HEADER VIRAL PROTEIN/IMMUNE SYSTEM 16-JUN-22 8DCE TITLE SARS-COV-2 RECEPTOR-BINDING DOMAIN SPEEDESIGN IMMUNOGEN 1 BOUND TO TITLE 2 C144 SCFV COMPND MOL_ID: 1; COMPND 2 MOLECULE: C144 SCFV; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: RBD SPEEDESIGN IMMUNOGEN 1 (UNP RESIDUES 333-526); COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 13 2; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 GENE: S, 2; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS IMMUNOGEN, ANTIGEN, DESIGN, VACCINE, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.K.TANG,N.H.TOLIA REVDAT 3 18-OCT-23 8DCE 1 REMARK REVDAT 2 05-OCT-22 8DCE 1 JRNL REVDAT 1 29-JUN-22 8DCE 0 JRNL AUTH T.H.DICKEY,W.K.TANG,B.BUTLER,T.OUAHES,S.ORR-GONZALEZ, JRNL AUTH 2 N.D.SALINAS,L.E.LAMBERT,N.H.TOLIA JRNL TITL DESIGN OF THE SARS-COV-2 RBD VACCINE ANTIGEN IMPROVES JRNL TITL 2 NEUTRALIZING ANTIBODY RESPONSE. JRNL REF SCI ADV V. 8 Q8276 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36103542 JRNL DOI 10.1126/SCIADV.ABQ8276 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7800 - 4.8000 0.99 2722 150 0.1868 0.2210 REMARK 3 2 4.8000 - 3.8200 1.00 2628 145 0.1484 0.1727 REMARK 3 3 3.8200 - 3.3400 1.00 2619 145 0.1672 0.1720 REMARK 3 4 3.3400 - 3.0300 1.00 2587 143 0.1755 0.1817 REMARK 3 5 3.0300 - 2.8200 1.00 2594 143 0.1727 0.1813 REMARK 3 6 2.8200 - 2.6500 1.00 2584 142 0.1776 0.2067 REMARK 3 7 2.6500 - 2.5200 1.00 2596 143 0.1864 0.2100 REMARK 3 8 2.5200 - 2.4100 1.00 2564 142 0.1832 0.2333 REMARK 3 9 2.4100 - 2.3200 1.00 2538 140 0.1881 0.2254 REMARK 3 10 2.3200 - 2.2400 1.00 2606 143 0.1895 0.2463 REMARK 3 11 2.2400 - 2.1700 1.00 2531 140 0.1850 0.2118 REMARK 3 12 2.1700 - 2.1100 1.00 2562 141 0.1969 0.2508 REMARK 3 13 2.1100 - 2.0500 1.00 2562 142 0.2115 0.2861 REMARK 3 14 2.0500 - 2.0000 0.99 2554 141 0.2655 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3477 REMARK 3 ANGLE : 0.530 4724 REMARK 3 CHIRALITY : 0.044 497 REMARK 3 PLANARITY : 0.004 614 REMARK 3 DIHEDRAL : 12.310 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2771 5.3167 -33.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2100 REMARK 3 T33: 0.2970 T12: 0.0424 REMARK 3 T13: 0.0118 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.9673 L22: 2.1085 REMARK 3 L33: 4.8521 L12: 0.0015 REMARK 3 L13: 1.2296 L23: -0.4610 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: 0.0231 S13: 0.1253 REMARK 3 S21: -0.1005 S22: -0.0527 S23: 0.2792 REMARK 3 S31: -0.1643 S32: -0.5623 S33: -0.0869 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7994 1.8552 -38.6493 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.2248 REMARK 3 T33: 0.2419 T12: 0.0259 REMARK 3 T13: 0.0303 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.4579 L22: 2.8738 REMARK 3 L33: 2.2763 L12: 1.5239 REMARK 3 L13: 1.0066 L23: 0.3027 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.0346 S13: -0.0178 REMARK 3 S21: -0.3026 S22: 0.0100 S23: -0.0857 REMARK 3 S31: -0.2121 S32: -0.0902 S33: -0.0151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4055 9.9841 -37.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.1921 REMARK 3 T33: 0.2925 T12: -0.0013 REMARK 3 T13: -0.0253 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.3037 L22: 3.3878 REMARK 3 L33: 7.2241 L12: -0.3611 REMARK 3 L13: -0.8532 L23: 0.9009 REMARK 3 S TENSOR REMARK 3 S11: -0.1891 S12: -0.0229 S13: 0.3345 REMARK 3 S21: -0.0967 S22: 0.0166 S23: 0.1273 REMARK 3 S31: -0.4342 S32: -0.1139 S33: 0.0629 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 83 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1024 3.0949 -44.6235 REMARK 