HEADER HYDROLASE/HYDROLASE INHIBITOR 14-JUN-22 8DB7 TITLE ADENOSINE/GUANOSINE NUCLEOSIDE HYDROLASE BOUND TO A FRAGMENT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: B, A, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_213720; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSIDE, HYDROLASE, ADENOSINE, GUANOSINE, PARASITIC, INHIBITOR, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.N.MUELLERS,K.N.ALLEN,B.J.STOCKMAN REVDAT 3 03-APR-24 8DB7 1 REMARK REVDAT 2 14-SEP-22 8DB7 1 JRNL REVDAT 1 07-SEP-22 8DB7 0 JRNL AUTH S.N.MUELLERS,M.M.NYITRAY,N.REYNAROWYCH,E.SALJANIN, JRNL AUTH 2 A.L.BENZIE,A.R.SCHOENFELD,B.J.STOCKMAN,K.N.ALLEN JRNL TITL STRUCTURE-GUIDED INSIGHT INTO THE SPECIFICITY AND MECHANISM JRNL TITL 2 OF A PARASITIC NUCLEOSIDE HYDROLASE. JRNL REF BIOCHEMISTRY V. 61 1853 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 35994320 JRNL DOI 10.1021/ACS.BIOCHEM.2C00361 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 51489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9900 - 5.6000 0.99 3581 145 0.1563 0.1784 REMARK 3 2 5.6000 - 4.4500 0.98 3561 143 0.1690 0.2249 REMARK 3 3 4.4500 - 3.8900 0.98 3542 144 0.1642 0.2234 REMARK 3 4 3.8900 - 3.5300 0.99 3590 145 0.1877 0.2540 REMARK 3 5 3.5300 - 3.2800 0.99 3585 145 0.1982 0.2567 REMARK 3 6 3.2800 - 3.0900 0.99 3547 143 0.2163 0.2871 REMARK 3 7 3.0900 - 2.9300 0.99 3592 145 0.2208 0.2853 REMARK 3 8 2.9300 - 2.8000 0.99 3510 142 0.2195 0.2962 REMARK 3 9 2.8000 - 2.7000 0.98 3587 145 0.2194 0.2794 REMARK 3 10 2.7000 - 2.6000 0.98 3563 144 0.2378 0.2971 REMARK 3 11 2.6000 - 2.5200 0.98 3533 142 0.2437 0.3208 REMARK 3 12 2.5200 - 2.4500 0.98 3570 145 0.2542 0.3460 REMARK 3 13 2.4500 - 2.3900 0.98 3533 142 0.2665 0.3768 REMARK 3 14 2.3900 - 2.3300 0.89 3195 130 0.2717 0.3676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.354 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9627 REMARK 3 ANGLE : 1.058 13075 REMARK 3 CHIRALITY : 0.068 1474 REMARK 3 PLANARITY : 0.006 1709 REMARK 3 DIHEDRAL : 22.494 3495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 29.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: ALPHAFOLD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 25% PEG-3350, REMARK 280 AND 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -50.65100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 303 REMARK 465 GLN C 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 MET C 74 CG SD CE REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR D 7 OD2 ASP D 13 1.41 REMARK 500 SG CYS D 9 N VAL D 47 1.75 REMARK 500 OH TYR D 248 CG2 ILE D 296 1.90 REMARK 500 O GLY C 35 O HOH C 501 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP C 212 CB ASP C 212 CG 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 212 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLY A 10 C - N - CA ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 8 40.13 -107.96 REMARK 500 CYS B 9 89.55 -21.43 REMARK 500 THR B 57 48.76 -86.20 REMARK 500 PRO B 68 170.66 -59.86 REMARK 500 MET B 74 -146.61 54.39 REMARK 500 LEU B 101 115.10 -165.60 REMARK 500 ASN B 199 37.99 -88.57 REMARK 500 ASN B 210 55.55 -146.79 REMARK 500 CYS A 9 93.94 -31.18 REMARK 500 ALA A 138 60.27 -155.72 REMARK 500 ASN A 210 32.05 -146.86 REMARK 500 PRO A 237 57.56 -93.00 REMARK 500 LYS A 254 -70.70 -79.56 REMARK 500 ASP C 8 48.12 -109.73 REMARK 500 CYS C 9 92.32 -25.69 REMARK 500 GLU C 75 128.79 70.25 REMARK 500 HIS C 78 20.63 -155.61 REMARK 500 HIS C 80 30.28 -94.51 REMARK 500 ASN C 199 37.91 -90.60 REMARK 500 ASN C 210 55.00 -153.08 REMARK 500 ASP C 278 122.35 -171.20 REMARK 500 MET D 74 143.89 64.89 REMARK 500 PRO D 77 42.22 -80.05 REMARK 500 THR D 95 37.14 -99.04 REMARK 500 ALA D 154 94.90 -161.78 REMARK 500 ASN D 160 -58.89 -132.29 REMARK 500 ASN D 199 46.72 -85.63 REMARK 500 ASN D 210 64.92 -154.38 REMARK 500 ASP D 278 116.87 -164.