HEADER IMMUNE SYSTEM 13-JUN-22 8DAO TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE STEM FUSION PEPTIDE IN COMPLEX TITLE 2 WITH NEUTRALIZING ANTIBODY COV44-79 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COV44-79 HEAVY CHAIN VARIABLE DOMAIN; COMPND 3 CHAIN: C, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COV44-79 LIGHT CHAIN VARIABLE DOMAIN; COMPND 7 CHAIN: D, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: COV44-79 HEAVY CHAIN CONSTANT DOMAIN; COMPND 11 CHAIN: E, G; COMPND 12 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN, IMMUNOGLOBULIN GAMMA-1 COMPND 13 HEAVY CHAIN NIE; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: COV44-79 LIGHT CHAIN CONSTANT DOMAIN; COMPND 17 CHAIN: F, H; COMPND 18 SYNONYM: IMMUNOGLOBULIN KAPPA CONSTANT, IG KAPPA CHAIN C REGION,IG COMPND 19 KAPPA CHAIN C REGION AG,IG KAPPA CHAIN C REGION CUM,IG KAPPA CHAIN C COMPND 20 REGION EU,IG KAPPA CHAIN C REGION OU,IG KAPPA CHAIN C REGION ROY,IG COMPND 21 KAPPA CHAIN C REGION TI; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: SPIKE PROTEIN S2 FUSION PEPTIDE; COMPND 25 CHAIN: I, J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: IGKC; SOURCE 27 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 28 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 30 MOL_ID: 5; SOURCE 31 SYNTHETIC: YES; SOURCE 32 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 33 2; SOURCE 34 ORGANISM_TAXID: 2697049 KEYWDS SARS-COV-2, CORONAVIRUS, ANTIBODY, FUSION PEPTIDE, NEUTRALIZING KEYWDS 2 ANTIBODY, COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.H.LIN,C.C.D.LEE,M.YUAN,I.A.WILSON REVDAT 4 18-OCT-23 8DAO 1 REMARK REVDAT 3 24-AUG-22 8DAO 1 JRNL REVDAT 2 03-AUG-22 8DAO 1 JRNL REMARK REVDAT 1 27-JUL-22 8DAO 0 JRNL AUTH C.DACON,C.TUCKER,L.PENG,C.D.LEE,T.H.LIN,M.YUAN,Y.CONG, JRNL AUTH 2 L.WANG,L.PURSER,J.K.WILLIAMS,C.W.PYO,I.KOSIK,Z.HU,M.ZHAO, JRNL AUTH 3 D.MOHAN,A.J.R.COOPER,M.PETERSON,J.SKINNER,S.DIXIT,E.KOLLINS, JRNL AUTH 4 L.HUZELLA,D.PERRY,R.BYRUM,S.LEMBIRIK,D.DRAWBAUGH,B.EATON, JRNL AUTH 5 Y.ZHANG,E.S.YANG,M.CHEN,K.LEUNG,R.S.WEINBERG,A.PEGU, JRNL AUTH 6 D.E.GERAGHTY,E.DAVIDSON,I.DOUAGI,S.MOIR,J.W.YEWDELL, JRNL AUTH 7 C.SCHMALJOHN,P.D.CROMPTON,M.R.HOLBROOK,D.NEMAZEE, JRNL AUTH 8 J.R.MASCOLA,I.A.WILSON,J.TAN JRNL TITL BROADLY NEUTRALIZING ANTIBODIES TARGET THE CORONAVIRUS JRNL TITL 2 FUSION PEPTIDE. JRNL REF SCIENCE V. 377 728 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35857439 JRNL DOI 10.1126/SCIENCE.ABQ3773 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8800 - 6.0200 1.00 3066 164 0.2276 0.2372 REMARK 3 2 6.0200 - 4.7800 1.00 2875 161 0.1885 0.2552 REMARK 3 3 4.7800 - 4.1800 1.00 2867 141 0.1788 0.2033 REMARK 3 4 4.1800 - 3.7900 1.00 2850 144 0.2153 0.2581 REMARK 3 5 3.7900 - 3.5200 1.00 2834 129 0.2515 0.3886 REMARK 3 6 3.5200 - 3.3200 1.00 2793 152 0.2540 0.3248 REMARK 3 7 3.3100 - 3.1500 0.99 2754 149 0.2951 0.3503 REMARK 3 8 3.1500 - 3.0100 0.98 2741 161 0.3115 0.4284 REMARK 3 9 3.0100 - 2.9000 0.96 2664 125 0.2985 0.3340 REMARK 3 10 2.9000 - 2.8000 0.93 2596 131 0.3004 0.3571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 1.