HEADER TOXIN 14-JUN-22 8DAX TITLE NEW INSIGHTS INTO THE P186 FLIP AND OLIGOMERIC STATE OF STAPHYLOCOCCUS TITLE 2 AUREUS EXFOLIATIVE TOXIN E: IMPLICATIONS FOR THE EXFOLIATIVE TITLE 3 MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXFOLIATIVE TOXIN E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE PROTEASE; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: ETD2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ETE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.GISMENE,A.F.Z.NASCIMENTO,J.E.HERNANDEZ-GONZALEZ,A.R.N.SANTISTEBAN, AUTHOR 2 F.R.DE MORAES,R.K.ARNI,R.B.MARIUTTI REVDAT 2 18-OCT-23 8DAX 1 REMARK REVDAT 1 02-NOV-22 8DAX 0 JRNL AUTH C.GISMENE,J.E.HERNANDEZ GONZALEZ,A.R.N.SANTISTEBAN, JRNL AUTH 2 A.F.ZIEM NASCIMENTO,L.DOS SANTOS CUNHA,F.R.DE MORAES, JRNL AUTH 3 C.L.P.DE OLIVEIRA,C.C.OLIVEIRA,P.JOCELAN SCARIN PROVAZZI, JRNL AUTH 4 P.G.PASCUTTI,R.K.ARNI,R.BARROS MARIUTTI JRNL TITL STAPHYLOCOCCUS AUREUS EXFOLIATIVE TOXIN E, OLIGOMERIC STATE JRNL TITL 2 AND FLIP OF P186: IMPLICATIONS FOR ITS ACTION MECHANISM. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36077258 JRNL DOI 10.3390/IJMS23179857 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 69347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3650 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5058 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3937 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3632 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5326 ; 1.776 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8496 ; 1.418 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 7.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.098 ;24.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 685 ;15.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;23.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4403 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 772 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8DAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45870 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 48.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.31 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.74 REMARK 200 R MERGE FOR SHELL (I) : 2.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5C2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.32850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.87200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.49275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.87200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.16425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.87200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.87200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.49275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.87200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.87200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.16425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.32850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLN A 249 REMARK 465 MET B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLN B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 209 O HOH B 301 1.62 REMARK 500 O HOH A 333 O HOH A 342 1.83 REMARK 500 O HOH B 304 O HOH B 378 2.01 REMARK 500 OH TYR A 158 OE2 GLU B 72 2.02 REMARK 500 O HOH B 313 O HOH B 373 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 69 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 221 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 221 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 112.47 -33.20 REMARK 500 LYS A 48 -55.27 -125.28 REMARK 500 ALA A 51 -145.71 -138.15 REMARK 500 SER A 161 116.40 -163.97 REMARK 500 PRO A 186 130.52 -39.51 REMARK 500 LYS B 48 -62.97 -125.94 REMARK 500 ALA B 51 -153.27 -136.01 REMARK 500 ILE B 151 -169.98 -124.10 REMARK 500 SER B 161 125.99 -174.21 REMARK 500 GLN B 176 -74.12 -87.82 REMARK 500 PHE B 178 97.38 -42.