HEADER OXIDOREDUCTASE 19-JUN-22 8DE5 TITLE STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM TITLE 2 PARACOCCIDIOIDES LUTZII COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAPDH; COMPND 5 EC: 1.2.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCIDIOIDES LUTZII PB01; SOURCE 3 ORGANISM_TAXID: 502779; SOURCE 4 STRAIN: ATCC MYA-826 / PB01; SOURCE 5 GENE: GPD, PAAG_08468; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, PARACOCCIDIOIDES LUTZII, KEYWDS 2 PARACOCCIDIOIDOMYCOSIS, ALDONIC SUGAR ACID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HERNANDEZ-PRIETO,V.P.MARTINI,J.IULEK REVDAT 4 06-DEC-23 8DE5 1 JRNL REVDAT 3 25-OCT-23 8DE5 1 REMARK REVDAT 2 27-SEP-23 8DE5 1 JRNL REVDAT 1 21-JUN-23 8DE5 0 JRNL AUTH J.H.HERNANDEZ-PRIETO,V.P.MARTINI,J.IULEK JRNL TITL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM JRNL TITL 2 PARACOCCIDIOIDES LUTZII IN COMPLEX WITH AN ALDONIC SUGAR JRNL TITL 3 ACID. JRNL REF BIOCHIMIE V. 218 20 2023 JRNL REFN ISSN 0300-9084 JRNL PMID 37709188 JRNL DOI 10.1016/J.BIOCHI.2023.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 83.9400 - 4.8700 1.00 2722 139 0.1458 0.1609 REMARK 3 2 4.8700 - 3.8700 1.00 2571 141 0.1130 0.1437 REMARK 3 3 3.8600 - 3.3800 1.00 2580 108 0.1335 0.1730 REMARK 3 4 3.3800 - 3.0700 1.00 2554 122 0.1400 0.1772 REMARK 3 5 3.0700 - 2.8500 1.00 2516 144 0.1514 0.1881 REMARK 3 6 2.8500 - 2.6800 0.99 2460 163 0.1896 0.1873 REMARK 3 7 2.6800 - 2.5500 0.99 2454 164 0.2027 0.2639 REMARK 3 8 2.5400 - 2.4300 1.00 2494 168 0.2015 0.2485 REMARK 3 9 2.4300 - 2.3400 0.99 2477 137 0.2051 0.2434 REMARK 3 10 2.3400 - 2.2600 0.99 2459 138 0.2323 0.2534 REMARK 3 11 2.2600 - 2.1900 0.99 2483 143 0.2436 0.2888 REMARK 3 12 2.1900 - 2.1300 0.99 2474 128 0.2603 0.3011 REMARK 3 13 2.1300 - 2.0700 1.00 2490 136 0.3122 0.3071 REMARK 3 14 2.0700 - 2.0200 0.99 2469 105 0.3259 0.4014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.085 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2731 REMARK 3 ANGLE : 0.567 3707 REMARK 3 CHIRALITY : 0.047 423 REMARK 3 PLANARITY : 0.005 468 REMARK 3 DIHEDRAL : 11.240 997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 0.6771 -39.9064 -24.9261 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.3148 REMARK 3 T33: 0.2896 T12: 0.0700 REMARK 3 T13: 0.0097 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 1.4333 L22: 1.7764 REMARK 3 L33: 1.1577 L12: 0.9119 REMARK 3 L13: 0.1903 L23: 0.0982 REMARK 3 S TENSOR REMARK 3 S11: 0.0623 S12: -0.3028 S13: 0.4262 REMARK 3 S21: 0.2453 S22: -0.1659 S23: 0.4161 REMARK 3 S31: -0.1702 S32: -0.1468 S33: 0.0299 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000264803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS SIRUS REMARK 200 BEAMLINE : MANACA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97718 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2.2.11-GAD03A188B-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 83.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 56.60 REMARK 200 R MERGE (I) : 0.60600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.60 REMARK 200 R MERGE FOR SHELL (I) : 3.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: PDB ENTRY 7U4S REMARK 200 REMARK 200 REMARK: TETRAGONAL TRAPEZOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 25.5% W/V REMARK 280 PEG4000, PH 9.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.35650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.14750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.57375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.35650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.72125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.72125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.35650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.57375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.35650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.14750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.35650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.14750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.35650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 118.72125 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.57375 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.35650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.57375 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 118.72125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.35650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.35650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 59.35650 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -59.35650 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -79.14750 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -118.71300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -59.35650 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -59.35650 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -79.14750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 898 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 911 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 2 CG1 CG2 REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 72 CD CE NZ REMARK 470 LYS A 89 CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 117 CD CE NZ REMARK 470 LYS A 215 CE NZ REMARK 470 LYS A 271 NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 713 O HOH A 718 2.14 REMARK 500 O HOH A 739 O HOH A 795 2.18 REMARK 500 O HOH A 835 O HOH A 879 2.18 REMARK 500 O HOH A 791 O HOH A 902 2.18 REMARK 500 O HOH A 817 O HOH A 862 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 818 O HOH A 818 7544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 111.00 -165.28 REMARK 500 SER A 63 -156.17 -139.82 REMARK 500 SER A 122 39.37 -79.70 REMARK 500 VAL A 135 -51.13 -122.36 REMARK 500 ASN A 136 23.03 -146.28 REMARK 500 ALA A 150 -160.09 57.47 REMARK 500 ASP A 189 108.12 -39.73 REMARK 500 SER A 192 65.66 -151.42 REMARK 500 ASP A 195 87.52 -163.74 REMARK 500 VAL A 240 132.55 84.81 REMARK 500 ALA A 336 -122.92 -104.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DE5 A 1 338 UNP Q8X1X3 G3P_PARBA 1 338 SEQRES 1 A 338 MET VAL VAL LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 338 GLY ARG ILE VAL PHE ARG ASN ALA VAL GLU HIS ASP ASP SEQRES 3 A 338 VAL GLU ILE VAL ALA VAL ASN ASP PRO PHE ILE GLU THR SEQRES 4 A 338 LYS TYR ALA ALA TYR MET LEU LYS TYR ASP SER THR HIS SEQRES 5 A 338 GLY GLN PHE LYS GLY ASP ILE GLN HIS SER SER SER ASN SEQRES 6 A 338 ASN LEU THR VAL ASN ASN LYS THR ILE HIS PHE TYR GLN SEQRES 7 A 338 GLU ARG ASP PRO ALA ASN ILE PRO TRP GLY LYS HIS GLY SEQRES 8 A 338 VAL ASP TYR VAL VAL GLU SER THR GLY VAL PHE THR THR SEQRES 9 A 338 THR GLU LYS ALA LYS ALA HIS LEU SER GLY GLY ALA LYS SEQRES 10 A 338 LYS VAL ILE ILE SER ALA PRO SER ALA ASP ALA PRO MET SEQRES 11 A 338 PHE VAL MET GLY VAL ASN GLU