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8D6Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.01 M NICKEL (II) REMARK 280 CHLORIDE, AND 20% PEG MONOMETHYL ETHER 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.96950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.48475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.45425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.96950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 172.45425 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.48475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS F 214 REMARK 465 PRO I 809 REMARK 465 SER I 810 REMARK 465 LYS I 811 REMARK 465 CYS H 214 REMARK 465 PRO J 809 REMARK 465 SER J 810 REMARK 465 LYS J 811 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 214 CG CD CE NZ REMARK 470 LYS G 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 48 -61.71 -107.79 REMARK 500 THR C 105 -164.11 -128.16 REMARK 500 GLU C 106 79.72 63.07 REMARK 500 ALA C 112 33.06 -96.33 REMARK 500 SER D 30 -131.59 59.31 REMARK 500 ALA D 50 17.10 57.54 REMARK 500 ALA D 51 -9.69 71.31 REMARK 500 SER D 76 -162.34 -76.75 REMARK 500 SER D 93 36.54 -97.54 REMARK 500 THR E 116 121.46 -39.57 REMARK 500 SER E 130 -153.60 63.74 REMARK 500 THR E 131 33.86 -97.22 REMARK 500 SER E 132 -99.58 58.24 REMARK 500 ASP E 144 65.21 60.02 REMARK 500 VAL A 48 -61.97 -104.09 REMARK 500 THR A 105 -164.05 -128.55 REMARK 500 GLU A 106 78.12 62.88 REMARK 500 ALA A 112 34.98 -97.63 REMARK 500 SER B 30 -134.07 61.77 REMARK 500 ALA B 50 16.00 56.67 REMARK 500 ALA B 51 -10.06 71.54 REMARK 500 SER B 52 -15.84 -140.14 REMARK 500 SER B 76 -163.25 -75.51 REMARK 500 SER B 93 32.38 -95.03 REMARK 500 SER G 127 -158.77 -150.84 REMARK 500 ASP G 144 66.23 60.13 REMARK 500 PRO G 202 -8.33 -55.45 REMARK 500 ASN G 204 16.51 57.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8D36 RELATED DB: PDB REMARK 900 RELATED ID: 8D6Z RELATED DB: PDB DBREF 8DAO C 1 126 PDB 8DAO 8DAO 1 126 DBREF 8DAO D 1 109 PDB 8DAO 8DAO 1 109 DBREF 8DAO E 114 216 UNP P0DOX5 IGG1_HUMAN 120 222 DBREF 8DAO F 108 214 UNP P01834 IGKC_HUMAN 1 107 DBREF 8DAO I 809 823 UNP P0DTC2 SPIKE_SARS2 809 823 DBREF 8DAO A 1 126 PDB 8DAO 8DAO 1 126 DBREF 8DAO B 1 109 PDB 8DAO 8DAO 1 109 DBREF 8DAO G 114 216 UNP P0DOX5 IGG1_HUMAN 120 222 DBREF 8DAO H 108 214 UNP P01834 IGKC_HUMAN 1 107 DBREF 8DAO J 809 823 UNP P0DTC2 SPIKE_SARS2 809 823 SEQRES 1 C 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 C 126 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 126 LEU THR PHE SER GLY TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 C 126 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 C 126 ARG ASP ALA ARG ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 C 126 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS LYS THR SEQRES 7 C 126 VAL TYR LEU GLU MET ASN SER LEU ARG VAL GLU ASP THR SEQRES 8 C 126 ALA VAL TYR TYR CYS ALA ILE LEU ILE ILE PRO GLY ILE SEQRES 9 C 126 THR GLU PRO GLY SER PRO ASP ALA LEU ASP ILE TRP GLY SEQRES 10 C 126 GLN GLY THR MET VAL SER VAL SER SER SEQRES 1 D 109 ASP ILE GLN MET THR GLN SER PRO SER SER MET SER ALA SEQRES 2 D 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 109 GLN ASP ILE SER LYS TRP LEU ALA TRP TYR GLN GLN ARG SEQRES 4 D 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 D 109 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 109 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN ALA SEQRES 8 D 109 SER SER PHE PRO TRP SER ILE THR PHE GLY GLN GLY THR SEQRES 9 D 109 ARG LEU GLU ILE ARG SEQRES 1 E 103 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 2 E 103 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 3 E 103 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 4 E 103 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 5 E 103 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 6 E 103 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 7 E 103 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 8 E 103 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 F 107 ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SEQRES 2 F 107 SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL SEQRES 3 F 107 CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL SEQRES 4 F 107 GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER SEQRES 5 F 107 GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR SEQRES 6 F 107 TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP SEQRES 7 F 107 TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS SEQRES 8 F 107 GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG SEQRES 9 F 107 GLY GLU CYS SEQRES 1 I 15 PRO SER LYS PRO SER LYS ARG SER PHE ILE GLU ASP LEU SEQRES 2 I 15 LEU PHE SEQRES 1 A 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 A 126 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 126 LEU THR PHE SER GLY TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 A 126 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 A 126 ARG ASP ALA ARG ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 126 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS LYS THR SEQRES 7 A 126 VAL TYR LEU GLU MET ASN SER LEU ARG VAL GLU ASP THR SEQRES 8 A 126 ALA VAL TYR TYR CYS ALA ILE LEU ILE ILE PRO GLY ILE SEQRES 9 A 126 THR GLU PRO GLY SER PRO ASP ALA LEU ASP ILE TRP GLY SEQRES 10 A 126 GLN GLY THR MET VAL SER VAL SER SER SEQRES 1 B 109 ASP ILE GLN MET THR GLN SER PRO SER SER MET SER ALA SEQRES 2 B 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 109 GLN ASP ILE SER LYS TRP LEU ALA TRP TYR GLN GLN ARG SEQRES 4 B 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 B 109 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 109 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN ALA SEQRES 8 B 109 SER SER PHE PRO TRP SER ILE THR PHE GLY GLN GLY THR SEQRES 9 B 109 ARG LEU GLU ILE ARG SEQRES 1 G 103 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 2 G 103 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 3 G 103 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 4 G 103 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 5 G 103 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 6 G 103 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 7 G 103 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 8 G 103 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 H 107 ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SEQRES 2 H 107 SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL SEQRES 3 H 107 CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL SEQRES 4 H 107 GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER SEQRES 5 H 107 GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR SEQRES 6 H 107 TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP SEQRES 7 H 107 TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS SEQRES 8 H 107 GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG SEQRES 9 H 107 GLY GLU CYS SEQRES 1 J 15 PRO SER LYS PRO SER LYS ARG SER PHE ILE GLU ASP LEU SEQRES 2 J 15 LEU PHE HELIX 1 AA1 THR C 28 TYR C 32 5 5 HELIX 2 AA2 ASP C 62 LYS C 65 5 4 HELIX 3 AA3 ARG C 87 THR C 91 5 5 HELIX 4 AA4 GLN D 79 PHE D 83 5 5 HELIX 5 AA5 SER E 156 ALA E 158 5 3 HELIX 6 AA6 LYS E 201 ASN E 204 5 4 HELIX 7 AA7 SER F 121 LYS F 126 1 6 HELIX 8 AA8 LYS F 183 LYS F 188 1 6 HELIX 9 AA9 SER I 813 PHE I 823 1 11 HELIX 10 AB1 THR A 28 TYR A 32 5 5 HELIX 11 AB2 ASP A 62 LYS A 65 5 4 HELIX 12 AB3 ARG A 87 THR A 91 5 5 HELIX 13 AB4 GLN B 79 PHE B 83 5 5 HELIX 14 AB5 LYS G 201 ASN G 204 5 4 HELIX 15 AB6 SER H 121 LYS H 126 1 6 HELIX 16 AB7 LYS H 183 LYS H 188 1 6 HELIX 17 AB8 SER J 813 PHE J 823 1 11 SHEET 1 AA1 4 GLN C 3 SER C 7 0 SHEET 2 AA1 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AA1 4 THR C 78 MET C 83 -1 O LEU C 81 N LEU C 20 SHEET 4 AA1 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLU C 82 SHEET 1 AA2 6 GLY C 10 VAL C 12 0 SHEET 2 AA2 6 THR C 120 VAL C 124 1 O SER C 123 N GLY C 10 SHEET 3 AA2 6 ALA C 92 ILE C 98 -1 N TYR C 94 O THR C 120 SHEET 4 AA2 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA2 6 LEU C 45 ILE C 51 -1 O VAL C 48 N TRP C 36 SHEET 6 AA2 6 LYS C 58 TYR C 60 -1 O TYR C 59 N VAL C 50 SHEET 1 AA3 4 GLY C 10 VAL C 12 0 SHEET 2 AA3 4 THR C 120 VAL C 124 1 O SER C 123 N GLY C 10 SHEET 3 AA3 4 ALA C 92 ILE C 98 -1 N TYR C 94 O THR C 120 SHEET 4 AA3 4 ILE C 115 TRP C 116 -1 O ILE C 115 N ILE C 98 SHEET 1 AA4 4 MET D 4 SER D 7 0 SHEET 2 AA4 4 VAL D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AA4 4 ASP D 70 ILE D 75 -1 O LEU D 73 N ILE D 21 SHEET 4 AA4 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AA5 6 SER D 10 ALA D 13 0 SHEET 2 AA5 6 THR D 104 ILE D 108 1 O GLU D 107 N MET D 11 SHEET 3 AA5 6 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 104 SHEET 4 AA5 6 LEU D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AA5 6 LYS D 45 TYR D 49 -1 O LYS D 45 N GLN D 37 SHEET 6 AA5 6 SER D 53 LEU D 54 -1 O SER D 53 N TYR D 49 SHEET 1 AA6 4 SER D 10 ALA D 13 0 SHEET 2 AA6 4 THR D 104 ILE D 108 1 O GLU D 107 N MET D 11 SHEET 3 AA6 4 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 104 SHEET 4 AA6 4 THR D 99 PHE D 100 -1 O THR D 99 N GLN D 90 SHEET 1 AA7 4 SER E 120 LEU E 124 0 SHEET 2 AA7 4 THR E 135 TYR E 145 -1 O LEU E 141 N PHE E 122 SHEET 3 AA7 4 TYR E 176 PRO E 185 -1 O LEU E 178 N VAL E 142 SHEET 4 AA7 4 VAL E 163 THR E 165 -1 N HIS E 164 O VAL E 181 SHEET 1 AA8 4 SER E 120 LEU E 124 0 SHEET 2 AA8 4 THR E 135 TYR E 145 -1 O LEU E 141 N PHE E 122 SHEET 3 AA8 4 TYR E 176 PRO E 185 -1 O LEU E 178 N VAL E 142 SHEET 4 AA8 4 VAL E 169 LEU E 170 -1 N VAL E 169 O SER E 177 SHEET 1 AA9 3 THR E 151 TRP E 154 0 SHEET 2 AA9 3 TYR E 194 HIS E 200 -1 O ASN E 197 N SER E 153 SHEET 3 AA9 3 THR E 205 VAL E 211 -1 O VAL E 207 N VAL E 198 SHEET 1 AB1 4 SER F 114 PHE F 118 0 SHEET 2 AB1 4 THR F 129 PHE F 139 -1 O LEU F 135 N PHE F 116 SHEET 3 AB1 4 TYR F 173 SER F 182 -1 O LEU F 179 N VAL F 132 SHEET 4 AB1 4 SER F 159 VAL F 163 -1 N GLN F 160 O THR F 178 SHEET 1 AB2 4 ALA F 153 LEU F 154 0 SHEET 2 AB2 4 LYS F 145 VAL F 150 -1 N VAL F 150 O ALA F 153 SHEET 3 AB2 4 VAL F 191 THR F 197 -1 O GLU F 195 N GLN F 147 SHEET 4 AB2 4 VAL F 205 ASN F 210 -1 O VAL F 205 N VAL F 196 SHEET 1 AB3 4 GLN A 3 SER A 7 0 SHEET 2 AB3 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AB3 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AB3 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLU A 82 SHEET 1 AB4 6 VAL A 11 VAL A 12 0 SHEET 2 AB4 6 THR A 120 VAL A 124 1 O SER A 123 N VAL A 12 SHEET 3 AB4 6 ALA A 92 ILE A 98 -1 N TYR A 94 O THR A 120 SHEET 4 AB4 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AB4 6 LEU A 45 ILE A 51 -1 O VAL A 48 N TRP A 36 SHEET 6 AB4 6 LYS A 58 TYR A 60 -1 O TYR A 59 N VAL A 50 SHEET 1 AB5 4 VAL A 11 VAL A 12 0 SHEET 2 AB5 4 THR A 120 VAL A 124 1 O SER A 123 N VAL A 12 SHEET 3 AB5 4 ALA A 92 ILE A 98 -1 N TYR A 94 O THR A 120 SHEET 4 AB5 4 ILE A 115 TRP A 116 -1 O ILE A 115 N ILE A 98 SHEET 1 AB6 4 MET B 4 SER B 7 0 SHEET 2 AB6 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AB6 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AB6 4 PHE B 62 SER B 67 -1 N SER B 65 O THR B 72 SHEET 1 AB7 6 SER B 10 ALA B 13 0 SHEET 2 AB7 6 THR B 104 ILE B 108 1 O ARG B 105 N MET B 11 SHEET 3 AB7 6 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 104 SHEET 4 AB7 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AB7 6 LYS B 45 TYR B 49 -1 O ILE B 48 N TRP B 35 SHEET 6 AB7 6 SER B 53 LEU B 54 -1 O SER B 53 N TYR B 49 SHEET 1 AB8 4 SER B 10 ALA B 13 0 SHEET 2 AB8 4 THR B 104 ILE B 108 1 O ARG B 105 N MET B 11 SHEET 3 AB8 4 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 104 SHEET 4 AB8 4 THR B 99 PHE B 100 -1 O THR B 99 N GLN B 90 SHEET 1 AB9 4 SER G 120 LEU G 124 0 SHEET 2 AB9 4 THR G 135 TYR G 145 -1 O GLY G 139 N LEU G 124 SHEET 3 AB9 4 TYR G 176 PRO G 185 -1 O LEU G 178 N VAL G 142 SHEET 4 AB9 4 VAL G 163 THR G 165 -1 N HIS G 164 O VAL G 181 SHEET 1 AC1 4 THR G 131 SER G 132 0 SHEET 2 AC1 4 THR G 135 TYR G 145 -1 O THR G 135 N SER G 132 SHEET 3 AC1 4 TYR G 176 PRO G 185 -1 O LEU G 178 N VAL G 142 SHEET 4 AC1 4 VAL G 169 LEU G 170 -1 N VAL G 169 O SER G 177 SHEET 1 AC2 3 THR G 151 TRP G 154 0 SHEET 2 AC2 3 ILE G 195 HIS G 200 -1 O ASN G 197 N SER G 153 SHEET 3 AC2 3 THR G 205 LYS G 210 -1 O VAL G 207 N VAL G 198 SHEET 1 AC3 4 SER H 114 PHE H 118 0 SHEET 2 AC3 4 THR H 129 PHE H 139 -1 O VAL H 133 N PHE H 118 SHEET 3 AC3 4 TYR H 173 SER H 182 -1 O LEU H 179 N VAL H 132 SHEET 4 AC3 4 SER H 159 VAL H 163 -1 N GLN H 160 O THR H 178 SHEET 1 AC4 3 LYS H 145 VAL H 150 0 SHEET 2 AC4 3 VAL H 191 THR H 197 -1 O GLU H 195 N GLN H 147 SHEET 3 AC4 3 VAL H 205 ASN H 210 -1 O VAL H 205 N VAL H 196 SSBOND 1 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 2 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 3 CYS E 140 CYS E 196 1555 1555 2.03 SSBOND 4 CYS F 134 CYS F 194 1555 1555 2.03 SSBOND 5 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 6 CYS G 140 CYS G 196 1555 1555 2.04 SSBOND 7 CYS H 134 CYS H 194 1555 1555 2.03 CISPEP 1 SER D 7 PRO D 8 0 -1.64 CISPEP 2 PHE E 146 PRO E 147 0 -7.34 CISPEP 3 GLU E 148 PRO E 149 0 1.08 CISPEP 4 TYR F 140 PRO F 141 0 2.34 CISPEP 5 SER B 7 PRO B 8 0 -3.12 CISPEP 6 PHE G 146 PRO G 147 0 -4.49 CISPEP 7 GLU G 148 PRO G 149 0 -5.33 CISPEP 8 TYR H 140 PRO H 141 0 6.07 CRYST1 100.368 100.368 229.939 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009963 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004349 0.00000