 121 166 HOH HOH A . D 4 HOH 22 122 10 HOH HOH A . D 4 HOH 23 123 25 HOH HOH A . D 4 HOH 24 124 72 HOH HOH A . D 4 HOH 25 125 18 HOH HOH A . D 4 HOH 26 126 66 HOH HOH A . D 4 HOH 27 127 1 HOH HOH A . D 4 HOH 28 128 3 HOH HOH A . D 4 HOH 29 129 2 HOH HOH A . D 4 HOH 30 130 84 HOH HOH A . D 4 HOH 31 131 50 HOH HOH A . D 4 HOH 32 132 17 HOH HOH A . D 4 HOH 33 133 55 HOH HOH A . D 4 HOH 34 134 175 HOH HOH A . D 4 HOH 35 135 79 HOH HOH A . D 4 HOH 36 136 45 HOH HOH A . D 4 HOH 37 137 110 HOH HOH A . D 4 HOH 38 138 36 HOH HOH A . D 4 HOH 39 139 20 HOH HOH A . D 4 HOH 40 140 31 HOH HOH A . D 4 HOH 41 141 19 HOH HOH A . D 4 HOH 42 142 127 HOH HOH A . D 4 HOH 43 143 128 HOH HOH A . D 4 HOH 44 144 149 HOH HOH A . D 4 HOH 45 145 43 HOH HOH A . D 4 HOH 46 146 4 HOH HOH A . D 4 HOH 47 147 81 HOH HOH A . D 4 HOH 48 148 11 HOH HOH A . D 4 HOH 49 149 133 HOH HOH A . D 4 HOH 50 150 147 HOH HOH A . D 4 HOH 51 151 9 HOH HOH A . D 4 HOH 52 152 40 HOH HOH A . D 4 HOH 53 153 62 HOH HOH A . D 4 HOH 54 154 7 HOH HOH A . D 4 HOH 55 155 83 HOH HOH A . D 4 HOH 56 156 38 HOH HOH A . D 4 HOH 57 157 100 HOH HOH A . D 4 HOH 58 158 111 HOH HOH A . D 4 HOH 59 159 173 HOH HOH A . D 4 HOH 60 160 171 HOH HOH A . D 4 HOH 61 161 23 HOH HOH A . D 4 HOH 62 162 12 HOH HOH A . D 4 HOH 63 163 101 HOH HOH A . D 4 HOH 64 164 82 HOH HOH A . D 4 HOH 65 165 13 HOH HOH A . D 4 HOH 66 166 80 HOH HOH A . D 4 HOH 67 167 70 HOH HOH A . D 4 HOH 68 168 148 HOH HOH A . D 4 HOH 69 169 162 HOH HOH A . D 4 HOH 70 170 152 HOH HOH A . D 4 HOH 71 171 168 HOH HOH A . D 4 HOH 72 172 153 HOH HOH A . D 4 HOH 73 173 157 HOH HOH A . D 4 HOH 74 174 94 HOH HOH A . D 4 HOH 75 175 78 HOH HOH A . D 4 HOH 76 176 116 HOH HOH A . D 4 HOH 77 177 49 HOH HOH A . D 4 HOH 78 178 125 HOH HOH A . D 4 HOH 79 179 91 HOH HOH A . D 4 HOH 80 180 117 HOH HOH A . D 4 HOH 81 181 137 HOH HOH A . D 4 HOH 82 182 57 HOH HOH A . D 4 HOH 83 183 61 HOH HOH A . D 4 HOH 84 184 142 HOH HOH A . D 4 HOH 85 185 69 HOH HOH A . D 4 HOH 86 186 86 HOH HOH A . D 4 HOH 87 187 104 HOH HOH A . D 4 HOH 88 188 115 HOH HOH A . D 4 HOH 89 189 145 HOH HOH A . D 4 HOH 90 190 51 HOH HOH A . D 4 HOH 91 191 105 HOH HOH A . D 4 HOH 92 192 102 HOH HOH A . D 4 HOH 93 193 163 HOH HOH A . E 4 HOH 1 201 121 HOH HOH B . E 4 HOH 2 202 150 HOH HOH B . E 4 HOH 3 203 28 HOH HOH B . E 4 HOH 4 204 59 HOH HOH B . E 4 HOH 5 205 71 HOH HOH B . E 4 HOH 6 206 114 HOH HOH B . E 4 HOH 7 207 103 HOH HOH B . E 4 HOH 8 208 89 HOH HOH B . E 4 HOH 9 209 15 HOH HOH B . E 4 HOH 10 210 37 HOH HOH B . E 4 HOH 11 211 32 HOH HOH B . E 4 HOH 12 212 41 HOH HOH B . E 4 HOH 13 213 92 HOH HOH B . E 4 HOH 14 214 47 HOH HOH B . E 4 HOH 15 215 30 HOH HOH B . E 4 HOH 16 216 138 HOH HOH B . E 4 HOH 17 217 174 HOH HOH B . E 4 HOH 18 218 140 HOH HOH B . E 4 HOH 19 219 24 HOH HOH B . E 4 HOH 20 220 109 HOH HOH B . E 4 HOH 21 221 85 HOH HOH B . E 4 HOH 22 222 26 HOH HOH B . E 4 HOH 23 223 123 HOH HOH B . E 4 HOH 24 224 44 HOH HOH B . E 4 HOH 25 225 172 HOH HOH B . E 4 HOH 26 226 48 HOH HOH B . E 4 HOH 27 227 42 HOH HOH B . E 4 HOH 28 228 161 HOH HOH B . E 4 HOH 29 229 113 HOH HOH B . E 4 HOH 30 230 14 HOH HOH B . E 4 HOH 31 231 56 HOH HOH B . E 4 HOH 32 232 112 HOH HOH B . E 4 HOH 33 233 6 HOH HOH B . E 4 HOH 34 234 60 HOH HOH B . E 4 HOH 35 235 164 HOH HOH B . E 4 HOH 36 236 8 HOH HOH B . E 4 HOH 37 237 