HEADER HYDROLASE/HYDROLASE INHIBITOR 14-JUN-22 8DB9 TITLE ADENOSINE/GUANOSINE NUCLEOSIDE HYDROLASE BOUND TO INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_213720; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSIDE, HYDROLASE, ADENOSINE, GUANOSINE, PARASITIC, INHIBITOR, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.N.MUELLERS,K.N.ALLEN,B.J.STOCKMAN REVDAT 3 03-APR-24 8DB9 1 REMARK REVDAT 2 14-SEP-22 8DB9 1 JRNL REVDAT 1 07-SEP-22 8DB9 0 JRNL AUTH S.N.MUELLERS,M.M.NYITRAY,N.REYNAROWYCH,E.SALJANIN, JRNL AUTH 2 A.L.BENZIE,A.R.SCHOENFELD,B.J.STOCKMAN,K.N.ALLEN JRNL TITL STRUCTURE-GUIDED INSIGHT INTO THE SPECIFICITY AND MECHANISM JRNL TITL 2 OF A PARASITIC NUCLEOSIDE HYDROLASE. JRNL REF BIOCHEMISTRY V. 61 1853 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 35994320 JRNL DOI 10.1021/ACS.BIOCHEM.2C00361 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 23145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1300 - 6.2200 0.91 2239 143 0.1732 0.2411 REMARK 3 2 6.2200 - 4.9400 0.90 2220 138 0.2453 0.3420 REMARK 3 3 4.9400 - 4.3200 0.91 2267 141 0.2163 0.2828 REMARK 3 4 4.3200 - 3.9200 0.88 2162 134 0.2479 0.3502 REMARK 3 5 3.9200 - 3.6400 0.85 2111 134 0.3089 0.3985 REMARK 3 6 3.6400 - 3.4300 0.88 2168 133 0.3345 0.4499 REMARK 3 7 3.4300 - 3.2500 0.84 2099 130 0.3388 0.3932 REMARK 3 8 3.2500 - 3.1100 0.89 2203 135 0.3238 0.3818 REMARK 3 9 3.1100 - 2.9900 0.87 2111 140 0.3478 0.4155 REMARK 3 10 2.9900 - 2.8900 0.88 2207 130 0.3459 0.4175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.587 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 9600 REMARK 3 ANGLE : 1.253 13053 REMARK 3 CHIRALITY : 0.071 1484 REMARK 3 PLANARITY : 0.007 1705 REMARK 3 DIHEDRAL : 23.227 3498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 38.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.12900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: ALPHAFOLD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 25% PEG-3350, REMARK 280 AND 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 50.40600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 304 REMARK 465 LYS C 158 REMARK 465 HIS C 303 REMARK 465 GLN C 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 MET C 74 CG SD CE REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 212 NH1 ARG A 218 1.46 REMARK 500 OD1 ASP C 13 OD2 ASP C 239 1.69 REMARK 500 CG ASP A 212 NH1 ARG A 218 1.87 REMARK 500 OD1 ASP A 212 NH2 ARG A 218 1.97 REMARK 500 OD1 ASP A 212 NH1 ARG A 218 2.01 REMARK 500 OG1 THR D 162 O GLY D 165 2.09 REMARK 500 OD1 ASP B 6 OG SER B 32 2.12 REMARK 500 OD1 ASP D 6 OG SER D 32 2.12 REMARK 500 OG1 THR A 129 OD2 ASP A 172 2.12 REMARK 500 O ILE D 178 OG1 THR D 182 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N LEU A 215 OE2 GLU A 276 1655 1.92 REMARK 500 CB LEU A 215 OE2 GLU A 276 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 9 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 59.49 -97.74 REMARK 500 CYS A 9 92.34 -46.86 REMARK 500 PRO A 24 29.87 -79.67 REMARK 500 PRO A 68 172.34 -59.81 REMARK 500 ILE A 76 70.41 -119.09 REMARK 500 ASN A 96 51.34 -108.58 REMARK 500 ALA A 154 58.27 -147.24 REMARK 500 ASN A 156 -65.29 -125.16 REMARK 500 PRO A 163 -109.94 -85.79 REMARK 500 TYR A 164 -81.40 -130.63 REMARK 500 GLN A 187 30.70 -99.67 REMARK 500 ASN A 199 50.70 -104.44 REMARK 500 ASN A 210 78.67 -151.20 REMARK 500 ASN A 214 -157.15 -142.97 REMARK 500 PRO A 237 106.71 -57.98 REMARK 500 ALA A 252 3.30 -152.00 REMARK 500 PRO A 277 89.44 -43.97 REMARK 500 LYS A 280 37.88 -98.32 REMARK 500 GLN A 301 45.56 -91.32 REMARK 500 ASP B 8 51.43 -107.01 REMARK 500 CYS B 9 97.76 -40.79 REMARK 500 LYS B 56 56.18 -111.55 REMARK 500 ASP B 58 -21.01 -140.23 REMARK 500 LEU B 85 72.93 -157.62 REMARK 500 PHE B 93 -11.00 -141.33 REMARK 500 LEU B 125 44.60 -104.16 REMARK 500 ALA B 126 -178.55 -170.36 REMARK 500 LEU B 128 30.43 -93.77 REMARK 500 ASN B 160 -42.92 -136.59 REMARK 500 ASP B 172 78.88 -155.36 REMARK 500 ASN B 210 81.98 -161.46 REMARK 500 CYS B 236 76.60 -108.19 REMARK 500 PRO B 237 86.26 -64.41 REMARK 500 ARG B 255 100.17 -160.41 REMARK 500 LYS B 269 40.22 -97.60 REMARK 500 ASP C 8 36.92 -95.96 REMARK 500 CYS C 9 93.59 -6.33 REMARK 500 LYS C 56 87.07 -157.29 REMARK 500 VAL C 70 -30.16 -132.62 REMARK 500 ASP C 87 66.00 62.18 REMARK 500 ASN C 96 54.84 -100.80 REMARK 500 PRO C 127 141.61 -38.90 REMARK 500 ASN C 156 98.47 -68.95 REMARK 500 PHE C 167 -46.01 -136.65 REMARK 500 THR C 182 -61.76 -127.85 REMARK 500 GLN C 187 45.29 -92.66 REMARK 500 ASN C 199 43.08 -107.11 REMARK 500 ALA C 203 -75.97 52.94 REMARK 500 ASN C 214 -161.46 -162.25 REMARK 500 PRO C 237 75.11 -62.18 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 8 OD2 44.2 REMARK 620 3 ASP A 13 OD1 86.0 100.8 REMARK 620 4 ASP A 13 OD2 62.5 102.0 45.3 REMARK 620 5 LEU A 125 O 74.2 103.4 117.8 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 ASP B 13 OD1 86.3 REMARK 620 3 ASP B 13 OD2 74.9 48.2 REMARK 620 4 LEU B 125 O 71.9 105.0 56.9 REMARK 620 5 ASP B 239 OD2 141.5 65.2 66.8 90.2 REMARK 620 6 R1Y B 401 O13 134.3 139.4 131.3 91.8 78.3 REMARK 620 7 R1Y B 401 O14 127.4 92.3 136.4 155.5 81.3 64.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 8 OD1 REMARK 620 2 ASP C 13 OD1 91.7 REMARK 620 3 LEU C 125 O 78.0 92.1 REMARK 620 4 R1Y C 401 O13 170.9 91.9 93.5 REMARK 620 5 R1Y C 401 O14 126.3 109.9 144.8 59.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 8 OD1 REMARK 620 2 ASP D 13 OD1 91.7 REMARK 620 3 ASP D 13 OD2 53.3 49.7 REMARK 620 4 LEU D 125 O 59.5 125.2 77.2 REMARK 620 5 ASP D 239 OD2 133.5 66.5 83.3 99.1 REMARK 620 6 R1Y D 401 O13 137.4 121.9 169.3 108.8 87.0 REMARK 620 7 R1Y D 401 O14 98.8 80.7 115.1 143.4 116.1 65.6 REMARK 620 N 1 2 3 4 5 6 DBREF 8DB9 A 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB9 B 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB9 C 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 DBREF 8DB9 D 1 304 UNP A2EYV3 A2EYV3_TRIVA 1 304 SEQRES 1 A 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 A 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 A 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 A 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 A 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 A 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 A 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 A 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 A 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 A 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 A 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 A 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 A 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 A 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 A 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 A 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 A 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 A 