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS B 9 GLY B 10 147.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 ASP B 13 OD1 82.1 REMARK 620 3 ASP B 13 OD2 74.3 51.4 REMARK 620 4 LEU B 125 O 82.1 128.6 77.2 REMARK 620 5 ASP B 239 OD2 141.9 72.2 67.8 92.4 REMARK 620 6 GOL B 401 O1 139.7 134.7 137.7 83.5 76.0 REMARK 620 7 HOH B 503 O 110.0 67.1 117.5 162.6 85.5 79.2 REMARK 620 8 HOH B 507 O 71.9 127.5 145.7 92.5 146.2 71.4 80.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 13 OD1 84.9 REMARK 620 3 ASP A 13 OD2 76.5 48.6 REMARK 620 4 LEU A 125 O 85.5 134.1 85.4 REMARK 620 5 ASP A 239 OD2 140.3 71.5 64.0 88.6 REMARK 620 6 GOL A 401 O2 129.6 139.6 145.8 76.5 86.5 REMARK 620 7 GOL A 401 O3 111.5 73.8 121.6 150.1 92.4 73.7 REMARK 620 8 HOH A 517 O 72.7 128.1 149.1 91.0 146.7 61.2 72.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 8 OD1 REMARK 620 2 ASP C 13 OD1 78.6 REMARK 620 3 ASP C 13 OD2 71.9 44.9 REMARK 620 4 LEU C 125 O 91.8 134.0 89.2 REMARK 620 5 ASP C 239 OD2 142.2 69.4 71.3 96.2 REMARK 620 6 GOL C 401 O2 111.2 69.4 113.1 151.6 76.0 REMARK 620 7 GOL C 401 O3 142.1 132.0 144.2 80.7 75.7 70.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 13 OD1 REMARK 620 2 ASP D 13 OD2 46.7 REMARK 620 3 LEU D 125 O 124.2 77.5 REMARK 620 4 ASP D 239 OD2 72.2 71.7 92.9 REMARK 620 5 GOL D 401 O2 139.7 145.0 84.7 79.5 REMARK 620 6 HOH D 508 O 72.8 119.2 161.6 85.9 77.1 REMARK 620 N 1 2 3 4 5 DBREF 8DB7 B 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB7 A 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB7 C 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB7 D 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 SEQRES 1 B 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 B 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 B 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 B 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 B 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 B 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 B 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 B 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 B 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 B 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 B 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 B 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 B 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 B 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 B 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 B 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 B 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 B 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 B 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 B 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 B 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 B 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 B 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 