HEADER PROTEIN BINDING 13-JUN-22 8DAA TITLE COEVOLVED AFFIBODY-Z DOMAIN PAIR LL2.C7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A,SPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AFFIBODY LL2.FIVK; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFIBODY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.M.JUDE,A.YANG,K.C.GARCIA REVDAT 2 09-AUG-23 8DAA 1 JRNL REVDAT 1 26-JUL-23 8DAA 0 JRNL AUTH A.YANG,K.M.JUDE,B.LAI,M.MINOT,A.M.KOCYLA,C.R.GLASSMAN, JRNL AUTH 2 D.NISHIMIYA,Y.S.KIM,S.T.REDDY,A.A.KHAN,K.C.GARCIA JRNL TITL DEPLOYING SYNTHETIC COEVOLUTION AND MACHINE LEARNING TO JRNL TITL 2 ENGINEER PROTEIN-PROTEIN INTERACTIONS. JRNL REF SCIENCE V. 381 H1720 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 37499032 JRNL DOI 10.1126/SCIENCE.ADH1720 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 17026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4800 - 4.0000 0.94 1303 145 0.2156 0.2532 REMARK 3 2 4.0000 - 3.1800 0.94 1276 142 0.2156 0.2563 REMARK 3 3 3.1800 - 2.7800 0.97 1282 142 0.2358 0.2996 REMARK 3 4 2.7800 - 2.5200 0.98 1340 150 0.2453 0.2891 REMARK 3 5 2.5200 - 2.3400 0.93 1244 137 0.2383 0.2948 REMARK 3 6 2.3400 - 2.2000 0.96 1276 142 0.2512 0.3415 REMARK 3 7 2.2000 - 2.0900 0.96 1297 145 0.2837 0.3541 REMARK 3 8 2.0900 - 2.0000 0.96 1263 141 0.3312 0.3888 REMARK 3 9 2.0000 - 1.9300 0.96 1265 141 0.3525 0.3830 REMARK 3 10 1.9300 - 1.8600 0.93 1243 139 0.3688 0.4024 REMARK 3 11 1.8600 - 1.8000 0.94 1253 139 0.4110 0.4264 REMARK 3 12 1.8000 - 1.7500 0.96 1279 142 0.4248 0.4277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.382 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1745 REMARK 3 ANGLE : 0.460 2376 REMARK 3 CHIRALITY : 0.035 270 REMARK 3 PLANARITY : 0.003 327 REMARK 3 DIHEDRAL : 14.038 630 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4083 -5.3812 39.6075 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2608 REMARK 3 T33: 0.2543 T12: -0.0352 REMARK 3 T13: -0.0115 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 4.7421 L22: 1.4839 REMARK 3 L33: 2.0560 L12: 2.5166 REMARK 3 L13: -1.2423 L23: -0.3207 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 0.1195 S13: 0.0867 REMARK 3 S21: 0.0945 S22: -0.1293 S23: -0.5311 REMARK 3 S31: 0.1234 S32: -0.3065 S33: -0.1318 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5481 -12.6009 42.2143 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.2183 REMARK 3 T33: 0.2956 T12: -0.0018 REMARK 3 T13: -0.0404 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.1967 L22: 8.1684 REMARK 3 L33: 3.1588 L12: 1.8343 REMARK 3 L13: 0.5938 L23: 0.9380 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.1433 S13: -0.2315 REMARK 3 S21: 0.6239 S22: 0.1478 S23: -0.4133 REMARK 3 S31: 0.2137 S32: 0.1155 S33: -0.1436 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3369 -15.6312 24.0559 REMARK 3 T TENSOR REMARK 3 T11: 0.6723 T22: 0.6629 REMARK 3 T33: 1.1037 T12: 0.0846 REMARK 3 T13: -0.0456 T23: -0.1750 REMARK 3 L TENSOR REMARK 3 L11: 0.0772 L22: 0.0832 REMARK 3 L33: 0.0187 L12: -0.0117 REMARK 3 L13: 0.0298 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.4693 S12: -0.0365 S13: 0.4044 REMARK 3 S21: -1.2549 S22: 0.5970 S23: -0.2621 REMARK 3 S31: -0.1242 S32: 0.6421 S33: -0.0048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9027 -9.5009 28.8542 REMARK 3 T TENSOR REMARK 3 T11: 0.4289 T22: 0.2717 REMARK 3 T33: 0.4536 T12: 0.0076 REMARK 3 T13: 0.0264 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.2815 L22: 3.1458 REMARK 3 L33: 3.5410 L12: 3.0396 REMARK 3 L13: 2.7994 L23: 1.9654 REMARK 3 S TENSOR REMARK 3 S11: 0.8193 S12: -0.2621 S13: 0.0011 REMARK 3 S21: 0.4852 S22: -0.5512 S23: 0.5087 REMARK 3 S31: 0.4116 S32: -0.5767 S33: -0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8566 0.1537 29.