HEADER NUCLEAR PROTEIN 30-JUN-22 8DJH TITLE TERNARY COMPLEX OF SUMO1 WITH A PHOSPHOMIMETIC SIM OF PML AND ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 5 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 6 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PML 4SD; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO1, PML NUCLEAR BODIES, ZINC, AUTO-INHIBITION, DAXX, NUCLEAR KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.LUSSIER-PRICE,H.M.WAHBA,X.H.MASCLE,L.CAPPADOCIA,V.BOURDEAU, AUTHOR 2 C.GAGNON,S.IGELMANN,K.SAKAGUCHI,G.FERBEYRE,J.G.OMICHINSKI REVDAT 3 18-OCT-23 8DJH 1 REMARK REVDAT 2 24-AUG-22 8DJH 1 JRNL REVDAT 1 10-AUG-22 8DJH 0 JRNL AUTH M.LUSSIER-PRICE,H.M.WAHBA,X.H.MASCLE,L.CAPPADOCIA, JRNL AUTH 2 V.BOURDEAU,C.GAGNON,S.IGELMANN,K.SAKAGUCHI,G.FERBEYRE, JRNL AUTH 3 J.G.OMICHINSKI JRNL TITL ZINC CONTROLS PML NUCLEAR BODY FORMATION THROUGH REGULATION JRNL TITL 2 OF A PARALOG SPECIFIC AUTO-INHIBITION IN SUMO1. JRNL REF NUCLEIC ACIDS RES. V. 50 8331 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35871297 JRNL DOI 10.1093/NAR/GKAC620 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 19762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0400 - 4.2700 0.90 1239 144 0.2066 0.2043 REMARK 3 2 4.2600 - 3.3900 0.91 1243 145 0.1650 0.1815 REMARK 3 3 3.3900 - 2.9600 0.94 1290 151 0.1795 0.2125 REMARK 3 4 2.9600 - 2.6900 0.94 1312 144 0.1873 0.2402 REMARK 3 5 2.6900 - 2.5000 0.95 1290 137 0.1800 0.2234 REMARK 3 6 2.5000 - 2.3500 0.95 1330 151 0.1939 0.2144 REMARK 3 7 2.3500 - 2.2300 0.92 1251 133 0.2759 0.3714 REMARK 3 8 2.2300 - 2.1400 0.94 1335 139 0.2248 0.2494 REMARK 3 9 2.1400 - 2.0500 0.97 1345 147 0.2069 0.2240 REMARK 3 10 2.0500 - 1.9800 0.96 1306 152 0.2243 0.2589 REMARK 3 11 1.9800 - 1.9200 0.96 1337 153 0.2718 0.2887 REMARK 3 12 1.9200 - 1.8700 0.93 1293 146 0.3454 0.4722 REMARK 3 13 1.8700 - 1.8200 0.93 1276 135 0.2637 0.2493 REMARK 3 14 1.8200 - 1.7700 0.68 939 99 0.2774 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -0.2288 7.7241 8.5711 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0429 REMARK 3 T33: 0.0596 T12: -0.0160 REMARK 3 T13: -0.0050 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.3702 L22: 1.7388 REMARK 3 L33: 1.2803 L12: -0.2133 REMARK 3 L13: 0.1861 L23: 0.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0098 S13: -0.0545 REMARK 3 S21: 0.0728 S22: -0.0120 S23: 0.0847 REMARK 3 S31: 0.1095 S32: -0.1614 S33: 0.1191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.9482 16.6320 10.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.1298 REMARK 3 T33: 0.1624 T12: -0.0140 REMARK 3 T13: 0.0109 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.3172 L22: 3.0426 REMARK 3 L33: 2.2531 L12: -0.2809 REMARK 3 L13: -0.0053 L23: 0.3722 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.0116 S13: 0.0073 REMARK 3 S21: 0.4059 S22: -0.0370 S23: 0.4893 REMARK 3 S31: 0.0335 S32: -0.4721 S33: -0.1140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000256124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 38.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6V7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 19 TO 31 % (W/V) REMARK 280 PEG 3350, AND 1-5 MM ZINC CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.88800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.81600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.81600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.88800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 THR A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 18 REMARK 465 ASP B 19 REMARK 465 ASP B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 72 HD2 HIS A 75 1.33 REMARK 500 O ASP B 15 H ASP B 17 1.47 REMARK 500 O HOH A 236 O HOH A 275 1.79 REMARK 500 O HOH B 122 O HOH B 125 1.90 REMARK 500 O HOH A 294 O HOH A 297 1.95 REMARK 500 OE1 GLN A 29 NE2 GLN A 92 2.01 REMARK 500 OD2 ASP A 15 O HOH A 201 2.03 REMARK 500 N ALA B 7 O HOH B 101 2.04 REMARK 500 O HOH B 111 O HOH B 123 2.07 REMARK 500 O HOH A 208 O HOH A 272 2.08 REMARK 500 O HOH A 278 O HOH A 287 2.10 REMARK 500 O HOH A 201 O HOH B 110 2.14 REMARK 500 O HOH A 288 O HOH A 289 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 69 C - N - CA ANGL. DEV. = 18.3 DEGREES REMARK 500 GLN A 69 O - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 16 -51.00 53.