119 HOH HOH B . E 4 HOH 38 238 29 HOH HOH B . E 4 HOH 39 239 77 HOH HOH B . E 4 HOH 40 240 158 HOH HOH B . E 4 HOH 41 241 34 HOH HOH B . E 4 HOH 42 242 54 HOH HOH B . E 4 HOH 43 243 156 HOH HOH B . E 4 HOH 44 244 155 HOH HOH B . E 4 HOH 45 245 124 HOH HOH B . E 4 HOH 46 246 170 HOH HOH B . E 4 HOH 47 247 131 HOH HOH B . E 4 HOH 48 248 107 HOH HOH B . E 4 HOH 49 249 88 HOH HOH B . E 4 HOH 50 250 96 HOH HOH B . E 4 HOH 51 251 63 HOH HOH B . E 4 HOH 52 252 135 HOH HOH B . E 4 HOH 53 253 122 HOH HOH B . E 4 HOH 54 254 52 HOH HOH B . E 4 HOH 55 255 90 HOH HOH B . E 4 HOH 56 256 87 HOH HOH B . E 4 HOH 57 257 134 HOH HOH B . E 4 HOH 58 258 67 HOH HOH B . E 4 HOH 59 259 39 HOH HOH B . E 4 HOH 60 260 120 HOH HOH B . E 4 HOH 61 261 154 HOH HOH B . E 4 HOH 62 262 65 HOH HOH B . E 4 HOH 63 263 169 HOH HOH B . E 4 HOH 64 264 99 HOH HOH B . E 4 HOH 65 265 151 HOH HOH B . E 4 HOH 66 266 118 HOH HOH B . E 4 HOH 67 267 93 HOH HOH B . E 4 HOH 68 268 68 HOH HOH B . E 4 HOH 69 269 5 HOH HOH B . E 4 HOH 70 270 16 HOH HOH B . E 4 HOH 71 271 144 HOH HOH B . E 4 HOH 72 272 143 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 5 A MLY 4 ? LYS 'modified residue' 2 A MLY 8 A MLY 7 ? LYS 'modified residue' 3 A MLY 50 A MLY 49 ? LYS 'modified residue' 4 A MLY 59 A MLY 58 ? LYS 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1540 ? 1 MORE -10 ? 1 'SSA (A^2)' 7240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-07-26 2 'Structure model' 1 1 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 6 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 7 # _pdbx_entry_details.entry_id 8DA7 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 144 ? ? O A HOH 172 ? ? 1.98 2 1 O B HOH 244 ? ? O B HOH 265 ? ? 2.07 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 272 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.94 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 50 ? CD ? A LYS 51 CD 2 1 Y 1 A LYS 50 ? CE ? A LYS 51 CE 3 1 Y 1 A LYS 50 ? NZ ? A LYS 51 NZ 4 1 Y 1 B ASN 3 ? CG ? B ASN 4 CG 5 1 Y 1 B ASN 3 ? OD1 ? B ASN 4 OD1 6 1 Y 1 B ASN 3 ? ND2 ? B ASN 4 ND2 7 1 Y 1 B LYS 4 ? CE ? B LYS 5 CE 8 1 Y 1 B LYS 4 ? NZ ? B LYS 5 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 59 ? A LEU 60 2 1 Y 1 A GLU 60 ? A GLU 61 3 1 Y 1 A HIS 61 ? A HIS 62 4 1 Y 1 A HIS 62 ? A HIS 63 5 1 Y 1 A HIS 63 ? A HIS 64 6 1 Y 1 A HIS 64 ? A HIS 65 7 1 Y 1 A HIS 65 ? A HIS 66 8 1 Y 1 A HIS 66 ? A HIS 67 9 1 Y 1 B ALA 0 ? B ALA 1 10 1 Y 1 B VAL 1 ? B VAL 2 11 1 Y 1 B ASP 2 ? B ASP 3 12 1 Y 1 B LYS 58 ? B LYS 59 13 1 Y 1 B LEU 59 ? B LEU 60 14 1 Y 1 B GLU 60 ? B GLU 61 15 1 Y 1 B HIS 61 ? B HIS 62 16 1 Y 1 B HIS 62 ? B HIS 63 17 1 Y 1 B HIS 63 ? B HIS 64 18 1 Y 1 B HIS 64 ? B HIS 65 19 1 Y 1 B HIS 65 ? B HIS 66 20 1 Y 1 B HIS 66 ? B HIS 67 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'The G. Harold and Leila Y. Mathers Foundation' 'United States' MF-1802-00128 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MALONATE ION' MLI 4 water HOH # _pdbx_related_exp_data_set.data_reference 10.15785/SBGRID/924 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.ordinal 1 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'isothermal titration calorimetry' ? 2 1 'gel filtration' ? 3 1 'surface plasmon resonance' ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #