HEADER DNA 13-JUN-22 8DAP TITLE [GA/TC] SELF-ASSEMBLED 3D DNA TENSEGRITY TRIANGLE WITH 24 BP ARM TITLE 2 LENGTH FORMING A TRIGONAL HEXAGON COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP* COMPND 4 AP*G)-3'); COMPND 5 CHAIN: E, A, I; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*AP*GP*GP*C)-3'); COMPND 10 CHAIN: H, C, D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*G)- COMPND 15 3'); COMPND 16 CHAIN: B; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SYNTHETIC CONSTRUCT, SELF-ASSEMBLY, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,Y.P.OHAYON,N.C.SEEMAN,C.MAO,R.SHA REVDAT 1 25-JAN-23 8DAP 0 JRNL AUTH B.LU,S.VECCHIONI,Y.P.OHAYON,K.WOLOSZYN,T.MARKUS,C.MAO, JRNL AUTH 2 N.C.SEEMAN,J.W.CANARY,R.SHA JRNL TITL HIGHLY SYMMETRIC, SELF-ASSEMBLING 3D DNA CRYSTALS WITH CUBIC JRNL TITL 2 AND TRIGONAL LATTICES. JRNL REF SMALL V. 19 05830 2023 JRNL REFN ESSN 1613-6829 JRNL PMID 36408817 JRNL DOI 10.1002/SMLL.202205830 REMARK 2 REMARK 2 RESOLUTION. 6.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 3619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.1300 - 6.4700 0.90 3419 200 0.1403 0.1734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 546.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 600.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3271 REMARK 3 ANGLE : 1.111 5023 REMARK 3 CHIRALITY : 0.073 570 REMARK 3 PLANARITY : 0.005 144 REMARK 3 DIHEDRAL : 41.796 1401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN E AND RESID 101:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.323 -19.726 7.656 REMARK 3 T TENSOR REMARK 3 T11: 6.0988 T22: 3.9871 REMARK 3 T33: 5.7996 T12: -0.7443 REMARK 3 T13: 0.4354 T23: -1.1378 REMARK 3 L TENSOR REMARK 3 L11: 9.2920 L22: 5.5760 REMARK 3 L33: 5.6374 L12: 0.2522 REMARK 3 L13: -0.4963 L23: 2.8739 REMARK 3 S TENSOR REMARK 3 S11: -3.5606 S12: -2.5577 S13: 0.8475 REMARK 3 S21: -3.4196 S22: -1.6502 S23: -7.6015 REMARK 3 S31: 5.6381 S32: -1.3749 S33: 3.5236 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 200:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.426 1.782 -11.957 REMARK 3 T TENSOR REMARK 3 T11: 5.5023 T22: 4.8971 REMARK 3 T33: 7.1726 T12: 0.6221 REMARK 3 T13: 0.2078 T23: 2.3643 REMARK 3 L TENSOR REMARK 3 L11: 0.5151 L22: 9.7157 REMARK 3 L33: 3.1811 L12: 0.9399 REMARK 3 L13: -1.6598 L23: 10.3104 REMARK 3 S TENSOR REMARK 3 S11: -2.8741 S12: 11.2193 S13: 8.2159 REMARK 3 S21: 4.8778 S22: 2.5478 S23: 4.8826 REMARK 3 S31: 2.0370 S32: -6.4773 S33: -0.9359 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 209:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.856 5.941 -8.174 REMARK 3 T TENSOR REMARK 3 T11: 5.9413 T22: 9.1566 REMARK 3 T33: 5.1300 T12: -1.2487 REMARK 3 T13: 2.1703 T23: 1.7797 REMARK 3 L TENSOR REMARK 3 L11: 5.1649 L22: 7.7173 REMARK 3 L33: 5.2442 L12: 2.9718 REMARK 3 L13: -1.8386 L23: -1.8256 REMARK 3 S TENSOR REMARK 3 S11: -4.4972 S12: 2.5251 S13: -3.3782 REMARK 3 S21: -4.1105 S22: 6.7433 S23: 5.5372 REMARK 3 S31: 0.7918 S32: 10.4876 S33: -0.1701 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.873 -41.655 -9.790 REMARK 3 T TENSOR REMARK 3 T11: 6.1378 T22: 3.1008 REMARK 3 T33: 3.2001 T12: -0.5956 REMARK 3 T13: -0.0907 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 1.6305 L22: 14.7108 REMARK 3 L33: 9.0783 L12: -5.1277 REMARK 3 L13: 1.7135 L23: -7.3398 REMARK 3 S TENSOR REMARK 3 S11: 0.3296 S12: -2.2203 S13: -0.3744 REMARK 3 S21: -0.9994 S22: -0.3966 S23: -0.1360 REMARK 3 S31: 1.2669 S32: 1.0780 S33: 1.2836 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 101:104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.514 -36.686 -13.143 REMARK 3 T TENSOR REMARK 3 T11: 5.6369 T22: 4.4142 REMARK 3 T33: 3.7541 T12: -0.1885 REMARK 3 T13: -0.0684 T23: -1.