HEADER ANTITOXIN 08-JUL-22 8DMQ TITLE CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA MACRODOMAIN MAVL IN TITLE 2 COMPLEX WITH UBIQUITIN VINYL METHYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAVL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBB; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACRODOMAIN, ADP-RIBOSE, COVALENT COMPLEX, GLYCOHYDROLASE, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.DAS REVDAT 4 24-JUL-24 8DMQ 1 JRNL REVDAT 3 15-NOV-23 8DMQ 1 LINK ATOM REVDAT 2 25-OCT-23 8DMQ 1 REMARK REVDAT 1 12-JUL-23 8DMQ 0 JRNL AUTH Z.ZHANG,J.FU,J.G.M.RACK,C.LI,J.VOORNEVELD,D.V.FILIPPOV, JRNL AUTH 2 I.AHEL,Z.Q.LUO,C.DAS JRNL TITL LEGIONELLA METAEFFECTOR MAVL REVERSES UBIQUITIN JRNL TITL 2 ADP-RIBOSYLATION VIA A CONSERVED ARGININE-SPECIFIC JRNL TITL 3 MACRODOMAIN. JRNL REF NAT COMMUN V. 15 2452 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38503748 JRNL DOI 10.1038/S41467-024-46649-2 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 73645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.7100 - 6.5000 1.00 2920 158 0.1609 0.1728 REMARK 3 2 6.5000 - 5.1600 0.99 2759 143 0.1693 0.1657 REMARK 3 3 5.1600 - 4.5100 1.00 2767 119 0.1280 0.1464 REMARK 3 4 4.5100 - 4.1000 1.00 2790 106 0.1267 0.1398 REMARK 3 5 4.1000 - 3.8000 1.00 2720 142 0.1447 0.1668 REMARK 3 6 3.8000 - 3.5800 1.00 2721 149 0.1607 0.2108 REMARK 3 7 3.5800 - 3.4000 1.00 2687 140 0.1650 0.2102 REMARK 3 8 3.4000 - 3.2500 1.00 2733 132 0.1850 0.2418 REMARK 3 9 3.2500 - 3.1300 1.00 2670 150 0.1968 0.2892 REMARK 3 10 3.1300 - 3.0200 0.98 2608 152 0.2212 0.2509 REMARK 3 11 3.0200 - 2.9200 1.00 2694 160 0.2111 0.2265 REMARK 3 12 2.9200 - 2.8400 1.00 2698 131 0.2135 0.2377 REMARK 3 13 2.8400 - 2.7700 1.00 2675 145 0.2061 0.2420 REMARK 3 14 2.7700 - 2.7000 1.00 2675 153 0.2119 0.2403 REMARK 3 15 2.7000 - 2.6400 1.00 2656 140 0.2023 0.2266 REMARK 3 16 2.6400 - 2.5800 1.00 2642 139 0.2166 0.2573 REMARK 3 17 2.5800 - 2.5300 1.00 2707 123 0.2054 0.2503 REMARK 3 18 2.5300 - 2.4800 1.00 2697 117 0.2247 0.2750 REMARK 3 19 2.4800 - 2.4400 1.00 2666 152 0.2236 0.2649 REMARK 3 20 2.4400 - 2.4000 1.00 2709 131 0.2170 0.2508 REMARK 3 21 2.4000 - 2.3600 1.00 2596 135 0.2147 0.2621 REMARK 3 22 2.3600 - 2.3200 1.00 2724 107 0.2242 0.2277 REMARK 3 23 2.3200 - 2.2900 1.00 2666 157 0.2194 0.2842 REMARK 3 24 2.2900 - 2.2500 1.00 2654 142 0.2281 0.2315 REMARK 3 25 2.2500 - 2.2200 1.00 2629 154 0.2394 0.2590 REMARK 3 26 2.2200 - 2.1950 0.96 2569 138 0.2361 0.3082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.4168 25.5385 -29.5408 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: 0.2618 REMARK 3 T33: 0.3433 T12: 0.0015 REMARK 3 T13: -0.0349 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3667 L22: 0.8108 REMARK 3 L33: 0.8879 L12: 0.1877 REMARK 3 L13: -0.2574 L23: -0.4838 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.0377 S13: 0.0607 REMARK 3 S21: 0.0377 S22: 0.0238 S23: -0.1280 REMARK 3 S31: -0.1467 S32: 0.0992 S33: 0.0469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.195 REMARK 200 RESOLUTION RANGE LOW (A) : 69.