LYS SER TYR ARG PRO ASP SEQRES 12 A 338 ILE SER VAL LEU SER ASN ALA SER CSD THR THR ASN CYS SEQRES 13 A 338 LEU ALA PRO LEU ALA LYS VAL ILE HIS ASP ASN PHE GLY SEQRES 14 A 338 ILE ALA GLU GLY LEU MET THR THR ILE HIS SER TYR THR SEQRES 15 A 338 ALA THR GLN LYS THR VAL ASP GLY PRO SER HIS LYS ASP SEQRES 16 A 338 TRP ARG GLY GLY ARG THR ALA ALA GLN ASN ILE ILE PRO SEQRES 17 A 338 SER SER THR GLY ALA ALA LYS ALA VAL GLY LYS VAL ILE SEQRES 18 A 338 PRO ALA LEU ASN GLY LYS LEU THR GLY MET ALA MET ARG SEQRES 19 A 338 VAL PRO THR ALA ASN VAL SER VAL VAL ASP LEU THR CYS SEQRES 20 A 338 ARG THR GLU LYS PRO VAL THR TYR ASP GLN ILE LYS ALA SEQRES 21 A 338 ALA VAL LYS ALA ALA SER GLU GLY GLU LEU LYS GLY ILE SEQRES 22 A 338 LEU GLY TYR SER GLU ASP ALA LEU VAL SER THR ASP LEU SEQRES 23 A 338 ASN GLY ASP PRO ARG SER SER ILE PHE ASP ALA SER ALA SEQRES 24 A 338 GLY ILE ALA LEU ASN ASP ARG PHE VAL LYS LEU ILE SER SEQRES 25 A 338 TRP TYR ASP ASN GLU TRP GLY TYR SER ARG ARG VAL LEU SEQRES 26 A 338 ASP LEU ILE ALA TYR ILE ALA LYS VAL ASP ALA GLY LYS MODRES 8DE5 CSD A 152 CYS MODIFIED RESIDUE HET CSD A 152 8 HET NAD A 401 44 HET J0M A 402 13 HET SO4 A 403 5 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HETNAM CSD 3-SULFINOALANINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM J0M D-GALACTONIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN J0M D-GALACTONATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 J0M C6 H12 O7 FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 6(C3 H8 O3) FORMUL 11 HOH *414(H2 O) HELIX 1 AA1 GLY A 11 GLU A 23 1 13 HELIX 2 AA2 GLU A 38 TYR A 48 1 11 HELIX 3 AA3 ASP A 81 ILE A 85 5 5 HELIX 4 AA4 PRO A 86 GLY A 91 5 6 HELIX 5 AA5 THR A 104 LYS A 109 1 6 HELIX 6 AA6 LYS A 109 GLY A 114 1 6 HELIX 7 AA7 ASN A 136 TYR A 140 5 5 HELIX 8 AA8 SER A 151 GLY A 169 1 19 HELIX 9 AA9 TRP A 196 ARG A 200 5 5 HELIX 10 AB1 THR A 201 ASN A 205 5 5 HELIX 11 AB2 GLY A 212 ILE A 221 1 10 HELIX 12 AB3 PRO A 222 ASN A 225 5 4 HELIX 13 AB4 THR A 254 GLY A 268 1 15 HELIX 14 AB5 VAL A 282 ASN A 287 5 6 HELIX 15 AB6 GLU A 317 ALA A 336 1 20 SHEET 1 AA1 8 ILE A 59 HIS A 61 0 SHEET 2 AA1 8 ASN A 66 VAL A 69 -1 O THR A 68 N GLN A 60 SHEET 3 AA1 8 THR A 73 TYR A 77 -1 O ILE A 74 N LEU A 67 SHEET 4 AA1 8 GLU A 28 ASN A 33 1 N VAL A 30 O HIS A 75 SHEET 5 AA1 8 LYS A 4 ASN A 8 1 N VAL A 5 O GLU A 28 SHEET 6 AA1 8 TYR A 94 GLU A 97 1 O VAL A 96 N GLY A 6 SHEET 7 AA1 8 LYS A 118 ILE A 121 1 O ILE A 120 N VAL A 95 SHEET 8 AA1 8 VAL A 146 SER A 148 1 O LEU A 147 N ILE A 121 SHEET 1 AA2 7 ILE A 207 SER A 210 0 SHEET 2 AA2 7 LEU A 228 VAL A 235 -1 O ALA A 232 N SER A 209 SHEET 3 AA2 7 ILE A 170 SER A 180 1 N THR A 177 O MET A 233 SHEET 4 AA2 7 SER A 241 THR A 249 -1 O THR A 246 N LEU A 174 SHEET 5 AA2 7 PHE A 307 TYR A 314 -1 O SER A 312 N VAL A 243 SHEET 6 AA2 7 SER A 293 ASP A 296 -1 N ASP A 296 O ILE A 311 SHEET 7 AA2 7 LEU A 274 SER A 277 1 N GLY A 275 O SER A 293 SHEET 1 AA3 6 ILE A 207 SER A 210 0 SHEET 2 AA3 6 LEU A 228 VAL A 235 -1 O ALA A 232 N SER A 209 SHEET 3 AA3 6 ILE A 170 SER A 180 1 N THR A 177 O MET A 233 SHEET 4 AA3 6 SER A 241 THR A 249 -1 O THR A 246 N LEU A 174 SHEET 5 AA3 6 PHE A 307 TYR A 314 -1 O SER A 312 N VAL A 243 SHEET 6 AA3 6 ILE A 301 ASN A 304 -1 N ILE A 301 O LYS A 309 LINK C SER A 151 N CSD A 152 1555 1555 1.33 LINK C CSD A 152 N THR A 153 1555 1555 1.33 CRYST1 118.713 118.713 158.295 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006317 0.00000