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.2057 REMARK 3 T33: 0.2922 T12: 0.0655 REMARK 3 T13: -0.0119 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 3.7531 L22: 2.2700 REMARK 3 L33: 3.6661 L12: 3.0148 REMARK 3 L13: -1.4662 L23: -1.0659 REMARK 3 S TENSOR REMARK 3 S11: 0.4819 S12: 0.1886 S13: 0.0437 REMARK 3 S21: 0.2702 S22: -0.1522 S23: 0.1192 REMARK 3 S31: -0.3674 S32: -0.3937 S33: -0.1327 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3670 -0.9563 20.9728 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2373 REMARK 3 T33: 0.2611 T12: 0.0544 REMARK 3 T13: 0.0077 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.5693 L22: 4.4930 REMARK 3 L33: 3.9490 L12: 3.4010 REMARK 3 L13: -0.5315 L23: -0.8801 REMARK 3 S TENSOR REMARK 3 S11: 0.2756 S12: 0.5401 S13: 0.6062 REMARK 3 S21: -0.1165 S22: -0.0739 S23: 0.3565 REMARK 3 S31: -0.2481 S32: -0.4650 S33: -0.1076 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3415 3.6059 -9.2711 REMARK 3 T TENSOR REMARK 3 T11: 0.6864 T22: 0.4172 REMARK 3 T33: 0.6629 T12: 0.0394 REMARK 3 T13: 0.0883 T23: -0.0646 REMARK 3 L TENSOR REMARK 3 L11: 0.0991 L22: 0.1711 REMARK 3 L33: 0.0526 L12: -0.0124 REMARK 3 L13: -0.0747 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: 0.3952 S13: 0.0184 REMARK 3 S21: -0.0212 S22: 0.6247 S23: 0.3068 REMARK 3 S31: -0.5556 S32: -0.1008 S33: -0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7646 -4.6899 -4.7196 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.2219 REMARK 3 T33: 0.3585 T12: 0.0137 REMARK 3 T13: -0.0095 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.0113 L22: 1.9020 REMARK 3 L33: 1.1437 L12: -1.2372 REMARK 3 L13: -0.0294 L23: 0.6911 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.1246 S13: 0.2801 REMARK 3 S21: 0.3661 S22: 0.1114 S23: 0.5126 REMARK 3 S31: -0.0332 S32: -0.0990 S33: 0.0382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 24 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1969 -10.9832 -7.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.1788 REMARK 3 T33: 0.2934 T12: 0.0131 REMARK 3 T13: -0.0333 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.4458 L22: 6.8725 REMARK 3 L33: 4.5997 L12: -1.7388 REMARK 3 L13: -0.8117 L23: 0.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.1895 S12: 0.0399 S13: -0.2368 REMARK 3 S21: -0.0221 S22: 0.1768 S23: 0.2879 REMARK 3 S31: 0.1813 S32: 0.0064 S33: -0.0908 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 0 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7006 -14.3752 9.5833 REMARK 3 T TENSOR REMARK 3 T11: 0.5851 T22: 0.3162 REMARK 3 T33: 1.2637 T12: 0.0970 REMARK 3 T13: -0.1348 T23: -0.1516 REMARK 3 L TENSOR REMARK 3 L11: 2.8634 L22: 5.2125 REMARK 3 L33: 1.9996 L12: -2.9113 REMARK 3 L13: -1.3741 L23: -3.4829 REMARK 3 S TENSOR REMARK 3 S11: 0.2560 S12: 0.2393 S13: -0.0885 REMARK 3 S21: 0.6146 S22: 0.6235 S23: 0.7931 REMARK 3 S31: -0.4980 S32: -1.1734 S33: 0.3465 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 5 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5548 -8.4566 5.2737 REMARK 3 T TENSOR REMARK 3 T11: 0.3984 T22: 0.2846 REMARK 3 T33: 0.3599 T12: 0.0103 REMARK 3 T13: -0.0329 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.9502 L22: 2.5924 REMARK 3 L33: 2.2329 L12: -2.3779 REMARK 3 L13: -0.9760 L23: -0.2557 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: 0.3043 S13: -0.5275 REMARK 3 S21: 0.1191 S22: 0.0838 S23: 0.4031 REMARK 3 S31: 0.6825 S32: 0.5488 S33: -0.1141 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 18 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9430 1.6957 4.5461 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.1438 REMARK 3 T33: 0.3030 T12: -0.0284 REMARK 3 T13: -0.0297 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 5.3232 L22: 0.8464 REMARK 3 L33: 3.1317 L12: -1.6152 REMARK 3 L13: -0.2781 L23: -0.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.3148 S12: 0.0455 S13: -0.1318 REMARK 3 S21: -0.1850 S22: -0.1242 S23: 0.1632 REMARK 3 S31: -0.3448 S32: 0.0418 S33: -0.0566 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2962 0.4844 13.0221 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.1997 REMARK 3 T33: 0.2525 T12: -0.0492 REMARK 3 T13: -0.0325 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 7.8481 L22: 2.6138 REMARK 3 L33: 2.2132 L12: -2.1682 REMARK 3 L13: -2.6886 L23: 1.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.9691 S13: 0.0527 REMARK 3 S21: 0.1955 S22: 0.1077 S23: -0.0492 REMARK 3 S31: 0.0872 S32: 0.1031 S33: -0.0623 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 23.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.21090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M AMMONIUM SULFATE, 100 MM HEPES REMARK 280 PH 7.0 CRYOPROTECTED WITH SODIUM MALONATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.79400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.51150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.79400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.51150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 109 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 57 REMARK 465 LYS A 58 REMARK 465 LEU A 59 REMARK 465 GLU A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 LYS B 58 REMARK 465 LEU B 59 REMARK 465 GLU B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 LYS C 58 REMARK 465 LEU C 59 REMARK 465 GLU C 60 REMARK 465 HIS C 61 REMARK 465 HIS C 62 REMARK 465 HIS C 63 REMARK 465 HIS C 64 REMARK 465 HIS C 65 REMARK 465 HIS C 66 REMARK 465 LYS D 58 REMARK 465 LEU D 59 REMARK 465 GLU D 60 REMARK 465 HIS D 61 REMARK 465 HIS D 62 REMARK 465 HIS D 63 REMARK 465 HIS D 64 REMARK 465 HIS D 65 REMARK 465 HIS D 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 PHE B 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 6 CG OD1 ND2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 ASP D 2 CG OD1 OD2 REMARK 470 ASN D 3 CG OD1 ND2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 PHE D 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 88.10 -151.98 REMARK 500 ASN D 3 -17.42 64.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DAA A 2 58 UNP P38507 SPA_STAAU 213 269 DBREF 8DAA B 0 66 PDB 8DAA 8DAA 0 66 DBREF 8DAA C 2 58 UNP P38507 SPA_STAAU 213 269 DBREF 8DAA D 0 66 PDB 8DAA 8DAA 0 66 SEQADV 8DAA ALA A 0 UNP P38507 EXPRESSION TAG SEQADV 8DAA VAL A 1 UNP P38507 EXPRESSION TAG SEQADV 8DAA LEU A 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DAA VAL A 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DAA ALA A 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DAA PHE A 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DAA LEU A 59 UNP P38507 EXPRESSION TAG SEQADV 8DAA