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 185 PRO A 186 138.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 186 12.04 REMARK 500 PRO A 186 -11.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DAX A 2 249 UNP L0RUV7 L0RUV7_STAAU 33 280 DBREF 8DAX B 2 249 UNP L0RUV7 L0RUV7_STAAU 33 280 SEQADV 8DAX MET A -9 UNP L0RUV7 INITIATING METHIONINE SEQADV 8DAX GLY A -8 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX SER A -7 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX SER A -6 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A -5 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A -4 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A -3 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A -2 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A -1 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS A 0 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX MET A 1 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX MET B -9 UNP L0RUV7 INITIATING METHIONINE SEQADV 8DAX GLY B -8 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX SER B -7 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX SER B -6 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B -5 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B -4 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B -3 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B -2 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B -1 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX HIS B 0 UNP L0RUV7 EXPRESSION TAG SEQADV 8DAX MET B 1 UNP L0RUV7 EXPRESSION TAG SEQRES 1 A 259 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET ILE GLU SEQRES 2 A 259 TYR THR ASP GLU GLU ILE GLN LYS LYS ARG ASP PHE PHE SEQRES 3 A 259 LYS THR ARG PRO SER ASP SER GLU LEU PHE SER LYS ILE SEQRES 4 A 259 GLN ASP THR THR ARG SER PRO TYR SER SER VAL GLY THR SEQRES 5 A 259 VAL PHE VAL LYS GLY LYS THR ILE ALA THR GLY ILE LEU SEQRES 6 A 259 ILE GLY LYS ASN THR VAL ILE THR ASN LYS HIS ILE ALA SEQRES 7 A 259 ARG LEU ALA GLU ASN ASP PRO ASN LYS VAL ILE PHE THR SEQRES 8 A 259 PRO GLY SER THR ARG ASP GLU GLY SER LEU VAL VAL LYS SEQRES 9 A 259 LYS PRO PHE GLY GLU PHE ILE ALA GLU GLU ILE ASN GLU SEQRES 10 A 259 ALA PRO TYR GLY GLY GLY THR ASP LEU SER ILE ILE LYS SEQRES 11 A 259 LEU LYS PRO ASN GLN TYR GLY LYS SER ALA GLY ASP LEU SEQRES 12 A 259 VAL THR PRO ALA ALA ILE PRO ASP ASN VAL ASP VAL GLN SEQRES 13 A 259 LYS GLY ASP LYS ILE SER LEU LEU GLY TYR PRO TYR ASN SEQRES 14 A 259 THR SER THR HIS SER LEU TYR LYS SER GLN ILE GLU VAL SEQRES 15 A 259 PHE ASN ASN GLN THR PHE GLN TYR PHE ALA TYR THR GLU SEQRES 16 A 259 PRO GLY ASN SER GLY SER GLY ILE PHE ASN LEU HIS GLY SEQRES 17 A 259 GLU LEU VAL GLY ILE HIS SER GLY LYS GLY GLY GLN TYR SEQRES 18 A 259 GLY LEU PRO PHE GLY ILE LEU PHE ASN ARG GLN ILE GLY SEQRES 19 A 259 SER SER TYR SER THR ASP LYS THR VAL THR THR LEU ALA SEQRES 20 A 259 ILE ASP LEU LYS ASN LYS ALA LYS THR GLN GLU GLN SEQRES 1 B 259 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET ILE GLU SEQRES 2 B 259 TYR THR ASP GLU GLU ILE GLN LYS LYS ARG ASP PHE PHE SEQRES 3 B 259 LYS THR ARG PRO SER ASP SER GLU LEU PHE SER LYS ILE SEQRES 4 B 259 GLN ASP THR THR ARG SER PRO TYR SER SER VAL GLY THR SEQRES 5 B 259 VAL PHE VAL LYS GLY LYS THR ILE ALA THR GLY ILE LEU SEQRES 6 B 259 ILE GLY LYS ASN THR VAL ILE THR ASN LYS HIS ILE ALA SEQRES 7 B 259 ARG LEU ALA GLU ASN ASP PRO ASN LYS VAL ILE PHE THR