HEADER APOPTOSIS/APOPTOSIS INHIBITOR 24-JUN-22 8DGZ TITLE CASPASE-7 BOUND TO SUBSTRATE MIMIC AND ALLOSTERIC INHIBITOR CAVEAT 8DGZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC COMPND 5 PROTEASE 3,ICE-LAP3; COMPND 6 EC: 3.4.22.60; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AC-ASP-GLU-VAL-ASP-ALDEHYDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS ALLOSTERY, INHIBITOR, TERNARY, APOPTOSIS-APOPTOSIS INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PROPP,A.KALENKIEWICZ,F.H.KATHRYN,M.A.SPIES REVDAT 5 22-NOV-23 8DGZ 1 SOURCE REVDAT 4 15-NOV-23 8DGZ 1 REMARK REVDAT 3 25-OCT-23 8DGZ 1 REMARK REVDAT 2 26-JUL-23 8DGZ 1 JRNL REVDAT 1 05-JUL-23 8DGZ 0 JRNL AUTH K.F.HOBBS,J.PROPP,N.R.VANCE,A.KALENKIEWICZ,K.R.WITKIN, JRNL AUTH 2 M.ASHLEY SPIES JRNL TITL ALLOSTERIC TUNING OF CASPASE-7: ESTABLISHING THE NEXUS OF JRNL TITL 2 STRUCTURE AND CATALYTIC POWER. JRNL REF CHEMISTRY V. 29 00872 2023 JRNL REFN ISSN 0947-6539 JRNL PMID 37005499 JRNL DOI 10.1002/CHEM.202300872 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9400 - 5.6000 1.00 2663 184 0.2188 0.2433 REMARK 3 2 5.5900 - 4.4400 1.00 2561 130 0.2176 0.2160 REMARK 3 3 4.4400 - 3.8800 1.00 2577 119 0.2142 0.2300 REMARK 3 4 3.8800 - 3.5300 1.00 2500 140 0.2237 0.2315 REMARK 3 5 3.5300 - 3.2700 1.00 2498 137 0.2477 0.3383 REMARK 3 6 3.2700 - 3.0800 1.00 2497 116 0.3121 0.3273 REMARK 3 7 3.0800 - 2.9300 1.00 2517 128 0.3270 0.3787 REMARK 3 8 2.9300 - 2.8000 0.99 2448 149 0.4289 0.4903 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 57 THROUGH 94 OR REMARK 3 (RESID 95 THROUGH 96 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 97 THROUGH 186 OR (RESID 213 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 214 THROUGH 215 OR REMARK 3 (RESID 216 THROUGH 217 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 218 THROUGH 238 OR (RESID 239 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 240 THROUGH 302)) REMARK 3 SELECTION : (CHAIN B AND (RESID 57 THROUGH 58 OR REMARK 3 (RESID 59 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 60 REMARK 3 THROUGH 65 OR (RESID 66 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 67 THROUGH 68 OR (RESID 69 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 70 THROUGH 77 OR REMARK 3 (RESID 78 THROUGH 82 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 83 OR (RESID 84 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 85 OR (RESID 86 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 87 OR (RESID 88 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 89 THROUGH 91 OR (RESID 92 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 98 OR REMARK 3 (RESID 99 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 100 REMARK 3 THROUGH 117 OR (RESID 118 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 119 OR (RESID 120 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 121 THROUGH 122 OR (RESID 123 REMARK 3 THROUGH 126 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 127 THROUGH 145 OR (RESID 146 THROUGH 151 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 152 OR (RESID REMARK 3 153 THROUGH 154 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 155 OR (RESID 156 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 157 THROUGH 160 OR (RESID 161 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 162 THROUGH 166 OR REMARK 3 (RESID 167 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 168 OR REMARK 3 (RESID 169 THROUGH 170 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 171 OR (RESID 172 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 173 THROUGH 175 OR (RESID 176 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 177 THROUGH 186 REMARK 3 OR RESID 213 THROUGH 214 OR (RESID 215 REMARK 3 THROUGH 217 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 218 THROUGH 224 OR (RESID 225 THROUGH 226 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 227 OR RESID 231 REMARK 3 OR (RESID 232 THROUGH 235 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 236 THROUGH 242 OR (RESID 243 REMARK 3 THROUGH 244 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 245 THROUGH 254 OR (RESID 255 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 256 THROUGH 273 OR RESID 284 REMARK 3 THROUGH 285 OR (RESID 287 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 288 THROUGH 302)) REMARK 3 ATOM PAIRS NUMBER : 1647 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 2.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1F1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE AND 2.1 M SODIUM REMARK 280 FORMATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.41533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.20767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.20767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.41533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE AC-ASP-GLU-VAL-ASP-ALDEHYDE IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: AC-ASP-GLU-VAL-ASP-ALDEHYDE REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 LEU A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 PHE A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 LEU A 35 REMARK 465 PHE A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 MET A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 ILE A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 VAL A 55 REMARK 465 PRO A 56 REMARK 465 GLY A 152 REMARK 465 ARG A 187 REMARK 465 GLY A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 LEU A 191 REMARK 465 ASP A 192 REMARK 465 ASP A 193 REMARK 465 GLY A 194 REMARK 465 ILE A 195 REMARK 465 GLN A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 ILE A 202 REMARK 465 ASN A 203 REMARK 465 ASP A 204 REMARK 465 THR A 205 REMARK 465 ASP A 206 REMARK 465 ALA A 207 REMARK 465 ASN A 208 REMARK 465 PRO A 209 REMARK 465 ARG A 210 REMARK 465 TYR A 211 REMARK 465 GLY A 228 REMARK 465 TYR A 229 REMARK 465 TYR A 230 REMARK 465 GLY A 236 REMARK 465 SER A 275 REMARK 465 GLN A 276 REMARK 465 SER A 277 REMARK 465 ASP A 278 REMARK 465 ASP A 279 REMARK 465 PRO A 280 REMARK 465 HIS A 281 REMARK 465 PHE A 282 REMARK 465 HIS A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 303 REMARK 465 MET B -1 REMARK 465 LEU B 0 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 CYS B 7 REMARK 465 ILE B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 ASN B 18 REMARK 465 GLU B 19 REMARK 465 ASP B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 ASP B 23 REMARK 465 ALA B 24 REMARK 465 LYS B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ARG B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 PHE B 31 REMARK 465 VAL B 32 REMARK 465 PRO B 33 REMARK 465 SER B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 36 REMARK 465 SER B 37 REMARK 465 LYS B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 LYS B 41 REMARK 465 ASN B 42 REMARK 465 VAL B 43 REMARK 465 THR B 44 REMARK 465 MET B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 ILE B 48 REMARK 465 LYS B 49 REMARK 465 THR B 50 REMARK 465 THR B 51 REMARK 465 ARG B 187 REMARK 465 GLY B 188 REMARK 465 THR B 189 REMARK 465 GLU B 190 REMARK 465 LEU B 191 REMARK 465 ASP B 192 REMARK 465 GLN B 196 REMARK 465 ALA B 197 REMARK 465 ASP B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 PRO B 201 REMARK 465 ILE B 202 REMARK 465 ASN B 203 REMARK 465 ASP B 204 REMARK 465 THR B 205 REMARK 465 ASP B 206 REMARK 465 ALA B 207 REMARK 465 ASN B 208 REMARK 465 PRO B 209 REMARK 465 ARG B 210 REMARK 465 TYR B 211 REMARK 465 LYS B 212 REMARK 465 GLU B 274 REMARK 465 SER B 275 REMARK 465 GLN B 276 REMARK 465 SER B 277 REMARK 465 ASP B 278 REMARK 465 ASP B 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 PHE A 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 VAL A 81 CG1 CG2 REMARK 470 THR A 82 OG1 CG2 REMARK 470 MET A 84 CG SD CE REMARK 470 VAL A 86 CG1 CG2 REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 VAL A 149 CG1 CG2 REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 TYR A 151 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 VAL A 156 CG1 CG2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 VAL A 215 CG1 CG2 REMARK 470 THR A 225 OG1 CG2 REMARK 470 VAL A 226 CG1 CG2 REMARK 470 TRP A 232 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 232 CZ3 CH2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 SER A 234 OG REMARK 470 PRO A 235 CG CD REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 243 CG CD OE1 NE2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ASP A 255 CG OD1 OD2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 272 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 273 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 VAL B 55 CG1 CG2 REMARK 470 PRO B 56 CG CD REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 ASP B 193 CG OD1 OD2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 VAL B 226 CG1 CG2 REMARK 470 TYR B 230 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 233 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 235 CG CD REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 SER B 239 OG REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 271 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 272 CG ND1 CD2 CE1 NE2 REMARK 470 PRO B 280 CG CD REMARK 470 HIS B 281 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 171 63.74 -151.14 REMARK 500 PHE A 273 106.64 -33.46 REMARK 500 THR B 57 -32.18 62.05 REMARK 500 SER B 143 -174.83 -170.01 REMARK 500 CYS B 171 75.43 -152.84 REMARK 500 ARG B 233 119.94 -163.71 REMARK 500 GLU B 284 31.25 74.84 REMARK 500 GLU C 3 -121.92 -125.46 REMARK 500 VAL C 4 -174.50 -178.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 3 VAL C 4 144.58 REMARK 500 VAL C 4 ASJ C 5 -140.65 REMARK 500 VAL D 4 ASJ D 5 148.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DGZ A 2 303 UNP P55210 CASP7_HUMAN 2 303 DBREF 8DGZ B 2 303 UNP P55210 CASP7_HUMAN 2 303 DBREF 8DGZ C 1 5 PDB 8DGZ 8DGZ 1 5 DBREF 8DGZ D 1 5 PDB 8DGZ 8DGZ 1 5 SEQADV 8DGZ MET A -1 UNP P55210 INITIATING METHIONINE SEQADV 8DGZ LEU A 0 UNP P55210 EXPRESSION TAG SEQADV 8DGZ GLU A 1 UNP P55210 EXPRESSION TAG SEQADV 8DGZ MET B -1 UNP P55210 INITIATING METHIONINE SEQADV 8DGZ LEU B 0 UNP P55210 EXPRESSION TAG SEQADV 8DGZ GLU B 1 UNP P55210 EXPRESSION TAG SEQRES 1 A 305 MET LEU GLU ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN SEQRES 2 A 305 GLY VAL GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA SEQRES 3 A 305 LYS PRO ASP ARG SER SER PHE VAL PRO SER LEU PHE SER SEQRES 4 A 305 LYS LYS LYS LYS ASN VAL THR MET ARG SER ILE LYS THR SEQRES 5 A 305 THR ARG ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN SEQRES 6 A 305 PHE GLU LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS SEQRES 7 A 305 ASN PHE ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY SEQRES 8 A 305 THR ASP LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SEQRES 9 A 305 SER LEU GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER SEQRES 10 A 305 CYS ALA LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU SEQRES 11 A 305 GLU ASP HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU SEQRES 12 A 305 LEU SER HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP SEQRES 13 A 305 GLY VAL THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG SEQRES 14 A 305 GLY ASP ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU SEQRES 15 A 305 PHE PHE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP SEQRES 16 A 305 GLY ILE GLN ALA ASP SER GLY PRO ILE ASN ASP THR ASP SEQRES 17 A 305 ALA ASN PRO ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE SEQRES 18 A 305 LEU PHE ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP SEQRES 19 A 305 ARG SER PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU SEQRES 20 A 305 CYS SER ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE SEQRES 21 A 305 MET GLN ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG SEQRES 22 A 305 HIS PHE GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU SEQRES 23 A 305 LYS LYS GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS SEQRES 24 A 305 GLU LEU TYR PHE SER GLN SEQRES 1 B 305 MET LEU GLU ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN SEQRES 2 B 305 GLY VAL GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA SEQRES 3 B 305 LYS PRO ASP ARG SER SER PHE VAL PRO SER LEU PHE SER SEQRES 4 B 305 LYS LYS LYS LYS ASN VAL THR MET ARG SER ILE LYS THR SEQRES 5 B 305 THR ARG ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN SEQRES 6 B 305 PHE GLU LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS SEQRES 7 B 305 ASN PHE ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY SEQRES 8 B 305 THR ASP LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SEQRES 9 B 305 SER LEU GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER SEQRES 10 B 305 CYS ALA LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU SEQRES 11 B 305 GLU ASP HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU SEQRES 12 B 305 LEU SER HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP SEQRES 13 B 305 GLY VAL THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG SEQRES 14 B 305 GLY ASP ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU SEQRES 15 B 305 PHE PHE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP SEQRES 16 B 305 GLY ILE GLN ALA ASP SER GLY PRO ILE ASN ASP THR ASP SEQRES 17 B 305 ALA ASN PRO ARG TYR LYS ILE PRO VAL GLU ALA ASP PHE SEQRES 18 B 305 LEU PHE ALA TYR SER THR VAL PRO GLY TYR TYR SER TRP SEQRES 19 B 305 ARG SER PRO GLY ARG GLY SER TRP PHE VAL GLN ALA LEU SEQRES 20 B 305 CYS SER ILE LEU GLU GLU HIS GLY LYS ASP LEU GLU ILE SEQRES 21 B 305 MET GLN ILE LEU THR ARG VAL ASN ASP ARG VAL ALA ARG SEQRES 22 B 305 HIS PHE GLU SER GLN SER ASP ASP PRO HIS PHE HIS GLU SEQRES 23 B 305 LYS LYS GLN ILE PRO CYS VAL VAL SER MET LEU THR LYS SEQRES 24 B 305 GLU LEU TYR PHE SER GLN SEQRES 1 C 5 ACE ASP GLU VAL ASJ SEQRES 1 D 5 ACE ASP GLU VAL ASJ HET ACE C 1 3 HET ASJ C 5 8 HET ACE D 1 3 HET ASJ D 5 8 HET 8YJ B 401 20 HETNAM ACE ACETYL GROUP HETNAM ASJ (3S)-3-AMINO-4-HYDROXYBUTANOIC ACID HETNAM 8YJ 2-{[2-(4-CHLOROPHENYL)-2-OXOETHYL]SULFANYL}BENZOIC ACID FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ASJ 2(C4 H9 N O3) FORMUL 5 8YJ C15 H11 CL O3 S HELIX 1 AA1 GLY A 89 GLY A 105 1 17 HELIX 2 AA2 SER A 115 GLU A 129 1 15 HELIX 3 AA3 ILE A 159 HIS A 165 1 7 HELIX 4 AA4 PHE A 166 ARG A 167 5 2 HELIX 5 AA5 GLY A 168 LEU A 175 5 8 HELIX 6 AA6 TRP A 240 GLY A 253 1 14 HELIX 7 AA7 GLU A 257 PHE A 273 1 17 HELIX 8 AA8 ASP B 79 GLY B 83 5 5 HELIX 9 AA9 GLY B 89 GLY B 105 1 17 HELIX 10 AB1 SER B 115 GLU B 129 1 15 HELIX 11 AB2 ILE B 159 HIS B 165 1 7 HELIX 12 AB3 PHE B 166 LEU B 175 5 10 HELIX 13 AB4 TRP B 240 GLY B 253 1 14 HELIX 14 AB5 GLU B 257 PHE B 273 1 17 SHEET 1 AA112 PHE A 106 ASN A 112 0 SHEET 2 AA112 LYS A 66 ASN A 74 1 N ILE A 72 O TYR A 111 SHEET 3 AA112 ALA A 134 LEU A 142 1 O ILE A 140 N ILE A 73 SHEET 4 AA112 LYS A 179 GLN A 184 1 O PHE A 182 N LEU A 141 SHEET 5 AA112 PHE A 219 TYR A 223 1 O LEU A 220 N PHE A 181 SHEET 6 AA112 CYS A 290 SER A 293 -1 O VAL A 292 N PHE A 221 SHEET 7 AA112 CYS B 290 SER B 293 -1 O VAL B 291 N SER A 293 SHEET 8 AA112 PHE B 219 TYR B 223 -1 N TYR B 223 O CYS B 290 SHEET 9 AA112 LYS B 179 GLN B 184 1 N PHE B 181 O ALA B 222 SHEET 10 AA112 ALA B 134 LEU B 142 1 N LEU B 141 O GLN B 184 SHEET 11 AA112 LYS B 66 ASN B 74 1 N ILE B 73 O ILE B 140 SHEET 12 AA112 PHE B 106 ASN B 112 1 O TYR B 111 N ILE B 72 SHEET 1 AA2 3 GLY A 145 GLU A 146 0 SHEET 2 AA2 3 VAL A 149 ILE A 150 -1 O VAL A 149 N GLU A 146 SHEET 3 AA2 3 THR A 157 PRO A 158 -1 O THR A 157 N ILE A 150 SHEET 1 AA3 2 ARG A 233 SER A 234 0 SHEET 2 AA3 2 GLY A 238 SER A 239 -1 O GLY A 238 N SER A 234 SHEET 1 AA4 3 GLY B 145 GLU B 146 0 SHEET 2 AA4 3 VAL B 149 TYR B 151 -1 O VAL B 149 N GLU B 146 SHEET 3 AA4 3 VAL B 156 PRO B 158 -1 O THR B 157 N ILE B 150 SHEET 1 AA5 2 ARG B 233 SER B 234 0 SHEET 2 AA5 2 GLY B 238 SER B 239 -1 O GLY B 238 N SER B 234 LINK SG CYS A 186 C ASJ C 5 1555 1555 1.82 LINK SG CYS B 186 C ASJ D 5 1555 1555 1.82 LINK C ACE C 1 N ASP C 2 1555 1555 1.34 LINK C VAL C 4 N ASJ C 5 1555 1555 1.34 LINK C ACE D 1 N ASP D 2 1555 1555 1.33 LINK C VAL D 4 N ASJ D 5 1555 1555 1.34 CRYST1 89.045 89.045 183.623 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011230 0.006484 0.000000 0.00000 SCALE2 0.000000 0.012968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005446 0.00000