HEADER VIRUS 21-JUN-22 8DES TITLE GOKUSHOVIRUS EC6098 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE DNA BINDING PROTEIN; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE EC6098; SOURCE 3 ORGANISM_TAXID: 2720215; SOURCE 4 GENE: VP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE EC6098; SOURCE 9 ORGANISM_TAXID: 2720215; SOURCE 10 GENE: VP8; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAPSID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR H.LEE,B.A.FANE,S.L.HAFENSTEIN REVDAT 3 23-NOV-22 8DES 1 JRNL REVDAT 2 02-NOV-22 8DES 1 JRNL REVDAT 1 12-OCT-22 8DES 0 JRNL AUTH H.LEE,A.J.BAXTER,C.M.BATOR,B.A.FANE,S.L.HAFENSTEIN JRNL TITL CRYO-EM STRUCTURE OF GOKUSHOVIRUS PHI EC6098 REVEALS A NOVEL JRNL TITL 2 CAPSID ARCHITECTURE FOR A SINGLE-SCAFFOLDING PROTEIN, JRNL TITL 3 MICROVIRUS ASSEMBLY SYSTEM. JRNL REF J.VIROL. V. 96 99022 2022 JRNL REFN ESSN 1098-5514 JRNL PMID 36255280 JRNL DOI 10.1128/JVI.00990-22 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 32308 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8DES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266516. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA PHAGE EC6098 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 120-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.16_B42360. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 222 REMARK 465 THR A 223 REMARK 465 LEU A 224 REMARK 465 GLU A 225 REMARK 465 TYR A 226 REMARK 465 PRO A 227 REMARK 465 TYR A 228 REMARK 465 TYR A 229 REMARK 465 LYS A 230 REMARK 465 GLU A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 GLY A 234 REMARK 465 PHE A 235 REMARK 465 ILE A 236 REMARK 465 SER A 237 REMARK 465 SER A 238 REMARK 465 ASN A 239 REMARK 465 TYR A 240 REMARK 465 GLY A 241 REMARK 465 ALA A 242 REMARK 465 SER A 243 REMARK 465 GLY A 244 REMARK 465 ASN A 245 REMARK 465 ILE A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 THR A 249 REMARK 465 PHE A 250 REMARK 465 PRO A 251 REMARK 465 THR A 252 REMARK 465 TYR A 253 REMARK 465 ILE A 254 REMARK 465 ALA A 255 REMARK 465 ARG A 256 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 VAL A 259 REMARK 465 GLY A 260 REMARK 465 ASP A 261 REMARK 465 ASP A 262 REMARK 465 SER A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 ASN A 266 REMARK 465 ILE A 267 REMARK 465 GLY A 268 REMARK 465 ASN A 269 REMARK 465 ALA A 270 REMARK 465 ALA A 271 REMARK 465 TYR A 272 REMARK 465 PHE A 273 REMARK 465 SER A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 276 REMARK 465 LEU A 277 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 GLY A 280 REMARK 465 ILE A 281 REMARK 465 ASN A 282 REMARK 465 PHE A 283 REMARK 465 PRO A 284 REMARK 465 ASN A 285 REMARK 465 ALA A 286 REMARK 465 PRO A 287 REMARK 465 ALA A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 ARG A 291 REMARK 465 TYR A 292 REMARK 465 ASP A 293 REMARK 465 VAL A 294 REMARK 465 LEU A 295 REMARK 465 GLY A 296 REMARK 465 GLY A 297 REMARK 465 PHE A 298 REMARK 465 ASP A 299 REMARK 465 PRO A 300 REMARK 465 ASN A 301 REMARK 465 THR A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 VAL A 305 REMARK 465 THR A 306 