data_8DI2 # _entry.id 8DI2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DI2 pdb_00008di2 10.2210/pdb8di2/pdb WWPDB D_1000264324 ? ? BMRB 31030 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Site 2 insulin receptor binding peptide IM459N21' _pdbx_database_related.db_id 31030 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8DI2 _pdbx_database_status.recvd_initial_deposition_date 2022-06-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lawrence, M.C.' 1 0000-0003-1999-0801 'Hu, H.' 2 0000-0002-0312-1954 'Martinez, F.J.' 3 ? 'Espinosa, J.F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 5695 _citation.page_last 5695 _citation.title 'Activation of the human insulin receptor by non-insulin-related peptides.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-022-33315-8 _citation.pdbx_database_id_PubMed 36171189 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kirk, N.S.' 1 0000-0001-5028-6308 primary 'Chen, Q.' 2 0000-0003-1256-0366 primary 'Wu, Y.G.' 3 ? primary 'Asante, A.L.' 4 ? primary 'Hu, H.' 5 0000-0002-0312-1954 primary 'Espinosa, J.F.' 6 ? primary 'Martinez-Olid, F.' 7 0000-0003-0781-2784 primary 'Margetts, M.B.' 8 0000-0003-0615-1515 primary 'Mohammed, F.A.' 9 ? primary 'Kiselyov, V.V.' 10 0000-0002-4215-4804 primary 'Barrett, D.G.' 11 0000-0002-6128-5447 primary 'Lawrence, M.C.' 12 0000-0003-1999-0801 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Site 2 binding peptide IM459N21' _entity.formula_weight 2630.088 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(BVK)SLEQEW(AIB)KIECEVYGKCPPK(LYN)' _entity_poly.pdbx_seq_one_letter_code_can XSLEQEWAKIECEVYGKCPPKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 BVK n 1 2 SER n 1 3 LEU n 1 4 GLU n 1 5 GLN n 1 6 GLU n 1 7 TRP n 1 8 AIB n 1 9 LYS n 1 10 ILE n 1 11 GLU n 1 12 CYS n 1 13 GLU n 1 14 VAL n 1 15 TYR n 1 16 GLY n 1 17 LYS n 1 18 CYS n 1 19 PRO n 1 20 PRO n 1 21 LYS n 1 22 LYN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8DI2 _struct_ref.pdbx_db_accession 8DI2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8DI2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8DI2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 BVK non-polymer . '2-[4-(aminomethyl)phenyl]ethanoic acid' ? 'C9 H11 N O2' 165.189 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYN 'L-peptide linking' n '2,6-DIAMINO-HEXANOIC ACID AMIDE' ? 'C6 H16 N3 O 1' 146.211 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H COSY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 4 1 1 '2D 1H-1H NOESY' 1 isotropic 5 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details '20 mM Tris-d11, 100 mM NaCl, 5% D2O' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'Standard buffer' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20 mM [U-2H] Tris, 100 mM sodium chloride, 0.75 mM