3 T TENSOR REMARK 3 T11: 0.2644 T22: 0.1965 REMARK 3 T33: 0.1988 T12: 0.0099 REMARK 3 T13: 0.0330 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.1043 L22: 4.8650 REMARK 3 L33: 4.4646 L12: -1.0071 REMARK 3 L13: 2.6521 L23: -1.7279 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.3137 S13: 0.1826 REMARK 3 S21: -0.4830 S22: -0.0644 S23: -0.1367 REMARK 3 S31: -0.3726 S32: 0.0430 S33: 0.0525 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 98 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7794 -4.5231 -20.3931 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.2765 REMARK 3 T33: 0.3170 T12: 0.0186 REMARK 3 T13: 0.0088 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.2359 L22: 1.8011 REMARK 3 L33: 3.9964 L12: -0.1638 REMARK 3 L13: 2.1065 L23: -1.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.3532 S13: -0.2575 REMARK 3 S21: 0.1844 S22: 0.0366 S23: -0.1204 REMARK 3 S31: -0.1428 S32: -0.2400 S33: 0.0784 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 118 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9715 -5.0673 -40.9505 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.2081 REMARK 3 T33: 0.1644 T12: -0.0457 REMARK 3 T13: 0.0323 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 4.6852 L22: 4.5190 REMARK 3 L33: 1.1484 L12: -2.3710 REMARK 3 L13: 2.2816 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.1863 S13: 0.1728 REMARK 3 S21: -0.2378 S22: -0.1432 S23: -0.0300 REMARK 3 S31: -0.0021 S32: -0.3387 S33: 0.0331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 165 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3957 -17.1159 -33.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.2024 REMARK 3 T33: 0.2355 T12: 0.0463 REMARK 3 T13: -0.0035 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.4788 L22: 4.4908 REMARK 3 L33: 0.9253 L12: 1.9940 REMARK 3 L13: 0.3336 L23: 0.7099 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0230 S13: -0.1131 REMARK 3 S21: 0.1883 S22: 0.0550 S23: -0.3274 REMARK 3 S31: 0.1762 S32: 0.0845 S33: -0.0294 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 234 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4927 -18.4449 -36.1929 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2307 REMARK 3 T33: 0.2263 T12: 0.0594 REMARK 3 T13: 0.0373 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.3864 L22: 8.1984 REMARK 3 L33: 1.9415 L12: 1.9593 REMARK 3 L13: 1.6247 L23: 1.4951 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.0675 S13: 0.0317 REMARK 3 S21: 0.2611 S22: 0.0316 S23: 0.4791 REMARK 3 S31: 0.0505 S32: -0.1676 S33: -0.1231 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 250 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6795 -13.1614 -40.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.2084 T22: 0.2197 REMARK 3 T33: 0.2304 T12: 0.0245 REMARK 3 T13: 0.0455 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.0368 L22: 6.0525 REMARK 3 L33: 1.1698 L12: 0.3172 REMARK 3 L13: -0.3214 L23: -0.5859 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: 0.0356 S13: -0.0204 REMARK 3 S21: -0.3290 S22: 0.0989 S23: 0.2159 REMARK 3 S31: 0.0399 S32: 0.0436 S33: -0.0229 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3047 25.2538 2.7841 REMARK 3 T TENSOR REMARK 3 T11: 0.8458 T22: 0.4171 REMARK 3 T33: 0.3710 T12: 0.2539 REMARK 3 T13: -0.0557 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 1.1333 L22: 2.1214 REMARK 3 L33: 4.0256 L12: -0.2586 REMARK 3 L13: -0.6846 L23: 2.5727 REMARK 3 S TENSOR REMARK 3 S11: 0.1062 S12: -0.0375 S13: 0.3620 REMARK 3 S21: -0.2379 S22: -0.1616 S23: 0.2220 REMARK 3 S31: -1.8754 S32: -1.0960 S33: 0.2300 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9461 14.8648 2.9568 REMARK 3 T TENSOR REMARK 3 T11: 0.3960 T22: 0.2311 REMARK 3 T33: 0.2331 T12: 0.0019 REMARK 3 T13: -0.0025 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.0025 L22: 1.9241 REMARK 3 L33: 7.2253 L12: -1.1094 REMARK 3 L13: -0.4474 L23: 1.6958 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.1399 S13: -0.0250 REMARK 3 S21: 0.3003 S22: -0.1578 S23: -0.0325 REMARK 3 S31: -0.4129 S32: -0.3566 S33: 0.2233 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7853 10.7669 -15.1050 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.4325 REMARK 3 T33: 0.2634 T12: 0.0247 REMARK 3 T13: -0.0358 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 4.1058 L22: 2.8096 REMARK 3 L33: 7.0906 L12: 0.0140 REMARK 3 L13: -0.0567 L23: 0.9802 REMARK 3 S TENSOR REMARK 3 S11: -0.3177 S12: 0.3010 S13: -0.1473 REMARK 3 S21: -0.2867 S22: -0.1207 S23: 0.3034 REMARK 3 S31: -0.2056 S32: -1.1101 S33: 0.3448 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0415 10.4608 -19.7617 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.1763 REMARK 3 T33: 0.3238 T12: -0.0194 REMARK 3 T13: -0.0344 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.5222 L22: 2.6135 REMARK 3 L33: 7.6993 L12: 0.1259 REMARK 3 L13: -1.2698 L23: 1.8175 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.0242 S13: 0.0100 REMARK 3 S21: 0.0591 S22: -0.0492 S23: -0.3006 REMARK 3 S31: -0.4048 S32: 0.2777 S33: 0.0752 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1247 5.5578 -9.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: 0.9523 REMARK 3 T33: 0.5637 T12: -0.1976 REMARK 3 T13: 0.1563 T23: -0.3436 REMARK 3 L TENSOR REMARK 3 L11: 2.6675 L22: 1.3404 REMARK 3 L33: 1.5688 L12: 1.8745 REMARK 3 L13: -2.0333 L23: -1.4162 REMARK 3 S TENSOR REMARK 3 S11: -0.2535 S12: 0.1286 S13: -0.6295 REMARK 3 S21: -0.0376 S22: -0.5317 S23: 0.6294 REMARK 3 S31: 0.5008 S32: -2.1972 S33: 0.6606 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 507 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6033 24.6031 6.5906 REMARK 3 T TENSOR REMARK 3 T11: 0.7470 T22: 0.2981 REMARK 3 T33: 0.3142 T12: 0.0106 REMARK 3 T13: -0.0598 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.8091 L22: 3.5693 REMARK 3 L33: 6.5930 L12: 0.3723 REMARK 3 L13: -0.3095 L23: 2.5964 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: -0.1334 S13: 0.0218 REMARK 3 S21: 0.2022 S22: 0.0229 S23: -0.5187 REMARK 3 S31: -1.1625 S32: 0.2492 S33: 0.0484 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.730 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7BWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 16% PEG8000, 20% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.81500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.59000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.81500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.59000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.81500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.59000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.81500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H -1 REMARK 465 THR H 0 REMARK 465 GLY H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 GLY H 135 REMARK 465 SER H 136 REMARK 465 GLY H 137 REMARK 465 GLY H 138 REMARK 465 GLY H 139 REMARK 465 GLY H 140 REMARK 465 SER H 141 REMARK 465 GLY H 142 REMARK 465 GLY H 143 REMARK 465 GLY H 144 REMARK 465 GLY H 145 REMARK 465 SER H 146 REMARK 465 GLY H 147 REMARK 465 GLY H 148 REMARK 465 GLY H 149 REMARK 465 GLY H 150 REMARK 465 SER H 151 