B 304 LEU GLN ASP HIS GLN SEQRES 1 A 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 A 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 A 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 A 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 A 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 A 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 A 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 A 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 A 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 A 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 A 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 A 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 A 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 A 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 A 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 A 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 A 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 A 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 A 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 A 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 A 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 A 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 A 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 A 304 LEU GLN ASP HIS GLN SEQRES 1 C 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 C 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 C 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 C 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 C 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 C 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 C 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 C 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 C 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 C 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 C 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 C 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 C 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 C 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 C 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 C 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 C 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 C 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 C 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 C 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 C 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 C 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 C 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 C 304 LEU GLN ASP HIS GLN SEQRES 1 D 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 D 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 D 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 D 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 D 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 D 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 D 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 D 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 D 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 D 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 D 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 D 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 D 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 D 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 D 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 D 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 D 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 D 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 D 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 D 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 D 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 D 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 D 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 D 304 LEU GLN ASP HIS GLN HET GOL B 401 6 HET R2O B 402 13 HET CA B 403 1 HET GOL A 401 6 HET CA A 402 1 HET GOL C 401 6 HET R2O C 402 13 HET CA C 403 1 HET GOL D 401 6 HET R2O D 402 13 HET CA D 403 1 HETNAM GOL GLYCEROL HETNAM R2O N-(4-FLUOROPHENYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-AMINE HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 R2O 3(C9 H10 F N3) FORMUL 7 CA 4(CA 2+) FORMUL 16 HOH *237(H2 O) HELIX 1 AA1 GLY B 10 ASN B 23 1 14 HELIX 2 AA2 SER B 39 GLY B 55 1 17 HELIX 3 AA3 HIS B 105 ILE B 117 1 13 HELIX 4 AA4 LEU B 128 ALA B 138 1 11 HELIX 5 AA5 ALA B 138 LEU B 143 1 6 HELIX 6 AA6 GLU B 166 ASP B 172 1 7 HELIX 7 AA7 ASP B 172 TYR B 183 1 12 HELIX 8 AA8 PRO B 184 TYR B 186 5 3 HELIX 9 AA9 SER B 192 ASN B 199 1 8 HELIX 10 AB1 ASN B 214 ASP B 231 1 18 HELIX 11 AB2 PRO B 237 GLY B 249 1 13 HELIX 12 AB3 ASP B 289 GLN B 301 1 13 HELIX 13 AB4 GLY A 10 ASN A 23 1 14 HELIX 14 AB5 SER A 39 GLY A 55 1 17 HELIX 15 AB6 ILE A 76 GLY A 81 1 6 HELIX 16 AB7 ASN A 89 GLY A 94 1 6 HELIX 17 AB8 HIS A 105 ILE A 117 1 13 HELIX 18 AB9 LEU A 128 ALA A 138 1 11 HELIX 19 AC1 ALA A 138 LYS A 144 1 7 HELIX 20 AC2 PHE A 167 ASP A 172 1 6 HELIX 21 AC3 ASP A 172 TYR A 183 1 12 HELIX 22 AC4 PRO A 184 TYR A 186 5 3 HELIX 23 AC5 SER A 192 PHE A 198 1 7 HELIX 24 AC6 ASN A 214 ASP A 231 1 18 HELIX 25 AC7 PRO A 237 ALA A 252 1 16 HELIX 26 AC8 ASP A 289 GLN A 301 1 13 HELIX 27 AC9 GLY C 10 ASN C 23 1 14 HELIX 28 AD1 SER C 39 GLY C 55 1 17 HELIX 29 AD2 ASN C 89 PHE C 93 5 5 HELIX 30 AD3 HIS C 105 ILE C 117 1 13 HELIX 31 AD4 LEU C 128 ALA C 138 1 11 HELIX 32 AD5 ALA C 138 LEU C 143 1 6 HELIX 33 AD6 THR C 162 GLU C 166 5 5 HELIX 34 AD7 PHE C 167 ASP C 172 1 6 HELIX 35 AD8 ASP C 172 TYR C 183 1 12 HELIX 36 AD9 PRO C 184 TYR C 186 5 3 HELIX 37 AE1 SER C 192 ASN C 199 1 8 HELIX 38 AE2 ASN C 214 PHE C 230 1 17 HELIX 39 AE3 ALA C 238 GLY C 249 1 12 HELIX 40 AE4 ASP C 289 GLN C 301 1 13 HELIX 41 AE5 GLY D 10 ASN D 23 1 14 HELIX 42 AE6 SER D 39 GLY D 55 1 17 HELIX 43 AE7 HIS D 105 ILE D 117 1 13 HELIX 44 AE8 LEU D 128 ALA D 138 1 11 HELIX 45 AE9 ALA D 138 LYS D 144 1 7 HELIX 46 AF1 GLU D 166 ASP D 172 1 7 HELIX 47 AF2 ASP D 172 TYR D 183 1 12 HELIX 48 AF3 SER D 192 ASN D 199 1 8 HELIX 49 AF4 ASN D 214 ASP D 231 1 18 HELIX 50 AF5 PRO D 237 GLY D 249 1 13 HELIX 51 AF6 ASP D 289 LEU D 300 1 12 SHEET 1 AA1 9 ILE B 61 GLY B 63 0 SHEET 2 AA1 9 GLU B 27 CYS B 33 1 N ILE B 31 O PHE B 62 SHEET 3 AA1 9 LYS B 2 THR B 7 1 N ILE B 5 O SER B 32 SHEET 4 AA1 9 LEU B 120 LEU B 125 1 O LEU B 123 N TRP B 4 SHEET 5 AA1 9 HIS B 147 MET B 151 1 O TYR B 149 N CYS B 124 SHEET 6 AA1 9 THR B 188 ALA B 191 1 O THR B 189 N PHE B 148 SHEET 7 AA1 9 CYS B 282 CYS B 288 1 O LEU B 283 N ILE B 190 SHEET 8 AA1 9 ILE B 253 MET B 263 -1 N LEU B 259 O CYS B 282 SHEET 9 AA1 9 SER B 273 PRO B 277 -1 O GLU B 276 N HIS B 260 SHEET 1 