GLU A 60 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 61 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 62 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 63 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 64 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 65 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS A 66 UNP P38507 EXPRESSION TAG SEQADV 8DAA ALA C 0 UNP P38507 EXPRESSION TAG SEQADV 8DAA VAL C 1 UNP P38507 EXPRESSION TAG SEQADV 8DAA LEU C 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DAA VAL C 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DAA ALA C 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DAA PHE C 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DAA LEU C 59 UNP P38507 EXPRESSION TAG SEQADV 8DAA GLU C 60 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 61 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 62 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 63 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 64 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 65 UNP P38507 EXPRESSION TAG SEQADV 8DAA HIS C 66 UNP P38507 EXPRESSION TAG SEQRES 1 A 67 ALA VAL ASP ASN LYS PHE ASN LYS GLU LEU GLN ASN ALA SEQRES 2 A 67 VAL TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 A 67 GLN ARG ASN ALA PHE PHE GLN SER LEU LYS ASP ASP PRO SEQRES 4 A 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 A 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 A 67 HIS HIS SEQRES 1 B 67 ALA VAL ASP ASN LYS PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 B 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 B 67 GLN MLY LYS ALA PHE VAL LYS SER LEU TRP ASP ASP PRO SEQRES 4 B 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 B 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 B 67 HIS HIS SEQRES 1 C 67 ALA VAL ASP ASN LYS PHE ASN LYS GLU LEU GLN ASN ALA SEQRES 2 C 67 VAL TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 C 67 GLN ARG ASN ALA PHE PHE GLN SER LEU LYS ASP ASP PRO SEQRES 4 C 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 C 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 C 67 HIS HIS SEQRES 1 D 67 ALA VAL ASP ASN LYS PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 D 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 D 67 GLN MLY LYS ALA PHE VAL LYS SER LEU TRP ASP ASP PRO SEQRES 4 D 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 D 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 D 67 HIS HIS HET MLY B 27 11 HET MLY D 27 11 HET MLI A 101 7 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MLI MALONATE ION FORMUL 2 MLY 2(C8 H18 N2 O2) FORMUL 5 MLI C3 H2 O4 2- FORMUL 6 HOH *33(H2 O) HELIX 1 AA1 PHE A 5 LEU A 19 1 15 HELIX 2 AA2 ASN A 23 ASP A 37 1 15 HELIX 3 AA3 GLN A 40 GLN A 55 1 16 HELIX 4 AA4 LYS B 4 THR B 18 1 15 HELIX 5 AA5 ASN B 23 ASP B 37 1 15 HELIX 6 AA6 GLN B 40 GLN B 55 1 16 HELIX 7 AA7 PHE C 5 LEU C 19 1 15 HELIX 8 AA8 ASN C 23 ASP C 37 1 15 HELIX 9 AA9 GLN C 40 GLN C 55 1 16 HELIX 10 AB1 LYS D 4 THR D 18 1 15 HELIX 11 AB2 ASN D 23 ASP D 37 1 15 HELIX 12 AB3 GLN D 40 GLN D 55 1 16 LINK C GLN B 26 N MLY B 27 1555 1555 1.33 LINK C MLY B 27 N LYS B 28 1555 1555 1.33 LINK C GLN D 26 N MLY D 27 1555 1555 1.33 LINK C MLY D 27 N LYS D 28 1555 1555 1.33 CRYST1 49.588 53.023 68.662 90.00 98.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020166 0.000000 0.002974 0.00000 SCALE2 0.000000 0.018860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014722 0.00000