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.1485 L22: 8.6371 REMARK 3 L33: 2.1252 L12: 6.4155 REMARK 3 L13: 9.9193 L23: 2.3163 REMARK 3 S TENSOR REMARK 3 S11: 2.9147 S12: 3.8642 S13: -3.0519 REMARK 3 S21: 4.1693 S22: -1.5665 S23: -0.8549 REMARK 3 S31: -4.2863 S32: -0.1512 S33: -2.8692 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 105:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.021 -17.136 -7.922 REMARK 3 T TENSOR REMARK 3 T11: 6.8456 T22: 2.8222 REMARK 3 T33: 4.9995 T12: 0.2407 REMARK 3 T13: 2.2648 T23: 0.3112 REMARK 3 L TENSOR REMARK 3 L11: 6.9098 L22: 2.2053 REMARK 3 L33: -0.5947 L12: -3.7386 REMARK 3 L13: -0.3036 L23: -1.1392 REMARK 3 S TENSOR REMARK 3 S11: 0.1657 S12: 0.8489 S13: -2.2146 REMARK 3 S21: 2.8297 S22: -0.9396 S23: 4.0853 REMARK 3 S31: -2.2794 S32: -0.8251 S33: 0.7649 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 119:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.585 -38.762 -1.669 REMARK 3 T TENSOR REMARK 3 T11: 6.8225 T22: 3.7017 REMARK 3 T33: 4.8814 T12: -0.4106 REMARK 3 T13: -1.2438 T23: 0.2350 REMARK 3 L TENSOR REMARK 3 L11: 1.9558 L22: 1.9484 REMARK 3 L33: 2.0471 L12: 2.0086 REMARK 3 L13: 1.2298 L23: 1.8899 REMARK 3 S TENSOR REMARK 3 S11: 10.2107 S12: -1.4417 S13: -3.0727 REMARK 3 S21: -0.0111 S22: -7.3077 S23: 0.2816 REMARK 3 S31: 0.5856 S32: 3.8358 S33: -3.8420 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 200:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.641 -39.594 -26.062 REMARK 3 T TENSOR REMARK 3 T11: 8.0582 T22: 5.1552 REMARK 3 T33: 5.2513 T12: 2.5819 REMARK 3 T13: 0.3329 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 4.8375 L22: 8.8119 REMARK 3 L33: 3.2907 L12: 3.9912 REMARK 3 L13: -7.3908 L23: -2.8637 REMARK 3 S TENSOR REMARK 3 S11: 2.7953 S12: 0.1798 S13: -7.1871 REMARK 3 S21: -2.6897 S22: -1.9293 S23: 1.8767 REMARK 3 S31: 4.2772 S32: -1.5077 S33: 0.9244 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN D AND RESID 200:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.005 -40.417 -0.901 REMARK 3 T TENSOR REMARK 3 T11: 5.2206 T22: 8.4870 REMARK 3 T33: 5.7484 T12: -0.7024 REMARK 3 T13: -1.2448 T23: -1.2569 REMARK 3 L TENSOR REMARK 3 L11: 6.6722 L22: 5.5085 REMARK 3 L33: 3.1774 L12: -0.4129 REMARK 3 L13: 7.6909 L23: 4.4261 REMARK 3 S TENSOR REMARK 3 S11: -1.0548 S12: 4.7205 S13: -10.0908 REMARK 3 S21: 1.2584 S22: -12.9018 S23: -4.6215 REMARK 3 S31: -3.8051 S32: -5.7168 S33: 6.1274 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN D AND RESID 209:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.817 -31.663 22.554 REMARK 3 T TENSOR REMARK 3 T11: 8.7263 T22: 7.3817 REMARK 3 T33: 1.3786 T12: -1.2377 REMARK 3 T13: 2.1867 T23: -1.7329 REMARK 3 L TENSOR REMARK 3 L11: 3.5478 L22: 3.4512 REMARK 3 L33: 1.6814 L12: 4.0440 REMARK 3 L13: 1.8596 L23: 3.5138 REMARK 3 S TENSOR REMARK 3 S11: 2.3058 S12: -0.1144 S13: 5.8188 REMARK 3 S21: -1.4929 S22: 7.8112 S23: 6.2959 REMARK 3 S31: -3.6136 S32: -0.1787 S33: -3.8264 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN I AND RESID 101:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.427 -11.142 -17.181 REMARK 3 T TENSOR REMARK 3 T11: 7.2474 T22: 5.5876 REMARK 3 T33: 4.6454 T12: 0.0220 REMARK 3 T13: 0.8375 T23: 1.5410 REMARK 3 L TENSOR REMARK 3 L11: 13.3839 L22: 1.0190 REMARK 3 L33: -2.3122 L12: -2.9924 REMARK 3 L13: -10.3887 L23: 2.6800 REMARK 3 S TENSOR REMARK 3 S11: -0.8616 S12: 0.2570 S13: 0.6500 REMARK 3 S21: -2.3404 S22: 3.6139 S23: 8.4954 REMARK 3 S31: -6.3311 S32: 4.8973 S33: -4.0882 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3631 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.470 REMARK 200 RESOLUTION RANGE LOW (A) : 72.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 88.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 10.8 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75 M AMMONIUM SULFATE, 120 MM TRIS, REMARK 280 120 MM ACETIC ACID, 6 MM EDTA, PH 9.