HEADER VIRAL PROTEIN,HYDROLASE/INHIBITOR 17-JUN-22 8DDB TITLE THE N-TERMINAL DOMAIN OF PA ENDONUCLEASE FROM THE INFLUENZA H1N1 VIRAL TITLE 2 POLYMERASE IN COMPLEX WITH 4-(BENZYLOXY)-6-BROMO-3-HYDROXYPICOLINIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/CALIFORNIA/04/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS DRUG DISCOVERY, METAL-BINDING PHARMACOPHORE, ISOSTERES, INFLUENZA KEYWDS 2 ENDONUCLEASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.KOHLBRAND,R.W.STOKES,J.KARGES,H.SEO,B.SANKARAN,S.M.COHEN REVDAT 3 25-OCT-23 8DDB 1 REMARK REVDAT 2 01-FEB-23 8DDB 1 JRNL REVDAT 1 21-DEC-22 8DDB 0 JRNL AUTH R.W.STOKES,A.J.KOHLBRAND,H.SEO,B.SANKARAN,J.KARGES,S.M.COHEN JRNL TITL CARBOXYLIC ACID ISOSTERE DERIVATIVES OF HYDROXYPYRIDINONES JRNL TITL 2 AS CORE SCAFFOLDS FOR INFLUENZA ENDONUCLEASE INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 14 75 2023 JRNL REFN ISSN 1948-5875 JRNL PMID 36655124 JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00434 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.0200 - 5.3000 1.00 1296 144 0.1783 0.1808 REMARK 3 2 5.3000 - 4.2100 1.00 1290 137 0.1374 0.1898 REMARK 3 3 4.2100 - 3.6800 1.00 1289 145 0.1492 0.1970 REMARK 3 4 3.6800 - 3.3400 1.00 1296 147 0.1786 0.2837 REMARK 3 5 3.3400 - 3.1000 1.00 1294 143 0.2308 0.2793 REMARK 3 6 3.1000 - 2.9200 1.00 1291 141 0.2252 0.2924 REMARK 3 7 2.9200 - 2.7700 1.00 1295 145 0.2420 0.3130 REMARK 3 8 2.7700 - 2.6500 1.00 1290 142 0.2585 0.2536 REMARK 3 9 2.6500 - 2.5500 1.00 1276 144 0.2512 0.3857 REMARK 3 10 2.5500 - 2.4600 1.00 1295 146 0.2640 0.2970 REMARK 3 11 2.4600 - 2.3800 1.00 1275 141 0.2426 0.3568 REMARK 3 12 2.3800 - 2.3200 1.00 1298 138 0.2655 0.2422 REMARK 3 13 2.3200 - 2.2600 1.00 1300 144 0.2797 0.3229 REMARK 3 14 2.2600 - 2.2000 1.00 1300 141 0.2944 0.3314 REMARK 3 15 2.2000 - 2.1500 1.00 1295 146 0.2961 0.3764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.284 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1539 REMARK 3 ANGLE : 0.511 2065 REMARK 3 CHIRALITY : 0.039 216 REMARK 3 PLANARITY : 0.005 265 REMARK 3 DIHEDRAL : 6.833 199 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5352 7.6628 -20.4324 REMARK 3 T TENSOR REMARK 3 T11: 0.8359 T22: 0.5108 REMARK 3 T33: 0.6545 T12: 0.0741 REMARK 3 T13: -0.0169 T23: -0.1703 REMARK 3 L TENSOR REMARK 3 L11: 8.7834 L22: 4.2191 REMARK 3 L33: 10.1857 L12: 5.2412 REMARK 3 L13: 0.5578 L23: -1.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.2345 S12: 1.4298 S13: -0.9122 REMARK 3 S21: -0.9687 S22: 0.5877 S23: 0.4284 REMARK 3 S31: 0.4667 S32: 0.1777 S33: -0.1854 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2675 13.0452 -8.1013 REMARK 3 T TENSOR REMARK 3 T11: 0.5879 T22: 0.3249 REMARK 3 T33: 0.4430 T12: -0.0013 REMARK 3 T13: 0.0499 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 6.8743 L22: 1.2807 REMARK 3 L33: 2.3650 L12: 0.4614 REMARK 3 L13: -1.0360 L23: -0.0668 REMARK 3 S TENSOR REMARK 3 S11: 0.2394 S12: -0.1405 S13: -0.0290 REMARK 3 S21: 0.3038 S22: -0.0907 S23: 0.3658 REMARK 3 S31: -0.0530 S32: -0.2099 S33: -0.1295 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4000 19.9509 -2.8308 REMARK 3 T TENSOR REMARK 3 T11: 0.6523 T22: 0.3218 REMARK 3 T33: 0.4442 T12: -0.0307 REMARK 3 T13: 0.0478 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 7.9150 L22: 0.8406 REMARK 3 L33: 1.4634 L12: -0.3517 REMARK 3 L13: 0.4022 L23: -0.3208 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: -0.3330 S13: 0.5447 REMARK 3 S21: 0.2933 S22: -0.0972 S23: 0.1838 REMARK 3 S31: -0.1700 S32: -0.0550 S33: -0.0849 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9080 19.9608 -15.6305 REMARK 3 T TENSOR REMARK 3 T11: 0.6255 T22: 0.5682 REMARK 3 T33: 0.4858 T12: 0.0235 REMARK 3 T13: -0.0025 T23: 0.1093 REMARK 3 L TENSOR REMARK 3 L11: 9.6366 L22: 3.2677 REMARK 3 L33: 2.7414 L12: -5.4075 REMARK 3 L13: -4.9946 L23: 2.6576 REMARK 3 S TENSOR REMARK 3 S11: 0.3768 S12: 0.5862 S13: -0.7581 REMARK 3 S21: -0.0043 S22: -0.2333 S23: 0.9371 REMARK 3 S31: -0.4736 S32: 0.4183 S33: -0.0804 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 66.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6E6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG4000, 100 MM TRIS, PH 8.35, 200 REMARK 280 -220 MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.07200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.53600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.07200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.53600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.07200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.53600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 81.07200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.53600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 454 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 0 -73.16 62.75 REMARK 500 HIS A 74 88.94 62.96 REMARK 500 LYS A 139 29.98 49.59 REMARK 500 LYS A 158 19.56 59.08 REMARK 500 THR A 162 -62.22 68.06 REMARK 500 GLU A 195 45.57 26.17 REMARK 500 ARG A 196 45.77 -86.