REMARK 465 GLY H 152 REMARK 465 GLY H 153 REMARK 465 GLY H 154 REMARK 465 GLY H 155 REMARK 465 SER H 156 REMARK 465 GLN H 157 REMARK 465 HIS H 269 REMARK 465 HIS H 270 REMARK 465 HIS H 271 REMARK 465 HIS H 272 REMARK 465 HIS H 273 REMARK 465 HIS H 274 REMARK 465 GLU A 330 REMARK 465 THR A 331 REMARK 465 GLY A 332 REMARK 465 MET A 333 REMARK 465 GLY A 528 REMARK 465 GLY A 529 REMARK 465 GLY A 530 REMARK 465 GLY A 531 REMARK 465 SER A 532 REMARK 465 LYS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 357 OE1 GLN A 394 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 112 148.13 -171.73 REMARK 500 ARG H 115 74.06 -115.11 REMARK 500 ASP H 184 -91.60 -140.28 REMARK 500 ASN H 189 48.19 -94.82 REMARK 500 TYR H 190 50.46 -119.56 REMARK 500 VAL H 209 -52.63 77.68 REMARK 500 ASN A 422 -55.42 -129.07 REMARK 500 ASP A 428 34.21 -92.44 REMARK 500 THR A 523 -8.58 -140.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DCE H -1 274 PDB 8DCE 8DCE -1 274 DBREF 8DCE A 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8DCE GLU A 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE THR A 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE GLY A 332 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE MET A 333 UNP P0DTC2 THR 333 ENGINEERED MUTATION SEQADV 8DCE PRO A 348 UNP P0DTC2 ALA 348 ENGINEERED MUTATION SEQADV 8DCE TYR A 362 UNP P0DTC2 VAL 362 ENGINEERED MUTATION SEQADV 8DCE TYR A 363 UNP P0DTC2 ALA 363 ENGINEERED MUTATION SEQADV 8DCE GLN A 394 UNP P0DTC2 ASN 394 ENGINEERED MUTATION SEQADV 8DCE PHE A 396 UNP P0DTC2 TYR 396 ENGINEERED MUTATION SEQADV 8DCE THR A 468 UNP P0DTC2 ILE 468 ENGINEERED MUTATION SEQADV 8DCE ASP A 519 UNP P0DTC2 HIS 519 ENGINEERED MUTATION SEQADV 8DCE PRO A 522 UNP P0DTC2 ALA 522 ENGINEERED MUTATION SEQADV 8DCE THR A 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE GLY A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE GLY A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE SER A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE LYS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8DCE HIS A 539 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 276 GLU THR GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 H 276 ILE GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 H 276 SER GLY PHE THR VAL SER ASN ASN TYR MET SER TRP VAL SEQRES 4 H 276 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL SEQRES 5 H 276 ILE TYR SER GLY GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 H 276 LYS GLY ARG PHE THR ILE SER ARG ASP LYS SER LYS ASN SEQRES 7 H 276 THR LEU TYR LEU GLN MET ASN ARG LEU ARG ALA GLU ASP SEQRES 8 H 276 THR ALA VAL TYR TYR CYS ALA ARG GLU GLY GLU VAL GLU SEQRES 9 H 276 GLY TYR ASN ASP PHE TRP SER GLY TYR SER ARG ASP ARG SEQRES 10 H 276 TYR TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 11 H 276 VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 12 H 276 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 13 H 276 GLY SER GLN SER ALA LEU THR GLN PRO ALA SER VAL SER SEQRES 14 H 276 GLY SER PRO GLY GLN SER ILE THR ILE SER CYS THR GLY SEQRES 15 H 276 THR SER SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP SEQRES 16 H 276 TYR GLN GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE SEQRES 17 H 276 TYR ASP VAL SER ASN ARG PRO SER GLY VAL SER ASN ARG SEQRES 18 H 276 PHE SER GLY SER LYS SER GLY ASN THR ALA SER LEU THR SEQRES 19 H 276 ILE SER GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR SEQRES 20 H 276 CYS SER SER TYR THR SER SER SER THR ARG VAL PHE GLY SEQRES 21 H 276 THR GLY THR LYS VAL THR VAL LEU GLY THR HIS HIS HIS SEQRES 