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.54533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.77267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.77267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.54533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, H, A, B, C, D, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DT C 200 O2 DC D 216 3654 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 101 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 DA E 102 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DA E 102 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC E 104 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC H 202 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT H 206 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H 209 O3' - P - O5' ANGL. DEV. = -58.1 DEGREES REMARK 500 DG H 209 O3' - P - OP2 ANGL. DEV. = 19.4 DEGREES REMARK 500 DG H 215 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 104 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC A 109 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 103 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 104 C3' - O3' - P ANGL. DEV. = 24.1 DEGREES REMARK 500 DC B 105 O3' - P - O5' ANGL. DEV. = -40.5 DEGREES REMARK 500 DC B 105 O3' - P - OP2 ANGL. DEV. = 10.9 DEGREES REMARK 500 DA B 109 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC B 119 O3' - P - O5' ANGL. DEV. = 30.8 DEGREES REMARK 500 DC B 119 O3' - P - OP1 ANGL. DEV. = -25.5 DEGREES REMARK 500 DT C 200 C1' - O4' - C4' ANGL. DEV. = -8.9 DEGREES REMARK 500 DT C 200 C3' - C2' - C1' ANGL. DEV. = -11.2 DEGREES REMARK 500 DT C 200 N1 - C1' - C2' ANGL. DEV. = 10.1 DEGREES REMARK 500 DT C 200 O4' - C1' - N1 ANGL. DEV. = 10.2 DEGREES REMARK 500 DC C 202 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC C 202 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 204 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG C 204 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 206 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 201 O5' - P - OP2 ANGL. DEV. = -16.9 DEGREES REMARK 500 DT D 208 C3' - O3' - P ANGL. DEV. = 38.3 DEGREES REMARK 500 DG D 209 O3' - P - O5' ANGL. DEV. = 13.5 DEGREES REMARK 500 DG D 209 O3' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG D 209 O3' - P - OP1 ANGL. DEV. = -23.9 DEGREES REMARK 500 DC D 211 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG I 101 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG I 101 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG I 101 O4' - C1' - N9 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC I 104 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC I 119 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8D31 RELATED DB: PDB REMARK 900 HAS AG/TC STICKY ENDS AND FORMS A CUBIC ARRANGEMENT DBREF 8DAP E 101 124 PDB 8DAP 8DAP 101 124 DBREF 8DAP H 200 216 PDB 8DAP 8DAP 200 216 DBREF 8DAP A 101 124 PDB 8DAP 8DAP 101 124 DBREF 8DAP B 101 121 PDB 8DAP 8DAP 101 121 DBREF 8DAP C 200 216 PDB 8DAP 8DAP 200 216 DBREF 8DAP D 200 216 PDB 8DAP 8DAP 200 216 DBREF 8DAP I 101 124 PDB 8DAP 8DAP 101 124 SEQRES 1 E 24 DG DA DG DC DC DT DA DC DC DC DT DG DT SEQRES 2 E 24 DA DC DG DG DA DC DA DT DC DA DG SEQRES 1 H 17 DT DC DC DT DG DA DT DG DT DG DG DC DT SEQRES 2 H 17 DA DG DG DC SEQRES 1 A 24 DG DA DG DC DC DT DA DC DC DC DT DG DT SEQRES 2 A 24 DA DC DG DG DA DC DA DT DC DA DG SEQRES 1 B 21 DT DA DC DA DC DC DG DT DA DC DA DC DC SEQRES 2 B 21 DG DT DA DC DA DC DC DG SEQRES 1 C 17 DT DC DC DT DG DA DT DG DT DG DG DC DT SEQRES 2 C 17 DA DG DG DC SEQRES 1 D 17 DT DC DC DT DG DA DT DG DT DG DG DC DT SEQRES 2 D 17 DA DG DG DC SEQRES 1 I 24 DG DA DG DC DC DT DA DC DC DC DT DG DT SEQRES 2 I 24 DA DC DG DG DA DC DA DT DC DA DG CRYST1 166.609 166.609 119.318 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006002 0.003465 0.000000 0.00000 SCALE2 0.000000 0.006931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008381 0.00000