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 A 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 A 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 A 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 A 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 A 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 A 304 LEU GLN ASP HIS GLN SEQRES 1 B 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 B 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 B 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 B 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 B 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 B 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 B 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 B 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 B 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 B 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 B 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 B 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 B 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 B 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 B 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 B 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 B 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 B 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 B 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 B 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 B 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 B 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 B 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 B 304 LEU GLN ASP HIS GLN SEQRES 1 C 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 C 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 C 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 C 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 C 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 C 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 C 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 C 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 C 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 C 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 C 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 C 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 C 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 C 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 C 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 C 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 C 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 C 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 C 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 C 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 C 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 C 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 C 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 C 304 LEU GLN ASP HIS GLN SEQRES 1 D 304 MET LYS LEU TRP ILE ASP THR ASP CYS GLY ILE ASP ASP SEQRES 2 D 304 ALA THR ALA ILE LEU ILE CYS LEU ALA ASN PRO SER ILE SEQRES 3 D 304 GLU ILE VAL GLY ILE SER CYS ILE GLY GLY ASN ALA SER SEQRES 4 D 304 LEU GLN ASN VAL ILE ARG ASN VAL ASN ARG THR LEU LYS SEQRES 5 D 304 VAL TRP GLY LYS THR ASP ILE PRO ILE PHE GLY GLY CYS SEQRES 6 D 304 GLN ALA PRO LEU VAL GLN PRO LYS MET GLU ILE PRO HIS SEQRES 7 D 304 ILE HIS GLY GLY ASP GLY LEU GLY ASP ILE ASN ASP ASN SEQRES 