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OMI, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.71433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.42867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.42867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.71433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 PRO A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 SER A 41 REMARK 465 SER A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 ALA A 413 REMARK 465 LYS A 414 REMARK 465 VAL A 415 REMARK 465 GLU A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 THR A 419 REMARK 465 THR A 420 REMARK 465 ILE A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 LEU A 424 REMARK 465 VAL A 425 REMARK 465 ARG A 426 REMARK 465 SER A 427 REMARK 465 MET A 428 REMARK 465 PHE A 429 REMARK 465 SER A 430 REMARK 465 LEU A 431 REMARK 465 PHE A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 SER A 435 REMARK 465 GLY B 37 REMARK 465 PRO B 38 REMARK 465 LEU B 39 REMARK 465 GLY B 40 REMARK 465 SER B 411 REMARK 465 LYS B 412 REMARK 465 ALA B 413 REMARK 465 LYS B 414 REMARK 465 VAL B 415 REMARK 465 GLU B 416 REMARK 465 THR B 417 REMARK 465 THR B 418 REMARK 465 THR B 419 REMARK 465 THR B 420 REMARK 465 ILE B 421 REMARK 465 SER B 422 REMARK 465 ASP B 423 REMARK 465 LEU B 424 REMARK 465 VAL B 425 REMARK 465 ARG B 426 REMARK 465 SER B 427 REMARK 465 MET B 428 REMARK 465 PHE B 429 REMARK 465 SER B 430 REMARK 465 LEU B 431 REMARK 465 PHE B 432 REMARK 465 SER B 433 REMARK 465 HIS B 434 REMARK 465 SER B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 SER B 41 OG REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 470 LYS B 371 CG CD CE NZ REMARK 470 MET B 373 CG SD CE REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 SER B 408 OG REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 8 CG CD1 CD2 REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 39 CG OD1 OD2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 ARG D 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 60 CG OD1 ND2 REMARK 470 GLN D 62 CG CD OE1 NE2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 ARG D 74 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 371 CE NZ REMARK 480 LYS B 147 CD CE NZ REMARK 480 LYS B 368 CD CE NZ REMARK 480 LYS C 33 CE NZ REMARK 480 LEU C 73 CB REMARK 480 ARG C 74 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 116 -75.95 -143.37 REMARK 500 SER A 169 -126.43 -142.64 REMARK 500 TYR A 265 -57.40 71.57 REMARK 500 LEU A 295 52.78 -102.01 REMARK 500 TRP A 314 -159.63 -97.62 REMARK 500 ASN A 322 -106.13 39.03 REMARK 500 GLN A 330 -36.09 -130.74 REMARK 500 ASP A 341 30.38 -88.73 REMARK 500 SER A 374 28.41 -142.39 REMARK 500 ASN A 388 126.00 -171.00 REMARK 500 SER B 108 -21.92 -142.47 REMARK 500 ASP B 116 -68.12 -126.97 REMARK 500 SER B 169 -125.73 -136.35 REMARK 500 TYR B 265 -66.35 70.46 REMARK 500 LEU B 295 45.38 -98.28 REMARK 500 TRP B 314 -164.06 -102.64 REMARK 500 ASN B 322 -97.47 20.82 REMARK 500 THR B 331 155.66 68.01 REMARK 500 ASP B 341 30.79 -86.64 REMARK 500 ASN B 388 118.74 -166.02 REMARK 500 THR C 9 11.50 -66.39 REMARK 500 ARG C 74 111.86 68.68 REMARK 500 ALA D 46 -123.97 49.