SEQRES 8 B 259 PRO GLY SER THR ARG ASP GLU GLY SER LEU VAL VAL LYS SEQRES 9 B 259 LYS PRO PHE GLY GLU PHE ILE ALA GLU GLU ILE ASN GLU SEQRES 10 B 259 ALA PRO TYR GLY GLY GLY THR ASP LEU SER ILE ILE LYS SEQRES 11 B 259 LEU LYS PRO ASN GLN TYR GLY LYS SER ALA GLY ASP LEU SEQRES 12 B 259 VAL THR PRO ALA ALA ILE PRO ASP ASN VAL ASP VAL GLN SEQRES 13 B 259 LYS GLY ASP LYS ILE SER LEU LEU GLY TYR PRO TYR ASN SEQRES 14 B 259 THR SER THR HIS SER LEU TYR LYS SER GLN ILE GLU VAL SEQRES 15 B 259 PHE ASN ASN GLN THR PHE GLN TYR PHE ALA TYR THR GLU SEQRES 16 B 259 PRO GLY ASN SER GLY SER GLY ILE PHE ASN LEU HIS GLY SEQRES 17 B 259 GLU LEU VAL GLY ILE HIS SER GLY LYS GLY GLY GLN TYR SEQRES 18 B 259 GLY LEU PRO PHE GLY ILE LEU PHE ASN ARG GLN ILE GLY SEQRES 19 B 259 SER SER TYR SER THR ASP LYS THR VAL THR THR LEU ALA SEQRES 20 B 259 ILE ASP LEU LYS ASN LYS ALA LYS THR GLN GLU GLN FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 THR A 5 PHE A 16 1 12 HELIX 2 AA2 PRO A 36 SER A 38 5 3 HELIX 3 AA3 ASN A 64 ARG A 69 1 6 HELIX 4 AA4 LEU A 70 GLU A 72 5 3 HELIX 5 AA5 ASP A 74 ASN A 76 5 3 HELIX 6 AA6 SER A 129 VAL A 134 1 6 HELIX 7 AA7 GLU A 185 SER A 189 5 5 HELIX 8 AA8 GLY A 224 SER A 228 5 5 HELIX 9 AA9 LEU A 236 GLN A 247 1 12 HELIX 10 AB1 THR B 5 PHE B 16 1 12 HELIX 11 AB2 PRO B 36 SER B 38 5 3 HELIX 12 AB3 ASN B 64 ARG B 69 1 6 HELIX 13 AB4 LEU B 70 GLU B 72 5 3 HELIX 14 AB5 ASP B 74 ASN B 76 5 3 HELIX 15 AB6 TYR B 110 THR B 114 5 5 HELIX 16 AB7 SER B 129 VAL B 134 1 6 HELIX 17 AB8 GLU B 185 SER B 189 5 5 HELIX 18 AB9 LEU B 236 GLN B 247 1 12 SHEET 1 AA1 8 PHE A 26 ILE A 29 0 SHEET 2 AA1 8 LEU A 165 ASN A 174 -1 O LYS A 167 N SER A 27 SHEET 3 AA1 8 GLN A 179 PHE A 181 -1 O GLN A 179 N PHE A 173 SHEET 4 AA1 8 LEU A 213 LEU A 218 -1 O PRO A 214 N TYR A 180 SHEET 5 AA1 8 LEU A 200 GLY A 208 -1 N GLY A 206 O PHE A 215 SHEET 6 AA1 8 GLY A 192 PHE A 194 -1 N ILE A 193 O GLY A 202 SHEET 7 AA1 8 LYS A 150 GLY A 155 -1 N SER A 152 O PHE A 194 SHEET 8 AA1 8 LEU A 165 ASN A 174 -1 O SER A 168 N LEU A 153 SHEET 1 AA2 7 VAL A 40 VAL A 45 0 SHEET 2 AA2 7 THR A 49 GLY A 57 -1 O ALA A 51 N VAL A 43 SHEET 3 AA2 7 THR A 60 THR A 63 -1 O THR A 60 N ILE A 56 SHEET 4 AA2 7 SER A 117 LEU A 121 -1 O ILE A 119 N VAL A 61 SHEET 5 AA2 7 PHE A 100 ASN A 106 -1 N GLU A 103 O LYS A 120 SHEET 6 AA2 7 VAL A 78 PRO A 82 -1 N PHE A 80 O PHE A 100 SHEET 7 AA2 7 VAL A 40 VAL A 45 -1 N PHE A 44 O ILE A 79 SHEET 1 AA3 2 THR A 85 ARG A 86 0 SHEET 2 AA3 2 VAL A 93 LYS A 94 -1 O LYS A 94 N THR A 85 SHEET 1 AA4 2 GLN A 222 ILE A 223 0 SHEET 2 AA4 2 THR A 234 THR A 235 -1 O THR A 234 N ILE A 223 SHEET 1 AA5 8 PHE B 26 LYS B 28 0 SHEET 2 AA5 8 TYR B 166 ASN B 174 -1 O LYS B 167 N SER B 27 SHEET 3 AA5 8 GLN B 179 PHE B 181 -1 O GLN B 179 N PHE B 173 SHEET 4 AA5 8 LEU B 213 LEU B 218 -1 O PRO B 214 N TYR B 180 SHEET 5 AA5 8 LEU B 200 GLY B 208 -1 N ILE B 203 O ILE B 217 SHEET 6 AA5 8 GLY B 192 PHE B 194 -1 N ILE B 193 O VAL B 201 SHEET 7 AA5 8 LYS B 150 GLY B 155 -1 N SER B 152 O PHE B 194 SHEET 8 AA5 8 TYR B 166 ASN B 174 -1 O SER B 168 N LEU B 153 SHEET 1 AA6 7 VAL B 40 VAL B 45 0 SHEET 2 AA6 7 THR B 49 LEU B 55 -1 O THR B 49 N VAL B 45 SHEET 3 AA6 7 THR B 60 THR B 63 -1 O ILE B 62 N ILE B 54 SHEET 4 AA6 7 SER B 117 LEU B 121 -1 O ILE B 119 N VAL B 61 SHEET 5 AA6 7 PHE B 100 ASN B 106 -1 N GLU B 103 O LYS B 120 SHEET 6 AA6 7 VAL B 78 PRO B 82 -1 N PHE B 80 O PHE B 100 SHEET 7 AA6 7 VAL B 40 VAL B 45 -1 N PHE B 44 O ILE B 79 SHEET 1 AA7 2 GLN B 222 ILE B 223 0 SHEET 2 AA7 2 THR B 234 THR B 235 -1 O THR B 234 N ILE B 223 CISPEP 1 SER A 35 PRO A 36 0 -2.04 CISPEP 2 SER B 35 PRO B 36 0 0.54 CRYST1 97.744 97.744 116.657 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008572 0.00000