22 H 276 HIS HIS HIS SEQRES 1 A 210 GLU THR GLY MET ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 A 210 ASN ALA THR ARG PHE PRO SER VAL TYR ALA TRP ASN ARG SEQRES 3 A 210 LYS ARG ILE SER ASN CYS TYR TYR ASP TYR SER VAL LEU SEQRES 4 A 210 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 A 210 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR GLN SEQRES 6 A 210 VAL PHE ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 A 210 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 A 210 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 A 210 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 A 210 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 A 210 ASN LEU LYS PRO PHE GLU ARG ASP THR SER THR GLU ILE SEQRES 12 A 210 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 A 210 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 A 210 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 A 210 VAL LEU SER PHE GLU LEU LEU ASP ALA PRO PRO THR VAL SEQRES 16 A 210 CYS GLY THR GLY GLY GLY GLY SER LYS HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS FORMUL 3 HOH *226(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ARG H 86 THR H 90 5 5 HELIX 3 AA3 GLN H 237 GLU H 241 5 5 HELIX 4 AA4 PHE A 338 ASN A 343 1 6 HELIX 5 AA5 SER A 349 TRP A 353 5 5 HELIX 6 AA6 TYR A 365 ASN A 370 1 6 HELIX 7 AA7 SER A 383 ASP A 389 5 7 HELIX 8 AA8 ASP A 405 ILE A 410 5 6 HELIX 9 AA9 GLY A 416 ASN A 422 1 7 HELIX 10 AB1 SER A 438 SER A 443 1 6 HELIX 11 AB2 GLY A 502 TYR A 505 5 4 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 LEU H 11 ILE H 12 0 SHEET 2 AA2 6 THR H 125 VAL H 129 1 O THR H 128 N ILE H 12 SHEET 3 AA2 6 ALA H 91 GLU H 98 -1 N TYR H 93 O THR H 125 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N VAL H 50 SHEET 1 AA3 4 LEU H 11 ILE H 12 0 SHEET 2 AA3 4 THR H 125 VAL H 129 1 O THR H 128 N ILE H 12 SHEET 3 AA3 4 ALA H 91 GLU H 98 -1 N TYR H 93 O THR H 125 SHEET 4 AA3 4 PHE H 118 TRP H 121 -1 O TYR H 120 N ARG H 97 SHEET 1 AA4 5 SER H 165 GLY H 168 0 SHEET 2 AA4 5 THR H 261 VAL H 265 1 O THR H 264 N VAL H 166 SHEET 3 AA4 5 ALA H 242 TYR H 249 -1 N ALA H 242 O VAL H 263 SHEET 4 AA4 5 VAL H 191 GLN H 196 -1 N TYR H 194 O TYR H 245 SHEET 5 AA4 5 LYS H 203 ILE H 206 -1 O MET H 205 N TRP H 193 SHEET 1 AA5 4 SER H 165 GLY H 168 0 SHEET 2 AA5 4 THR H 261 VAL H 265 1 O THR H 264 N VAL H 166 SHEET 3 AA5 4 ALA H 242 TYR H 249 -1 N ALA H 242 O VAL H 263 SHEET 4 AA5 4 ARG H 255 PHE H 257 -1 O VAL H 256 N SER H 248 SHEET 1 AA6 3 ILE H 174 THR H 179 0 SHEET 2 AA6 3 THR H 228 ILE H 233 -1 O LEU H 231 N ILE H 176 SHEET 3 AA6 3 PHE H 220 SER H 225 -1 N SER H 221 O THR H 232 SHEET 1 AA7 5 ASN A 354 ILE A 358 0 SHEET 2 AA7 5 GLN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA7 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA7 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA7 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA8 3 CYS A 361 TYR A 363 0 SHEET 2 AA8 3 VAL A 524 GLY A 526 1 O CYS A 525 N TYR A 363 SHEET 3 AA8 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA9 2 LEU A 452 ARG A 454 0 SHEET 2 AA9 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AB1 2 TYR A 473 GLN A 474 0 SHEET 2 AB1 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 2 CYS H 178 CYS H 246 1555 1555 2.04 SSBOND 3 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 4 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 5 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 6 CYS A 480 CYS A 488 1555 1555 2.04 CRYST1 81.630 97.310 141.180 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007083 0.00000