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASP A 15 OD1 97.3 REMARK 620 3 ASP B 17 OD1 121.3 87.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE2 REMARK 620 2 HIS A 35 NE2 98.3 REMARK 620 3 GLU B 9 OE1 104.8 92.9 REMARK 620 4 GLU B 9 OE2 105.1 143.1 53.9 REMARK 620 5 HOH B 113 O 114.9 110.3 129.3 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 43 NE2 REMARK 620 2 GLU A 84 OE2 54.8 REMARK 620 3 GLU A 85 OE1 55.9 6.4 REMARK 620 4 HOH A 275 O 50.7 4.1 8.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 HOH A 205 O 88.7 REMARK 620 3 HOH A 217 O 92.9 95.3 REMARK 620 4 HOH A 239 O 91.9 172.3 92.4 REMARK 620 5 HOH A 265 O 85.0 99.8 164.7 72.6 REMARK 620 6 HOH A 283 O 174.1 94.3 91.9 84.5 89.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UYZ RELATED DB: PDB REMARK 900 RELATED ID: 6UYY RELATED DB: PDB REMARK 900 RELATED ID: 6UYX RELATED DB: PDB REMARK 900 RELATED ID: 6UYV RELATED DB: PDB REMARK 900 RELATED ID: 6UYU RELATED DB: PDB REMARK 900 RELATED ID: 6UYT RELATED DB: PDB REMARK 900 RELATED ID: 6UYS RELATED DB: PDB REMARK 900 RELATED ID: 6UYR RELATED DB: PDB REMARK 900 RELATED ID: 6UYQ RELATED DB: PDB REMARK 900 RELATED ID: 6UYP RELATED DB: PDB REMARK 900 RELATED ID: 6UYO RELATED DB: PDB REMARK 900 RELATED ID: 6V7S RELATED DB: PDB REMARK 900 RELATED ID: 6V7R RELATED DB: PDB REMARK 900 RELATED ID: 6V7Q RELATED DB: PDB REMARK 900 RELATED ID: 6V7P RELATED DB: PDB DBREF 8DJH A 2 97 UNP P63165 SUMO1_HUMAN 2 97 DBREF 8DJH B 1 29 PDB 8DJH 8DJH 1 29 SEQADV 8DJH GLY A 1 UNP P63165 EXPRESSION TAG SEQADV 8DJH ALA A 52 UNP P63165 CYS 52 CONFLICT SEQRES 1 A 97 GLY SER ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU SEQRES 2 A 97 GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL SEQRES 3 A 97 ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS SEQRES 4 A 97 MET THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA SEQRES 5 A 97 GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU SEQRES 6 A 97 PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS SEQRES 7 A 97 GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR SEQRES 8 A 97 GLN GLU GLN THR GLY GLY SEQRES 1 B 29 GLY SER GLY ALA GLY GLU ALA GLU GLU ARG VAL VAL VAL SEQRES 2 B 29 ILE ASP ASP ASP GLU ASP ASP ASP ALA GLU ASN SER SER SEQRES 3 B 29 SER ARG TYR HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET ZN A 104 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *128(H2 O) HELIX 1 AA1 THR A 10 GLU A 18 1 9 HELIX 2 AA2 LEU A 44 GLY A 56 1 13 HELIX 3 AA3 PRO A 58 ASN A 60 5 3 HELIX 4 AA4 THR A 76 GLY A 81 1 6 SHEET 1 AA1 6 GLN A 69 ARG A 70 0 SHEET 2 AA1 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 AA1 6 VAL A 87 GLN A 92 -1 O GLU A 89 N LEU A 65 SHEET 4 AA1 6 ILE A 22 ILE A 27 1 N LYS A 25 O ILE A 88 SHEET 5 AA1 6 GLU A 33 VAL A 38 -1 O PHE A 36 N LEU A 24 SHEET 6 AA1 6 VAL B 11 VAL B 13 1 O VAL B 12 N HIS A 35 LINK OE2 GLU A 11 ZN ZN A 101 1555 1555 2.19 LINK OD1 ASP A 15 ZN ZN A 101 1555 1555 2.21 LINK OE2 GLU A 33 ZN ZN A 103 1555 1555 1.93 LINK NE2 HIS A 35 ZN ZN A 103 1555 1555 2.13 LINK NE2 HIS A 43 ZN ZN A 102 1555 3545 2.17 LINK OE2 GLU A 84 ZN ZN A 102 1555 1555 2.01 LINK OE1 GLU A 85 ZN ZN A 102 1555 1555 2.00 LINK OD1 ASP A 86 ZN ZN A 104 1555 1555 2.15 LINK ZN ZN A 101 OD1 ASP B 17 1555 1555 2.33 LINK ZN ZN A 102 O HOH A 275 1555 1555 2.29 LINK ZN ZN A 103 OE1 GLU B 9 1555 1555 2.43 LINK ZN ZN A 103 OE2 GLU B 9 1555 1555 2.40 LINK ZN ZN A 103 O HOH B 113 1555 1555 2.13 LINK ZN ZN A 104 O HOH A 205 1555 1555 2.23 LINK ZN ZN A 104 O HOH A 217 1555 1555 2.55 LINK ZN ZN A 104 O HOH A 239 1555 1555 2.46 LINK ZN ZN A 104 O HOH A 265 1555 1555 2.34 LINK ZN ZN A 104 O HOH A 283 1555 1555 2.31 CRYST1 37.776 47.460 63.632 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015715 0.00000