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 480 DISTANCE = 6.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 100.6 REMARK 620 3 GLU A 119 OE2 168.9 86.7 REMARK 620 4 ILE A 120 O 82.8 90.3 88.8 REMARK 620 5 R6X A 304 O01 96.1 98.8 91.0 170.9 REMARK 620 6 R6X A 304 O12 81.8 177.6 91.0 90.3 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 94.4 REMARK 620 3 R6X A 304 O01 104.0 83.5 REMARK 620 4 R6X A 304 O05 101.5 162.6 85.6 REMARK 620 5 HOH A 404 O 171.6 80.0 81.7 85.0 REMARK 620 6 HOH A 436 O 89.4 99.5 166.0 87.9 85.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CTF RELATED DB: PDB REMARK 900 RELATED ID: 7V04 RELATED DB: PDB REMARK 900 RELATED ID: 8DAL RELATED DB: PDB DBREF 8DDB A 1 183 UNP C3W5S0 C3W5S0_I09A0 1 183 SEQADV 8DDB MET A -5 UNP C3W5S0 INITIATING METHIONINE SEQADV 8DDB GLY A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB SER A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB ALA A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB A UNP C3W5S0 HIS 52 DELETION SEQADV 8DDB A UNP C3W5S0 PHE 53 DELETION SEQADV 8DDB A UNP C3W5S0 ILE 54 DELETION SEQADV 8DDB A UNP C3W5S0 ASP 55 DELETION SEQADV 8DDB A UNP C3W5S0 GLU 56 DELETION SEQADV 8DDB A UNP C3W5S0 ARG 57 DELETION SEQADV 8DDB A UNP C3W5S0 GLU 59 DELETION SEQADV 8DDB A UNP C3W5S0 SER 60 DELETION SEQADV 8DDB A UNP C3W5S0 ILE 61 DELETION SEQADV 8DDB A UNP C3W5S0 ILE 62 DELETION SEQADV 8DDB A UNP C3W5S0 VAL 63 DELETION SEQADV 8DDB A UNP C3W5S0 GLU 64 DELETION SEQADV 8DDB GLU A 73 UNP C3W5S0 LYS 73 CONFLICT SEQADV 8DDB SER A 184 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB ARG A 185 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB SER A 186 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB LEU A 187 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB TRP A 188 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB ASP A 189 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB SER A 190 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB PHE A 191 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB ARG A 192 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB GLN A 193 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB SER A 194 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB GLU A 195 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB ARG A 196 UNP C3W5S0 EXPRESSION TAG SEQADV 8DDB GLU A 197 UNP C3W5S0 EXPRESSION TAG SEQRES 1 A 191 MET GLY SER GLY SER ALA MET GLU ASP PHE VAL ARG GLN SEQRES 2 A 191 CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS ALA SEQRES 3 A 191 MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR ASN SEQRES 4 A 191 LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS PHE SEQRES 5 A 191 MET TYR SER ASP PHE GLY SER GLY ASP PRO ASN ALA LEU SEQRES 6 A 191 LEU GLU HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG SEQRES 7 A 191 ILE MET ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR SEQRES 8 A 191 THR GLY VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR SEQRES 9 A 191 ASP TYR LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR SEQRES 10 A 191 ARG ARG GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN SEQRES 11 A 191 LYS ILE LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER SEQRES 12 A 191 PHE THR GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR SEQRES 13 A 191 LEU ASP GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU SEQRES 14 A 191 PHE THR ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP SEQRES 15 A 191 ASP SER PHE ARG GLN SER GLU ARG GLU HET MN A 301 1 HET MN A 302 1 HET ACT A 303 7 HET R6X A 304 14 HET SO4 A 305 5 HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION HETNAM R6X 6-BROMO-3-HYDROXY-4-OXO-1,4-DIHYDROPYRIDINE-2- HETNAM 2 R6X CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 R6X C6 H4 BR N O4 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *80(H2 O) HELIX 1 AA1 ALA A 0 PHE A 9 1 10 HELIX 2 AA2 ASN A 10 GLY A 25 1 16 HELIX 3 AA3 GLU A 31 PHE A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 SER A 194 1 8 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ILE A 118 N LEU A 109 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.29 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.28 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.09 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.19 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.28 LINK O ILE A 120 MN MN A 301 1555 1555 2.18 LINK MN MN A 301 O01 R6X A 304 1555 1555 2.16 LINK MN MN A 301 O12 R6X A 304 1555 1555 2.14 LINK MN MN A 302 O01 R6X A 304 1555 1555 2.10 LINK MN MN A 302 O05 R6X A 304 1555 1555 2.01 LINK MN MN A 302 O HOH A 404 1555 1555 2.46 LINK MN MN A 302 O HOH A 436 1555 1555 2.34 CRYST1 76.228 76.228 121.608 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013119 0.007574 0.000000 0.00000 SCALE2 0.000000 0.015148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008223 0.00000