peptide, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label IM459N21 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'The peptide concentration was 0.75 mM' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8DI2 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 8DI2 _pdbx_nmr_ensemble.conformers_calculated_total_number 16 _pdbx_nmr_ensemble.conformers_submitted_total_number 16 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8DI2 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement GROMACS 5.0.7 'Mark Abraham, Berk Hess, David van der Spoel, and Erik Lindahl' 2 'structure calculation' GROMACS 5.0.7 'Mark Abraham, Berk Hess, David van der Spoel, and Erik Lindahl' 3 'chemical shift assignment' 'CcpNmr Analysis' 2 CCPN 4 'peak picking' 'CcpNmr Analysis' 2 CCPN # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DI2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8DI2 _struct.title 'Site 2 insulin receptor binding peptide IM459N21' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DI2 _struct_keywords.text 'Insulin receptor, Receptor, tyrosine kinase, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 12 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 12 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 12 A CYS 18 1_555 ? ? ? ? ? ? ? 2.035 ? ? covale1 covale both ? A BVK 1 C ? ? ? 1_555 A SER 2 N ? ? A BVK 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A TRP 7 C ? ? ? 1_555 A AIB 8 N ? ? A TRP 7 A AIB 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A AIB 8 C ? ? ? 1_555 A LYS 9 N ? ? A AIB 8 A LYS 9 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? A LYS 21 C ? ? ? 1_555 A LYN 22 N ? ? A LYS 21 A LYN 23 1_555 ? ? ? ? ? ? ? 1.335 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 1 5.19 2 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 2 10.40 3 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 3 11.41 4 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 4 -19.29 5 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 5 10.10 6 PRO 19 A . ? PRO 19 A PRO 20 A ? PRO 20 A 5 -0.21 7 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 6 16.00 8 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 7 7.77 9 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 8 5.60 10 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 9 -28.94 11 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 10 7.25 12 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 11 7.10 13 PRO 19 A . ? PRO 19 A PRO 20 A ? PRO 20 A 11 2.15 14 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 12 8.71 15 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 13 5.66 16 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 14 -3.88 17 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 15 3.35 18 BVK 1 A . ? BVK 1 A SER 2 A ? SER 2 A 16 -8.77 # _atom_sites.entry_id 8DI2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 BVK 1 1 1 BVK BVK A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 AIB 8 8 8 AIB AIB A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 LYN 22 23 23 LYN LYN A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 lawrence@wehi.edu.au Michael Lawrence ? 