REMARK 465 LEU A 307 REMARK 465 LYS A 308 REMARK 465 LYS A 309 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ARG E 3 REMARK 465 SER E 4 REMARK 465 ARG E 5 REMARK 465 ARG E 6 REMARK 465 ARG E 7 REMARK 465 MET E 8 REMARK 465 SER E 9 REMARK 465 LYS E 10 REMARK 465 ARG E 11 REMARK 465 SER E 12 REMARK 465 SER E 13 REMARK 465 ARG E 14 REMARK 465 ARG E 15 REMARK 465 SER E 16 REMARK 465 PHE E 17 REMARK 465 ARG E 18 REMARK 465 LYS E 19 REMARK 465 TYR E 20 REMARK 465 ALA E 21 REMARK 465 LYS E 22 REMARK 465 THR E 23 REMARK 465 HIS E 24 REMARK 465 LYS E 25 REMARK 465 ARG E 26 REMARK 465 ASN E 27 REMARK 465 PHE E 28 REMARK 465 LYS E 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 434 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 438 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 530 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG E 34 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG E 38 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 113 -135.86 47.61 REMARK 500 LEU A 184 30.79 -97.25 REMARK 500 ALA A 394 -169.89 -79.05 REMARK 500 GLN A 439 -19.86 -145.10 REMARK 500 TYR A 463 84.01 -158.31 REMARK 500 GLN A 465 -21.39 -142.11 REMARK 500 ASN A 525 63.53 -154.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27397 RELATED DB: EMDB REMARK 900 GOKUSHOVIRUS EC6098 DBREF1 8DES A 1 566 UNP A0A6G9L6B3_9VIRU DBREF2 8DES A A0A6G9L6B3 1 566 DBREF1 8DES E 1 39 UNP A0A6G9L8Z7_9VIRU DBREF2 8DES E A0A6G9L8Z7 1 39 SEQRES 1 A 566 MET SER LYS PHE GLY ARG LYS VAL PRO SER ASN ALA LYS SEQRES 2 A 566 SER GLN HIS ASN PHE SER VAL ILE PRO SER ALA ASN ILE SEQRES 3 A 566 GLN ARG SER VAL PHE ASN ARG SER SER GLY TYR LYS THR SEQRES 4 A 566 THR PHE ASP ALA GLY TYR LEU ILE PRO VAL PHE LEU ASP SEQRES 5 A 566 GLU ALA LEU PRO GLY ASP THR PHE HIS LEU LYS THR SER SEQRES 6 A 566 VAL LEU ALA ARG LEU SER THR PRO VAL VAL PRO PHE MET SEQRES 7 A 566 ASP ASN LEU ARG LEU ASP ILE GLN TYR PHE SER VAL PRO SEQRES 8 A 566 TYR ARG LEU VAL TRP ASP ASN TRP GLN LYS PHE ASN GLY SEQRES 9 A 566 GLU GLN LYS ASN PRO GLY ASP SER THR ASP TYR LEU ILE SEQRES 10 A 566 PRO GLN ILE LYS ALA PRO ALA GLY GLY PHE PRO VAL GLY SEQRES 11 A 566 SER LEU ALA ASP TYR PHE GLY VAL PRO THR GLY VAL GLU SEQRES 12 A 566 ASN ILE SER VAL SER ALA LEU PRO PHE ARG ALA TYR ASN SEQRES 13 A 566 LEU ILE TYR ASN GLU TRP TYR ARG ASP GLU ASN LEU ILE SEQRES 14 A 566 ASN SER ALA PRO LEU PRO LEU GLY ASP GLU GLU GLU THR SEQRES 15 A 566 GLY LEU ALA ASN PHE PRO LEU ARG LYS ARG ALA LYS ARG SEQRES 16 A 566 HIS ASP TYR PHE THR SER ALA LEU PRO TRP PRO GLN LYS SEQRES 17 A 566 GLY GLU GLY VAL GLU ILE GLY LEU GLY VAL PRO PRO SER SEQRES 18 A 566 TYR THR LEU GLU TYR PRO TYR TYR LYS GLU GLY MET GLY SEQRES 19 A 566 PHE ILE SER SER ASN TYR GLY ALA SER GLY ASN ILE GLY SEQRES 20 A 566 ARG THR PHE PRO THR TYR ILE ALA ARG SER SER VAL GLY SEQRES 21 A 566 ASP ASP SER SER SER ASN ILE GLY ASN ALA ALA TYR PHE SEQRES 22 A 566 SER GLU GLY LEU GLU ASN GLY ILE ASN PHE PRO ASN ALA SEQRES 23 A 566 PRO ALA ARG GLY ARG TYR ASP VAL LEU GLY GLY PHE ASP SEQRES 24 A 566 PRO ASN THR PRO PRO VAL THR LEU LYS LYS GLU GLY GLY SEQRES 25 A 566 GLU VAL VAL ASP ASN LEU THR ILE ASN SER LEU ARG GLN SEQRES 26 A 566 ALA PHE GLN LEU GLN ARG LEU LEU GLU ARG ASP ALA ARG SEQRES 27 A 566 GLY GLY THR ARG TYR ILE GLU ILE ILE ARG SER HIS PHE SEQRES 28 A 566 GLY VAL ILE SER PRO ASP ALA ARG VAL GLN ARG PRO GLU SEQRES 29 A 566 TYR LEU GLY SER GLY SER PHE ASP ILE ASN ILE ASN PRO SEQRES 30 A 566 VAL LEU GLN ASN SER ALA THR THR ASP ALA SER PRO GLN SEQRES 31 A 566 GLY ASN LEU ALA ALA TYR GLY VAL SER GLY GLY VAL ASN SEQRES 32 A 566 ARG GLY PHE SER HIS SER PHE VAL GLU HIS CYS PHE VAL SEQRES 33 A 566 ILE GLY LEU VAL SER VAL ARG ALA ASP LEU THR TYR GLN SEQRES 34 A 566 GLN GLY ILE PRO ARG MET PHE SER ARG GLN THR ARG PHE SEQRES 35 A 566 ASP PHE TYR TRP PRO ALA LEU ALA HIS LEU GLY GLU GLN SEQRES 36 A 566 ALA ILE LEU ASN LYS GLU ILE TYR ALA GLN GLY ASN ALA SEQRES 37 A 566 LYS ASP ASP GLU VAL PHE GLY TYR GLN GLU ARG TYR ALA SEQRES 38 A 566 GLU TYR ARG TYR ARG PRO SER GLN ILE THR GLY LYS LEU SEQRES 39 A 566 ARG SER THR ASP PRO GLN SER LEU ASP VAL TRP HIS LEU SEQRES 40 A 566 ALA GLN ARG PHE ASP SER LEU PRO ALA LEU ASN GLN GLU SEQRES 41 A 566 PHE ILE GLU GLU ASN PRO PRO MET LYS ARG VAL LEU ALA SEQRES 42 A 566 VAL GLN ASP GLU PRO GLN PHE ILE MET ASP ALA PHE PHE SEQRES 43 A 566 ASP LEU LYS CYS VAL ARG PRO MET PRO VAL TYR SER VAL SEQRES 44 A 566 PRO GLY LEU ILE ASP HIS PHE SEQRES 1 E 39 MET ALA ARG SER ARG ARG ARG MET SER LYS ARG SER SER SEQRES 2 E 39 ARG ARG SER PHE ARG LYS TYR ALA LYS THR HIS LYS ARG SEQRES 3 E 39 ASN PHE LYS ALA ARG SER MET ARG GLY GLY ILE ARG LEU HELIX 1 AA1 ASN A 11 SER A 19 1 9 HELIX 2 AA2 ARG A 93 VAL A 95 5 3 HELIX 3 AA3 ASN A 98 ASN A 103 1 6 HELIX 4 AA4 SER A 131 GLY A 137 1 7 HELIX 5 AA5 ALA A 149 TYR A 163 1 15 HELIX 6 AA6 THR A 319 GLY A 340 1 22 HELIX 7 AA7 ARG A 342 PHE A 351 1 10 HELIX 8 AA8 ASP A 357 GLN A 361 5 5 HELIX 9 AA9 PRO A 433 ARG A 438 1 6 HELIX 10 AB1 THR A 440 PHE A 444 5 5 HELIX 11 AB2 TRP A 446 ALA A 450 5 5 HELIX 12 AB3 LYS A 460 ILE A 462 5 3 HELIX 13 AB4 ASN A 467 ASP A 471 5 5 HELIX 14 AB5 TYR A 480 TYR A 485 1 6 HELIX 15 AB6 LEU A 502 HIS A 506 5 5 HELIX 16 AB7 ASN A 518 GLU A 523 1 6 HELIX 17 AB8 PRO A 527 LEU A 532 1 6 SHEET 1 AA1 5 SER A 29 ASN A 32 0 SHEET 2 AA1 5 PHE A 540 ARG A 552 -1 O CYS A 550 N PHE A 31 SHEET 3 AA1 5 THR A 59 LEU A 70 -1 N ARG A 69 O ILE A 541 SHEET 4 AA1 5 LEU A 393 VAL A 402 -1 O SER A 399 N ALA A 68 SHEET 5 AA1 5 ASN A 374 LEU A 379 -1 N ASN A 376 O TYR A 396 SHEET 1 AA2 4 SER A 35 PHE A 41 0 SHEET 2 AA2 4 PHE A 540 ARG A 552 -1 O MET A 542 N THR A 39 SHEET 3 AA2 4 THR A 59 LEU A 70 -1 N ARG A 69 O ILE A 541 SHEET 4 AA2 4 PHE A 406 SER A 409 -1 O PHE A 406 N LEU A 62 SHEET 1 AA3 4 ILE A 47 ALA A 54 0 SHEET 2 AA3 4 CYS A 414 ALA A 424 -1 O CYS A 414 N ALA A 54 SHEET 3 AA3 4 LEU A 81 PRO A 91 -1 N GLN A 86 O LEU A 419 SHEET 4 AA3 4 GLU A 364 ASP A 372 -1 O PHE A 371 N LEU A 83 SHEET 1 AA4 3 SER A 146 SER A 148 0 SHEET 2 AA4 3 GLN A 119 LYS A 121 -1 N ILE A 120 O VAL A 147 SHEET 3 AA4 3 GLU A 181 THR A 182 1 O GLU A 181 N LYS A 121 SHEET 1 AA5 2 GLN A 455 LEU A 458 0 SHEET 2 AA5 2 VAL A 473 GLN A 477 -1 O GLY A 475 N ILE A 457 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000