8 D 304 ASP PHE GLY THR ASN THR PRO ASN LYS LEU GLU LYS GLU SEQRES 9 D 304 HIS ALA VAL ASN ALA LEU ILE HIS ALA ALA ASN THR ILE SEQRES 10 D 304 GLU ASP LEU ASN ILE LEU CYS LEU ALA PRO LEU THR ASN SEQRES 11 D 304 ILE ALA ILE ALA LEU SER MET ALA PRO GLU ALA ILE LEU SEQRES 12 D 304 LYS ILE LYS HIS PHE TYR ILE MET GLY GLY ALA GLU ASN SEQRES 13 D 304 GLY LYS GLY ASN ILE THR PRO TYR GLY GLU PHE ASN TRP SEQRES 14 D 304 ARG ALA ASP PRO GLU ALA ALA GLN ILE VAL LEU GLN THR SEQRES 15 D 304 TYR PRO GLN TYR GLN THR THR ILE ALA SER TRP THR LEU SEQRES 16 D 304 ALA VAL PHE ASN SER PHE ASN ALA ASN ASP TYR ASP PHE SEQRES 17 D 304 PHE ASN LEU ASP GLY ASN LEU VAL ARG ARG PHE ILE ARG SEQRES 18 D 304 GLU THR TRP LYS PRO ILE ILE ALA PHE ASP GLY GLY ARG SEQRES 19 D 304 ILE CYS PRO ALA ASP PRO LEU ALA ALA PHE ILE ALA VAL SEQRES 20 D 304 TYR GLY ASP ARG ALA ILE LYS ARG ALA GLU ARG LEU HIS SEQRES 21 D 304 LEU SER MET VAL LEU GLU GLY GLU LYS LEU GLY MET SER SEQRES 22 D 304 LEU ALA GLU PRO ASP GLU LYS GLY CYS LEU VAL VAL LYS SEQRES 23 D 304 GLU CYS ASP ALA GLU LEU PHE VAL LYS ILE LEU ARG GLU SEQRES 24 D 304 LEU GLN ASP HIS GLN HET CA A 401 1 HET R1Y B 401 17 HET CA B 402 1 HET R1Y C 401 17 HET CA C 402 1 HET R1Y D 401 17 HET CA D 402 1 HETNAM CA CALCIUM ION HETNAM R1Y 1-BETA-D-RIBOFURANOSYL-1H-1,2,4-TRIAZOLE-3- HETNAM 2 R1Y CARBOXIMIDAMIDE FORMUL 5 CA 4(CA 2+) FORMUL 6 R1Y 3(C8 H13 N5 O4) HELIX 1 AA1 GLY A 10 ASN A 23 1 14 HELIX 2 AA2 SER A 39 GLY A 55 1 17 HELIX 3 AA3 ILE A 76 GLY A 81 1 6 HELIX 4 AA4 ASN A 89 PHE A 93 5 5 HELIX 5 AA5 HIS A 105 ILE A 117 1 13 HELIX 6 AA6 LEU A 128 ALA A 138 1 11 HELIX 7 AA7 ALA A 138 LEU A 143 1 6 HELIX 8 AA8 PHE A 167 ASP A 172 1 6 HELIX 9 AA9 ASP A 172 TYR A 183 1 12 HELIX 10 AB1 PRO A 184 TYR A 186 5 3 HELIX 11 AB2 SER A 192 ASN A 199 1 8 HELIX 12 AB3 ASN A 214 ASP A 231 1 18 HELIX 13 AB4 ASP A 239 GLY A 249 1 11 HELIX 14 AB5 ASP A 289 GLN A 301 1 13 HELIX 15 AB6 GLY B 10 ASN B 23 1 14 HELIX 16 AB7 SER B 39 GLY B 55 1 17 HELIX 17 AB8 HIS B 105 ILE B 117 1 13 HELIX 18 AB9 LEU B 128 ALA B 138 1 11 HELIX 19 AC1 ALA B 138 LEU B 143 1 6 HELIX 20 AC2 GLU B 166 ASP B 172 1 7 HELIX 21 AC3 ASP B 172 TYR B 183 1 12 HELIX 22 AC4 PRO B 184 TYR B 186 5 3 HELIX 23 AC5 SER B 192 ASN B 199 1 8 HELIX 24 AC6 ASN B 214 ASP B 231 1 18 HELIX 25 AC7 ALA B 238 GLY B 249 1 12 HELIX 26 AC8 ASP B 250 ALA B 252 5 3 HELIX 27 AC9 ASP B 289 GLN B 301 1 13 HELIX 28 AD1 GLY C 10 ALA C 22 1 13 HELIX 29 AD2 SER C 39 GLY C 55 1 17 HELIX 30 AD3 ASN C 89 PHE C 93 5 5 HELIX 31 AD4 HIS C 105 ILE C 117 1 13 HELIX 32 AD5 LEU C 128 ALA C 138 1 11 HELIX 33 AD6 ALA C 138 LEU C 143 1 6 HELIX 34 AD7 THR C 162 GLU C 166 5 5 HELIX 35 AD8 PHE C 167 ASP C 172 1 6 HELIX 36 AD9 ASP C 172 GLN C 181 1 10 HELIX 37 AE1 SER C 192 ASN C 199 1 8 HELIX 38 AE2 ASN C 214 ASP C 231 1 18 HELIX 39 AE3 PRO C 237 GLY C 249 1 13 HELIX 40 AE4 ASP C 289 LEU C 300 1 12 HELIX 41 AE5 GLY D 10 ASN D 23 1 14 HELIX 42 AE6 SER D 39 GLY D 55 1 17 HELIX 43 AE7 HIS D 105 ILE D 117 1 13 HELIX 44 AE8 LEU D 128 ALA D 138 1 11 HELIX 45 AE9 ALA D 138 LEU D 143 1 6 HELIX 46 AF1 GLU D 166 ALA D 171 1 6 HELIX 47 AF2 ASP D 172 TYR D 183 1 12 HELIX 48 AF3 PRO D 184 TYR D 186 5 3 HELIX 49 AF4 SER D 192 ASN D 199 1 8 HELIX 50 AF5 ASN D 214 ASP D 231 1 18 HELIX 51 AF6 PRO D 237 TYR D 248 1 12 HELIX 52 AF7 GLY D 249 ARG D 251 5 3 HELIX 53 AF8 ASP D 289 ASP D 302 1 14 SHEET 1 AA1 8 ILE A 61 PHE A 62 0 SHEET 2 AA1 8 GLU A 27 CYS A 33 1 N CYS A 33 O PHE A 62 SHEET 3 AA1 8 LYS A 2 THR