'principal investigator/group leader' 0000-0003-1999-0801 3 hu_haitao@lilly.com Haitao Hu ? 'principal investigator/group leader' 0000-0002-0312-1954 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 180 ? 1 MORE -1 ? 1 'SSA (A^2)' 2300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-11-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 8DI2 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Tris 20 ? mM '[U-2H]' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 peptide 0.75 ? mM 'natural abundance' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 8 _pdbx_validate_close_contact.auth_atom_id_1 HG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 6 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.51 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE1 A TRP 7 ? ? CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? 100.78 107.30 -6.52 1.00 N 2 1 CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? CG A TRP 7 ? ? 112.35 107.30 5.05 0.80 N 3 1 CG A TRP 7 ? ? CD2 A TRP 7 ? ? CE3 A TRP 7 ? ? 127.40 133.90 -6.50 0.90 N 4 2 O A BVK 1 ? ? C A BVK 1 ? ? N A SER 2 ? ? 113.08 122.70 -9.62 1.60 Y 5 2 CB A LEU 3 ? ? CG A LEU 3 ? ? CD2 A LEU 3 ? ? 124.14 111.00 13.14 1.70 N 6 3 CA A VAL 14 ? ? CB A VAL 14 ? ? CG2 A VAL 14 ? ? 120.96 110.90 10.06 1.50 N 7 3 CB A TYR 15 ? ? CG A TYR 15 ? ? CD2 A TYR 15 ? ? 116.53 121.00 -4.47 0.60 N 8 4 O A GLU 4 ? ? C A GLU 4 ? ? N A GLN 5 ? ? 112.19 122.70 -10.51 1.60 Y 9 5 CA A TRP 7 ? ? CB A TRP 7 ? ? CG A TRP 7 ? ? 125.49 113.70 11.79 1.90 N 10 5 OE1 A GLU 11 ? ? CD A GLU 11 ? ? OE2 A GLU 11 ? ? 113.57 123.30 -9.73 1.20 N 11 5 N A PRO 19 ? ? CA A PRO 19 ? ? CB A PRO 19 ? ? 110.80 103.30 7.50 1.20 N 12 7 O A BVK 1 ? ? C A BVK 1 ? ? N A SER 2 ? ? 110.35 122.70 -12.35 1.60 Y 13 7 CB A TRP 7 ? ? CA A TRP 7 ? ? C A TRP 7 ? ? 124.68 110.40 14.28 2.00 N 14 8 CB A TRP 7 ? ? CA A TRP 7 ? ? C A TRP 7 ? ? 126.37 110.40 15.97 2.00 N 15 8 CA A TRP 7 ? ? CB A TRP 7 ? ? CG A TRP 7 ? ? 125.53 113.70 11.83 1.90 N 16 8 CA A CYS 12 ? ? CB A CYS 12 ? ? SG A CYS 12 ? ? 126.45 114.20 12.25 1.10 N 17 9 CA A TRP 7 ? ? CB A TRP 7 ? ? CG A TRP 7 ? ? 125.75 113.70 12.05 1.90 N 18 9 CD1 A TRP 7 ? ? NE1 A TRP 7 ? ? CE2 A TRP 7 ? ? 115.06 109.00 6.06 0.90 N 19 9 NE1 A TRP 7 ? ? CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? 99.49 107.30 -7.81 1.00 N 20 9 CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? CG A TRP 7 ? ? 112.89 107.30 5.59 0.80 N 21 9 OE1 A GLU 13 ? ? CD A GLU 13 ? ? OE2 A GLU 13 ? ? 