AA2 2 PHE B 201 ASN B 202 0 SHEET 2 AA2 2 ARG B 234 ILE B 235 -1 O ILE B 235 N PHE B 201 SHEET 1 AA3 9 ILE A 61 GLY A 63 0 SHEET 2 AA3 9 GLU A 27 CYS A 33 1 N ILE A 31 O PHE A 62 SHEET 3 AA3 9 LYS A 2 THR A 7 1 N LEU A 3 O GLU A 27 SHEET 4 AA3 9 LEU A 120 CYS A 124 1 O LEU A 123 N TRP A 4 SHEET 5 AA3 9 HIS A 147 MET A 151 1 O TYR A 149 N CYS A 124 SHEET 6 AA3 9 THR A 188 ALA A 191 1 O THR A 189 N PHE A 148 SHEET 7 AA3 9 CYS A 282 CYS A 288 1 O LEU A 283 N ILE A 190 SHEET 8 AA3 9 ILE A 253 MET A 263 -1 N LEU A 259 O CYS A 282 SHEET 9 AA3 9 SER A 273 PRO A 277 -1 O GLU A 276 N HIS A 260 SHEET 1 AA4 2 PHE A 201 ASN A 202 0 SHEET 2 AA4 2 ARG A 234 ILE A 235 -1 O ILE A 235 N PHE A 201 SHEET 1 AA5 9 ILE C 61 GLY C 63 0 SHEET 2 AA5 9 GLU C 27 CYS C 33 1 N ILE C 31 O PHE C 62 SHEET 3 AA5 9 LYS C 2 THR C 7 1 N LEU C 3 O GLU C 27 SHEET 4 AA5 9 ASN C 121 CYS C 124 1 O LEU C 123 N TRP C 4 SHEET 5 AA5 9 HIS C 147 MET C 151 1 O TYR C 149 N CYS C 124 SHEET 6 AA5 9 THR C 188 ALA C 191 1 O THR C 189 N PHE C 148 SHEET 7 AA5 9 CYS C 282 CYS C 288 1 O LEU C 283 N ILE C 190 SHEET 8 AA5 9 ILE C 253 MET C 263 -1 N GLU C 257 O VAL C 284 SHEET 9 AA5 9 SER C 273 PRO C 277 -1 O LEU C 274 N SER C 262 SHEET 1 AA6 2 PHE C 201 ASN C 202 0 SHEET 2 AA6 2 ARG C 234 ILE C 235 -1 O ILE C 235 N PHE C 201 SHEET 1 AA7 9 ILE D 61 GLY D 63 0 SHEET 2 AA7 9 GLU D 27 CYS D 33 1 N ILE D 31 O PHE D 62 SHEET 3 AA7 9 LYS D 2 THR D 7 1 N LEU D 3 O GLU D 27 SHEET 4 AA7 9 LEU D 120 CYS D 124 1 O LEU D 123 N TRP D 4 SHEET 5 AA7 9 HIS D 147 MET D 151 1 O TYR D 149 N CYS D 124 SHEET 6 AA7 9 THR D 188 ALA D 191 1 O ALA D 191 N ILE D 150 SHEET 7 AA7 9 CYS D 282 CYS D 288 1 O LEU D 283 N ILE D 190 SHEET 8 AA7 9 ILE D 253 MET D 263 -1 N GLU D 257 O VAL D 284 SHEET 9 AA7 9 SER D 273 PRO D 277 -1 O LEU D 274 N SER D 262 SHEET 1 AA8 2 PHE D 201 ASN D 202 0 SHEET 2 AA8 2 ARG D 234 ILE D 235 -1 O ILE D 235 N PHE D 201 LINK OD1 ASP B 8 CA CA B 403 1555 1555 2.49 LINK OD1 ASP B 13 CA CA B 403 1555 1555 2.48 LINK OD2 ASP B 13 CA CA B 403 1555 1555 2.54 LINK O LEU B 125 CA CA B 403 1555 1555 2.34 LINK OD2 ASP B 239 CA CA B 403 1555 1555 2.47 LINK O1 GOL B 401 CA CA B 403 1555 1555 2.74 LINK CA CA B 403 O HOH B 503 1555 1555 2.53 LINK CA CA B 403 O HOH B 507 1555 1555 2.55 LINK OD1 ASP A 8 CA CA A 402 1555 1555 2.36 LINK OD1 ASP A 13 CA CA A 402 1555 1555 2.79 LINK OD2 ASP A 13 CA CA A 402 1555 1555 2.58 LINK O LEU A 125 CA CA A 402 1555 1555 2.38 LINK OD2 ASP A 239 CA CA A 402 1555 1555 2.60 LINK O2 GOL A 401 CA CA A 402 1555 1555 2.86 LINK O3 GOL A 401 CA CA A 402 1555 1555 2.74 LINK CA CA A 402 O HOH A 517 1555 1555 2.58 LINK OD1 ASP C 8 CA CA C 403 1555 1555 2.49 LINK OD1 ASP C 13 CA CA C 403 1555 1555 2.81 LINK OD2 ASP C 13 CA CA C 403 1555 1555 2.67 LINK O LEU C 125 CA CA C 403 1555 1555 2.28 LINK OD2 ASP C 239 CA CA C 403 1555 1555 2.62 LINK O2 GOL C 401 CA CA C 403 1555 1555 2.20 LINK O3 GOL C 401 CA CA C 403 1555 1555 2.57 LINK OD1 ASP D 13 CA CA D 403 1555 1555 2.29 LINK OD2 ASP D 13 CA CA D 403 1555 1555 3.01 LINK O LEU D 125 CA CA D 403 1555 1555 2.26 LINK OD2 ASP D 239 CA CA D 403 1555 1555 2.35 LINK O2 GOL D 401 CA CA D 403 1555 1555 2.95 LINK CA CA D 403 O HOH D 508 1555 1555 2.46 CRYST1 50.651 74.537 85.641 83.02 80.90 89.90 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019743 -0.000034 -0.003183 0.00000 SCALE2 0.000000 0.013416 -0.001660 0.00000 SCALE3 0.000000 0.000000 0.011916 0.00000