A 7 1 N LEU A 3 O VAL A 29 SHEET 4 AA1 8 LEU A 120 CYS A 124 1 O LEU A 123 N TRP A 4 SHEET 5 AA1 8 HIS A 147 MET A 151 1 O TYR A 149 N CYS A 124 SHEET 6 AA1 8 THR A 188 ALA A 191 1 O THR A 189 N ILE A 150 SHEET 7 AA1 8 CYS A 282 CYS A 288 1 O LEU A 283 N THR A 188 SHEET 8 AA1 8 ILE A 253 LEU A 259 -1 N GLU A 257 O VAL A 284 SHEET 1 AA2 2 PHE A 201 ASN A 202 0 SHEET 2 AA2 2 ARG A 234 ILE A 235 -1 O ILE A 235 N PHE A 201 SHEET 1 AA3 2 SER A 262 MET A 263 0 SHEET 2 AA3 2 SER A 273 LEU A 274 -1 O LEU A 274 N SER A 262 SHEET 1 AA4 9 ILE B 61 GLY B 63 0 SHEET 2 AA4 9 GLU B 27 CYS B 33 1 N CYS B 33 O PHE B 62 SHEET 3 AA4 9 LYS B 2 THR B 7 1 N THR B 7 O SER B 32 SHEET 4 AA4 9 LEU B 120 LEU B 125 1 O ASN B 121 N LYS B 2 SHEET 5 AA4 9 HIS B 147 MET B 151 1 O TYR B 149 N ILE B 122 SHEET 6 AA4 9 THR B 188 ALA B 191 1 O THR B 189 N PHE B 148 SHEET 7 AA4 9 CYS B 282 GLU B 287 1 O LEU B 283 N THR B 188 SHEET 8 AA4 9 ARG B 255 MET B 263 -1 N LEU B 259 O CYS B 282 SHEET 9 AA4 9 SER B 273 PRO B 277 -1 O GLU B 276 N HIS B 260 SHEET 1 AA5 2 PHE B 201 ASN B 202 0 SHEET 2 AA5 2 ARG B 234 ILE B 235 -1 O ILE B 235 N PHE B 201 SHEET 1 AA6 9 ILE C 61 GLY C 63 0 SHEET 2 AA6 9 GLU C 27 CYS C 33 1 N ILE C 31 O PHE C 62 SHEET 3 AA6 9 LYS C 2 THR C 7 1 N THR C 7 O SER C 32 SHEET 4 AA6 9 ASN C 121 CYS C 124 1 O ASN C 121 N TRP C 4 SHEET 5 AA6 9 HIS C 147 MET C 151 1 O TYR C 149 N CYS C 124 SHEET 6 AA6 9 THR C 188 ALA C 191 1 O THR C 189 N PHE C 148 SHEET 7 AA6 9 CYS C 282 CYS C 288 1 O LEU C 283 N THR C 188 SHEET 8 AA6 9 ILE C 253 MET C 263 -1 N GLU C 257 O VAL C 284 SHEET 9 AA6 9 SER C 273 PRO C 277 -1 O GLU C 276 N HIS C 260 SHEET 1 AA7 8 ILE D 61 GLY D 63 0 SHEET 2 AA7 8 GLU D 27 CYS D 33 1 N CYS D 33 O PHE D 62 SHEET 3 AA7 8 LYS D 2 THR D 7 1 N ILE D 5 O SER D 32 SHEET 4 AA7 8 LEU D 120 LEU D 125 1 O LEU D 125 N ASP D 6 SHEET 5 AA7 8 HIS D 147 MET D 151 1 O TYR D 149 N CYS D 124 SHEET 6 AA7 8 THR D 188 ALA D 191 1 O ALA D 191 N ILE D 150 SHEET 7 AA7 8 CYS D 282 CYS D 288 1 O VAL D 285 N ILE D 190 SHEET 8 AA7 8 ILE D 253 LEU D 259 -1 N GLU D 257 O VAL D 284 SHEET 1 AA8 2 PHE D 201 ASN D 202 0 SHEET 2 AA8 2 ARG D 234 ILE D 235 -1 O ILE D 235 N PHE D 201 LINK OD1 ASP A 8 CA CA A 401 1555 1555 2.47 LINK OD2 ASP A 8 CA CA A 401 1555 1555 3.12 LINK OD1 ASP A 13 CA CA A 401 1555 1555 2.80 LINK OD2 ASP A 13 CA CA A 401 1555 1555 2.83 LINK O LEU A 125 CA CA A 401 1555 1555 2.59 LINK OD1 ASP B 8 CA CA B 402 1555 1555 2.29 LINK OD1 ASP B 13 CA CA B 402 1555 1555 2.52 LINK OD2 ASP B 13 CA CA B 402 1555 1555 2.81 LINK O LEU B 125 CA CA B 402 1555 1555 2.80 LINK OD2 ASP B 239 CA CA B 402 1555 1555 2.58 LINK O13 R1Y B 401 CA CA B 402 1555 1555 2.28 LINK O14 R1Y B 401 CA CA B 402 1555 1555 2.17 LINK OD1 ASP C 8 CA CA C 402 1555 1555 2.70 LINK OD1 ASP C 13 CA CA C 402 1555 1555 2.95 LINK O LEU C 125 CA CA C 402 1555 1555 2.57 LINK O13 R1Y C 401 CA CA C 402 1555 1555 2.96 LINK O14 R1Y C 401 CA CA C 402 1555 1555 2.11 LINK OD1 ASP D 8 CA CA D 402 1555 1555 2.52 LINK OD1 ASP D 13 CA CA D 402 1555 1555 2.65 LINK OD2 ASP D 13 CA CA D 402 1555 1555 2.47 LINK O LEU D 125 CA CA D 402 1555 1555 2.46 LINK OD2 ASP D 239 CA CA D 402 1555 1555 2.42 LINK O13 R1Y D 401 CA CA D 402 1555 1555 2.25 LINK O14 R1Y D 401 CA CA D 402 1555 1555 2.25 CRYST1 50.406 75.382 88.856 65.47 80.79 87.32 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019839 -0.000928 -0.003111 0.00000 SCALE2 0.000000 0.013280 -0.006032 0.00000 SCALE3 0.000000 0.000000 0.012522 0.00000