115.82 123.30 -7.48 1.20 N 22 9 CG1 A VAL 14 ? ? CB A VAL 14 ? ? CG2 A VAL 14 ? ? 101.28 110.90 -9.62 1.60 N 23 9 CB A TYR 15 ? ? CG A TYR 15 ? ? CD1 A TYR 15 ? ? 116.00 121.00 -5.00 0.60 N 24 10 CZ3 A TRP 7 ? ? CH2 A TRP 7 ? ? CZ2 A TRP 7 ? ? 114.38 121.60 -7.22 1.20 N 25 10 CB A TYR 15 ? ? CG A TYR 15 ? ? CD2 A TYR 15 ? ? 117.27 121.00 -3.73 0.60 N 26 10 CA A CYS 18 ? ? CB A CYS 18 ? ? SG A CYS 18 ? ? 120.97 114.20 6.77 1.10 N 27 11 CB A TRP 7 ? ? CA A TRP 7 ? ? C A TRP 7 ? ? 125.31 110.40 14.91 2.00 N 28 11 OE1 A GLU 11 ? ? CD A GLU 11 ? ? OE2 A GLU 11 ? ? 112.70 123.30 -10.60 1.20 N 29 11 OE1 A GLU 13 ? ? CD A GLU 13 ? ? OE2 A GLU 13 ? ? 131.70 123.30 8.40 1.20 N 30 12 CA A TRP 7 ? ? CB A TRP 7 ? ? CG A TRP 7 ? ? 128.56 113.70 14.86 1.90 N 31 13 CB A TRP 7 ? ? CA A TRP 7 ? ? C A TRP 7 ? ? 124.42 110.40 14.02 2.00 N 32 13 CA A CYS 18 ? ? CB A CYS 18 ? ? SG A CYS 18 ? ? 120.95 114.20 6.75 1.10 N 33 14 CB A TYR 15 ? ? CG A TYR 15 ? ? CD1 A TYR 15 ? ? 116.29 121.00 -4.71 0.60 N 34 15 CA A CYS 12 ? ? CB A CYS 12 ? ? SG A CYS 12 ? ? 124.32 114.20 10.12 1.10 N 35 15 CD1 A TYR 15 ? ? CG A TYR 15 ? ? CD2 A TYR 15 ? ? 125.71 117.90 7.81 1.10 N 36 15 CB A TYR 15 ? ? CG A TYR 15 ? ? CD1 A TYR 15 ? ? 115.77 121.00 -5.23 0.60 N 37 15 CG A TYR 15 ? ? CD2 A TYR 15 ? ? CE2 A TYR 15 ? ? 113.33 121.30 -7.97 0.80 N 38 15 CD1 A TYR 15 ? ? CE1 A TYR 15 ? ? CZ A TYR 15 ? ? 113.95 119.80 -5.85 0.90 N 39 16 CB A TYR 15 ? ? CG A TYR 15 ? ? CD1 A TYR 15 ? ? 113.47 121.00 -7.53 0.60 N 40 16 CG A TYR 15 ? ? CD1 A TYR 15 ? ? CE1 A TYR 15 ? ? 116.36 121.30 -4.94 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 3 ? ? -79.11 -70.12 2 1 LYS A 17 ? ? -140.29 -43.72 3 2 LEU A 3 ? ? -99.64 -69.06 4 2 TYR A 15 ? ? -152.87 -22.54 5 2 LYS A 17 ? ? -129.24 -118.41 6 3 LEU A 3 ? ? -92.16 -77.45 7 3 GLU A 13 ? ? -68.10 97.25 8 4 LYS A 17 ? ? -136.64 -144.54 9 6 LEU A 3 ? ? -90.09 -61.22 10 6 VAL A 14 ? ? -55.01 98.54 11 7 SER A 2 ? ? -145.85 -55.57 12 7 LYS A 17 ? ? -130.53 -44.70 13 8 LEU A 3 ? ? -95.57 -70.77 14 8 LYS A 17 ? ? -157.32 -22.35 15 9 LEU A 3 ? ? -94.95 -61.50 16 9 VAL A 14 ? ? -42.71 102.13 17 9 LYS A 17 ? ? -133.96 -61.74 18 9 PRO A 20 ? ? -56.68 108.57 19 10 LEU A 3 ? ? -95.69 -62.25 20 10 LYS A 17 ? ? -129.37 -51.76 21 11 LEU A 3 ? ? -96.26 -61.33 22 11 VAL A 14 ? ? -41.97 99.04 23 11 LYS A 17 ? ? -143.22 16.65 24 12 LEU A 3 ? ? -96.64 -61.48 25 13 SER A 2 ? ? -149.29 -12.56 26 13 LEU A 3 ? ? -94.12 -65.82 27 13 TYR A 15 ? ? -140.78 17.80 28 14 VAL A 14 ? ? -42.88 106.44 29 15 LEU A 3 ? ? -104.77 -66.15 30 16 LYS A 17 ? ? -130.85 -67.91 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLU A 4 ? ? GLN A 5 ? ? -142.41 2 1 PRO A 19 ? ? PRO A 20 ? ? -129.51 3 2 GLU A 4 ? ? GLN A 5 ? ? -138.80 4 2 CYS A 12 ? ? GLU A 13 ? ? 140.41 5 2 GLU A 13 ? ? VAL A 14 ? ? -149.99 6 2 VAL A 14 ? ? TYR A 15 ? ? 