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DMQ A 42 435 UNP Q5ZSJ1 Q5ZSJ1_LEGPH 42 435 DBREF 8DMQ B 42 435 UNP Q5ZSJ1 Q5ZSJ1_LEGPH 42 435 DBREF 8DMQ C 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF 8DMQ D 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 8DMQ GLY A 37 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ PRO A 38 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ LEU A 39 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ GLY A 40 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ SER A 41 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ GLY B 37 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ PRO B 38 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ LEU B 39 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ GLY B 40 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMQ SER B 41 UNP Q5ZSJ1 EXPRESSION TAG SEQRES 1 A 399 GLY PRO LEU GLY SER ALA TYR GLN LEU LEU LEU SER LYS SEQRES 2 A 399 GLU THR LEU ASN LYS ILE LEU GLN TYR LYS GLN ASN LEU SEQRES 3 A 399 GLU LYS GLY LEU ALA THR PRO GLY LYS PHE PHE LEU GLU SEQRES 4 A 399 GLU LEU SER LYS GLN GLU LYS SER ILE SER GLU MET ASP SEQRES 5 A 399 ILE THR THR PHE THR GLN LEU LEU ILE GLN SER LYS LYS SEQRES 6 A 399 PRO GLN VAL PHE ALA GLU SER GLN VAL TYR HIS ASP GLY SEQRES 7 A 399 THR ASP TRP THR LEU GLU GLU GLU SER ILE LEU GLY ASP SEQRES 8 A 399 VAL SER VAL ASN MET PRO VAL THR MET TYR ASN ASP GLY SEQRES 9 A 399 GLY HIS GLY SER SER PHE LYS ASN HIS PRO LYS PRO ILE SEQRES 10 A 399 SER GLY TYR LEU ALA TYR VAL PRO GLY ALA LEU LEU ALA SEQRES 11 A 399 SER GLY SER GLY PRO THR SER ASP MET LYS GLU VAL LEU SEQRES 12 A 399 ASP ASN GLY LYS LEU ASN GLN ASP LYS LEU ASN ALA LEU SEQRES 13 A 399 TYR GLU ARG ARG LEU LEU PRO GLN LEU ILE HIS PHE ASN SEQRES 14 A 399 GLU LEU ALA ARG GLN ASN GLU LYS GLN ALA ALA ILE THR SEQRES 15 A 399 ILE PRO GLY ILE GLY THR GLY CYS PHE SER GLY ALA TYR SEQRES 16 A 399 TYR ASP VAL ILE LYS PRO TYR VAL ARG ASN ALA LEU ILE SEQRES 17 A 399 HIS ILE LEU GLU LYS HIS LYS ASP SER LEU PRO TYR ILE SEQRES 18 A 399 ASP ILE ILE HIS TYR ASP PRO TYR MET GLY ASP GLU PRO SEQRES 19 A 399 ALA GLU LYS LYS ILE GLY HIS MET SER PHE ARG VAL SER SEQRES 20 A 399 PRO SER GLY VAL VAL ARG GLY THR THR GLY GLN LEU ASP SEQRES 21 A 399 TYR PRO LEU GLY SER ASN PRO ASP THR HIS ILE LEU VAL SEQRES 22 A 399 SER ILE VAL ALA TRP ASP HIS PHE SER TRP PRO GLY ASN SEQRES 23 A 399 ASP TYR TRP GLY GLY ALA ARG GLN THR ASP ASP GLY VAL SEQRES 24 A 399 LYS ALA ALA SER THR ASP THR MET GLY GLN VAL THR GLY SEQRES 25 A 399 ALA THR GLY VAL TYR ASP LYS LYS TRP GLY ARG TYR MET SEQRES 26 A 399 PRO PRO GLU SER PHE THR LYS ASP ARG LYS GLY MET SER SEQRES 27 A 399 ASP TRP GLY ASP TYR VAL ARG GLU ASN GLY ILE VAL PHE SEQRES 28 A 399 ASN GLY PRO VAL LEU ALA LEU ASP LYS SER GLY LYS LEU SEQRES 29 A 399 ASP THR LEU GLU ASN VAL ALA SER ARG SER SER LYS ALA SEQRES 30 A 399 LYS VAL GLU THR THR THR THR ILE SER ASP LEU VAL ARG SEQRES 31 A 399 SER MET PHE SER LEU PHE SER HIS SER SEQRES 1 B 399 GLY PRO LEU GLY SER ALA TYR GLN LEU LEU LEU SER LYS SEQRES 2 B 399 GLU THR LEU ASN LYS ILE LEU GLN TYR LYS GLN ASN LEU SEQRES 3 B 399 GLU LYS GLY LEU ALA THR PRO GLY LYS PHE PHE LEU GLU SEQRES 4 B 399 GLU LEU SER LYS GLN GLU LYS SER ILE SER GLU MET ASP SEQRES 5 B 399 ILE THR THR PHE THR GLN LEU LEU ILE GLN SER LYS LYS SEQRES 6 B 399 PRO GLN VAL PHE ALA GLU SER GLN VAL TYR HIS ASP GLY SEQRES 7 B 399 THR ASP TRP THR LEU GLU GLU GLU SER ILE LEU GLY ASP SEQRES 8 B 399 VAL SER VAL ASN MET PRO VAL THR MET TYR ASN ASP GLY SEQRES 9 B 399 GLY HIS GLY SER SER PHE LYS ASN HIS PRO LYS PRO ILE SEQRES 10 B 399 SER GLY TYR LEU ALA TYR VAL PRO GLY ALA LEU LEU ALA SEQRES 11 B 399 SER GLY SER GLY PRO THR SER ASP MET LYS GLU VAL LEU SEQRES 12 B 399 ASP ASN GLY LYS LEU ASN GLN ASP LYS LEU ASN ALA LEU SEQRES 13 B 399 TYR GLU ARG ARG LEU LEU PRO GLN LEU ILE HIS PHE ASN SEQRES 14 B 399 GLU LEU ALA ARG GLN ASN GLU LYS GLN ALA ALA ILE THR SEQRES 15 B 399 ILE PRO GLY ILE GLY THR GLY CYS PHE SER GLY ALA TYR SEQRES 16 B 399 TYR ASP VAL ILE LYS PRO TYR VAL ARG ASN ALA LEU ILE SEQRES 17 B 399 HIS ILE LEU GLU LYS HIS LYS ASP SER LEU PRO TYR ILE SEQRES 18 B 399 ASP ILE ILE HIS TYR ASP PRO TYR MET GLY ASP GLU PRO SEQRES 19 B 399 ALA GLU LYS LYS ILE GLY HIS MET SER PHE ARG VAL SER SEQRES 20 B 399 PRO SER GLY VAL VAL ARG GLY THR THR GLY GLN LEU ASP SEQRES 21 B 399 TYR PRO LEU GLY SER ASN PRO ASP THR HIS ILE LEU VAL SEQRES 22 B 399 SER ILE VAL ALA TRP ASP HIS PHE SER TRP PRO GLY ASN SEQRES 23 B 399 ASP TYR TRP GLY GLY ALA ARG GLN THR ASP ASP GLY VAL SEQRES 24 B 399 LYS ALA ALA SER THR ASP THR MET GLY GLN VAL THR GLY SEQRES 25 B 399 ALA THR GLY VAL TYR ASP LYS LYS TRP GLY ARG TYR MET SEQRES 26 B 399 PRO PRO GLU SER PHE THR LYS ASP ARG LYS GLY MET SER SEQRES 27 B 399 ASP TRP GLY ASP TYR VAL ARG GLU ASN GLY ILE VAL PHE SEQRES 28 B 399 ASN GLY PRO VAL LEU ALA LEU ASP LYS SER GLY LYS LEU SEQRES 29 B 399 ASP THR LEU GLU ASN VAL ALA SER ARG SER SER LYS ALA SEQRES 30 B 399 LYS VAL GLU THR THR THR THR ILE SER ASP LEU VAL ARG SEQRES 31 B 399 SER MET PHE SER LEU PHE SER HIS SER SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 D 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET FLC A 501 13 HET FLC A 502 13 HET FLC A 503 13 HET FLC B 701 13 HET EDO B 702 4 HET GVE C 101 8 HET EDO C 102 4 HET EDO C 103 4 HET FLC C 104 13 HET 1PE D 601 16 HET GVE D 602 8 HETNAM FLC CITRATE ANION HETNAM EDO 1,2-ETHANEDIOL HETNAM GVE METHYL 4-AMINOBUTANOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 5 FLC 5(C6 H5 O7 3-) FORMUL 9 EDO 3(C2 H6 O2) FORMUL 10 GVE 2(C5 H11 N O2) FORMUL 14 1PE C10 H22 O6 FORMUL 16 HOH *392(H2 O) HELIX 1 AA1 SER A 48 LYS A 64 1 17 HELIX 2 AA2 GLY A 70 LYS A 79 1 10 HELIX 3 AA3 ASP A 88 SER A 99 1 12 HELIX 4 AA4 THR A 118 GLY A 126 1 9 HELIX 5 AA5 THR A 172 VAL A 178 1 7 HELIX 6 AA6 ASN A 185 ASN A 211 1 27 HELIX 7 AA7 GLY A 225 ALA A 230 5 6 HELIX 8 AA8 TYR A 231 HIS A 250 1 20 HELIX 9 AA9 LYS A 251 LEU A 254 5 4 HELIX 10 AB1 GLY A 321 GLY A 327 5 7 HELIX 11 AB2 THR A 331 SER A 339 1 9 HELIX 12 AB3 ASP A 341 GLY A 348 1 8 HELIX 13 AB4 PRO A 363 LYS A 371 1 9 HELIX 14 AB5 ASP A 375 GLY A 384 1 10 HELIX 15 AB6 LEU A 403 SER A 408 1 6 HELIX 16 AB7 LYS B 49 GLY B 65 1 17 HELIX 17 AB8 GLY B 70 SER B 78 1 9 HELIX 18 AB9 ASP B 88 GLN B 98 1 11 HELIX 19 AC1 THR B 118 GLY B 126 1 9 HELIX 20 AC2 THR B 172 VAL B 178 1 7 HELIX 21 AC3 ASN B 185 ASN B 211 1 27 HELIX 22 AC4 GLY B 225 TYR B 232 5 8 HELIX 23 AC5 VAL B 234 LYS B 251 1 18 HELIX 24 AC6 ASP B 252 LEU B 254 5 3 HELIX 25 AC7 GLY B 321 GLY B 327 5 7 HELIX 26 AC8 GLN B 330 SER B 339 1 10 HELIX 27 AC9 ASP B 341 GLY B 348 1 8 HELIX 28 AD1 PRO B 363 LYS B 368 1 6 HELIX 29 AD2 ASP B 375 GLY B 384 1 10 HELIX 30 AD3 THR B 402 SER B 410 1 9 HELIX 31 AD4 THR C 22 GLY C 35 1 14 HELIX 32 AD5 PRO C 37 ASP C 39 5 3 HELIX 33 AD6 THR D 22 GLY D 35 1 14 HELIX 34 AD7 PRO D 37 GLN D 41 5 5 SHEET 1 AA110 ALA A 271 ILE A 275 0 SHEET 2 AA110 MET A 278 VAL A 282 -1 O PHE A 280 N LYS A 273 SHEET 3 AA110 ILE A 257 ASP A 263 1 N ILE A 260 O ARG A 281 SHEET 4 AA110 GLN A 214 PRO A 220 1 N ILE A 217 O HIS A 261 SHEET 5 AA110 HIS A 306 TRP A 314 1 O ILE A 311 N THR A 218 SHEET 6 AA110 ASN A 148 PRO A 161 1 N VAL A 160 O VAL A 312 SHEET 7 AA110 SER A 129 ASN A 138 -1 N MET A 136 O ILE A 153 SHEET 8 AA110 GLN A 44 LEU A 47 -1 N LEU A 46 O SER A 129 SHEET 9 AA110 VAL A 391 LEU A 394 1 O LEU A 392 N LEU A 45 SHEET 10 AA110 LEU A 400 THR A 402 -1 O ASP A 401 N ALA A 393 SHEET 1 AA2 2 LEU A 179 ASP A 180 0 SHEET 2 AA2 2 LYS A 183 LEU A 184 -1 O LYS A 183 N ASP A 180 SHEET 1 AA3 2 VAL A 352 ASP A 354 0 SHEET 2 AA3 2 ARG A 359 MET A 361 -1 O MET A 361 N VAL A 352 SHEET 1 AA410 ALA B 271 ILE B 275 0 SHEET 2 AA410 MET B 278 VAL B 282 -1 O PHE B 280 N LYS B 273 SHEET 3 AA410 ILE B 257 ASP B 263 1 N ILE B 260 O ARG B 281 SHEET 4 AA410 GLN B 214 PRO B 220 1 N ILE B 217 O HIS B 261 SHEET 5 AA410 HIS B 306 TRP B 314 1 O VAL B 309 N ALA B 216 SHEET 6 AA410 ASN B 148 PRO B 161 1 N VAL B 160 O VAL B 312 SHEET 7 AA410 SER B 129 ASN B 138 -1 N MET B 136 O ILE B 153 SHEET 8 AA410 GLN B 44 SER B 48 -1 N GLN B 44 O ASN B 131 SHEET 9 AA410 VAL B 391 LEU B 394 1 O LEU B 392 N LEU B 45 SHEET 10 AA410 LEU B 400 ASP B 401 -1 O ASP B 401 N ALA B 393 SHEET 1 AA5 2 LEU B 179 ASP B 180 0 SHEET 2 AA5 2 LYS B 183 LEU B 184 -1 O LYS B 183 N ASP B 180 SHEET 1 AA6 2 VAL B 352 ASP B 354 0 SHEET 2 AA6 2 ARG B 359 MET B 361 -1 O MET B 361 N VAL B 352 SHEET 1 AA7 5 THR C 12 GLU C 16 0 SHEET 2 AA7 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA7 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA7 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA7 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA8 5 THR D 12 GLU D 16 0 SHEET 2 AA8 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 AA8 5 THR D 66 VAL D 70 1 O LEU D 67 N PHE D 4 SHEET 4 AA8 5 ARG D 42 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA8 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 226 CB GVE C 101 1555 1555 1.79 LINK SG CYS B 226 CB GVE D 602 1555 1555 1.85 LINK C GLY C 75 N GVE C 101 1555 1555 1.32 LINK C GLY D 75 N GVE D 602 1555 1555 1.33 CRYST1 108.719 108.719 209.143 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009198 0.005310 0.000000 0.00000 SCALE2 0.000000 0.010621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004781 0.00000