149.56 7 2 PRO A 19 ? ? PRO A 20 ? ? -117.89 8 3 GLU A 4 ? ? GLN A 5 ? ? -135.54 9 3 TRP A 7 ? ? AIB A 8 ? ? 142.57 10 3 CYS A 12 ? ? GLU A 13 ? ? 138.88 11 3 VAL A 14 ? ? TYR A 15 ? ? 125.66 12 3 PRO A 19 ? ? PRO A 20 ? ? -126.67 13 4 SER A 2 ? ? LEU A 3 ? ? -137.84 14 4 LEU A 3 ? ? GLU A 4 ? ? 142.34 15 4 GLU A 4 ? ? GLN A 5 ? ? -126.31 16 4 CYS A 12 ? ? GLU A 13 ? ? 144.42 17 4 GLU A 13 ? ? VAL A 14 ? ? -145.63 18 4 PRO A 19 ? ? PRO A 20 ? ? -102.34 19 5 GLU A 4 ? ? GLN A 5 ? ? -127.87 20 5 GLU A 11 ? ? CYS A 12 ? ? 149.55 21 5 CYS A 12 ? ? GLU A 13 ? ? 144.12 22 5 GLU A 13 ? ? VAL A 14 ? ? -144.88 23 5 VAL A 14 ? ? TYR A 15 ? ? 144.96 24 6 GLU A 4 ? ? GLN A 5 ? ? -142.06 25 6 VAL A 14 ? ? TYR A 15 ? ? 117.90 26 6 PRO A 19 ? ? PRO A 20 ? ? -136.78 27 7 GLU A 4 ? ? GLN A 5 ? ? -139.13 28 7 CYS A 12 ? ? GLU A 13 ? ? 133.72 29 7 GLU A 13 ? ? VAL A 14 ? ? -144.53 30 7 GLY A 16 ? ? LYS A 17 ? ? -142.96 31 7 PRO A 19 ? ? PRO A 20 ? ? -146.41 32 8 GLU A 4 ? ? GLN A 5 ? ? -137.28 33 8 CYS A 12 ? ? GLU A 13 ? ? 144.38 34 8 GLU A 13 ? ? VAL A 14 ? ? -136.19 35 8 VAL A 14 ? ? TYR A 15 ? ? 142.14 36 8 PRO A 19 ? ? PRO A 20 ? ? -136.64 37 9 GLU A 4 ? ? GLN A 5 ? ? -142.96 38 10 GLU A 4 ? ? GLN A 5 ? ? -140.99 39 10 CYS A 12 ? ? GLU A 13 ? ? 147.75 40 10 GLU A 13 ? ? VAL A 14 ? ? -135.09 41 10 PRO A 19 ? ? PRO A 20 ? ? -117.27 42 11 GLU A 4 ? ? GLN A 5 ? ? -148.99 43 11 GLU A 13 ? ? VAL A 14 ? ? -143.24 44 12 GLU A 13 ? ? VAL A 14 ? ? -147.33 45 12 VAL A 14 ? ? TYR A 15 ? ? 145.51 46 12 PRO A 19 ? ? PRO A 20 ? ? -144.15 47 13 GLU A 4 ? ? GLN A 5 ? ? -141.37 48 13 GLU A 11 ? ? CYS A 12 ? ? 142.38 49 13 CYS A 12 ? ? GLU A 13 ? ? 146.51 50 13 GLU A 13 ? ? VAL A 14 ? ? -118.74 51 13 PRO A 19 ? ? PRO A 20 ? ? -123.26 52 14 GLU A 4 ? ? GLN A 5 ? ? -146.28 53 14 GLU A 13 ? ? VAL A 14 ? ? -145.13 54 14 VAL A 14 ? ? TYR A 15 ? ? 143.60 55 14 PRO A 19 ? ? PRO A 20 ? ? -139.16 56 15 TRP A 7 ? ? AIB A 8 ? ? 145.78 57 15 CYS A 12 ? ? GLU A 13 ? ? 139.15 58 15 GLU A 13 ? ? VAL A 14 ? ? -121.50 59 15 PRO A 19 ? ? PRO A 20 ? ? -136.39 60 16 LEU A 3 ? ? GLU A 4 ? ? 149.00 61 16 GLU A 4 ? ? GLN A 5 ? ? -119.90 62 16 CYS A 12 ? ? GLU A 13 ? ? 137.53 63 16 VAL A 14 ? ? TYR A 15 ? ? 147.15 64 16 PRO A 19 ? ? PRO A 20 ? ? -133.74 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 2 TRP A 7 ? ? -10.13 2 4 BVK A 1 ? ? -11.06 3 6 BVK A 1 ? ? 15.28 4 7 BVK A 1 ? ? -12.02 5 10 TRP A 7 ? ? -11.64 6 15 BVK A 1 ? ? 11.54 7 16 VAL A 14 ? ? -10.71 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 15 ? ? 0.082 'SIDE CHAIN' 2 2 TYR A 15 ? ? 0.117 'SIDE CHAIN' 3 3 TYR A 15 ? ? 0.071 'SIDE CHAIN' 4 8 TYR A 15 ? ? 0.142 'SIDE CHAIN' 5 11 TYR A 15 ? ? 0.075 'SIDE CHAIN' 6 13 TYR A 15 ? ? 0.085 'SIDE CHAIN' 7 15 GLU A 6 ? ? 0.075 'SIDE CHAIN' 8 15 TYR A 15 ? ? 0.124 'SIDE CHAIN' # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #