HEADER ANTITOXIN 08-JUL-22 8DMS TITLE CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA MACRODOMAIN MAVL IN TITLE 2 COMPLEX WITH UBIQUITIN VINYL METHYL ESTER SOAKED WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAVL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBB; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACRODOMAIN, ADP-RIBOSE, COVALENT COMPLEX, GLYCOHYDROLASE, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.DAS REVDAT 4 24-JUL-24 8DMS 1 JRNL REVDAT 3 15-NOV-23 8DMS 1 LINK ATOM REVDAT 2 25-OCT-23 8DMS 1 REMARK REVDAT 1 12-JUL-23 8DMS 0 JRNL AUTH Z.ZHANG,J.FU,J.G.M.RACK,C.LI,J.VOORNEVELD,D.V.FILIPPOV, JRNL AUTH 2 I.AHEL,Z.Q.LUO,C.DAS JRNL TITL LEGIONELLA METAEFFECTOR MAVL REVERSES UBIQUITIN JRNL TITL 2 ADP-RIBOSYLATION VIA A CONSERVED ARGININE-SPECIFIC JRNL TITL 3 MACRODOMAIN. JRNL REF NAT COMMUN V. 15 2452 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38503748 JRNL DOI 10.1038/S41467-024-46649-2 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 78945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.510 REMARK 3 FREE R VALUE TEST SET COUNT : 3804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1000 - 6.4400 1.00 5446 146 0.1585 0.1720 REMARK 3 2 6.4400 - 5.1200 1.00 5470 134 0.1507 0.1690 REMARK 3 3 5.1200 - 4.4700 1.00 5485 134 0.1162 0.1497 REMARK 3 4 4.4700 - 4.0600 1.00 5455 142 0.1177 0.1379 REMARK 3 5 4.0600 - 3.7700 1.00 5447 140 0.1281 0.1773 REMARK 3 6 3.7700 - 3.5500 1.00 5502 139 0.1455 0.1974 REMARK 3 7 3.5500 - 3.3700 1.00 5424 136 0.1543 0.1857 REMARK 3 8 3.3700 - 3.2200 1.00 5477 142 0.1658 0.2016 REMARK 3 9 3.2200 - 3.1000 1.00 5424 138 0.1747 0.2560 REMARK 3 10 3.1000 - 2.9900 1.00 5490 140 0.1923 0.2197 REMARK 3 11 2.9900 - 2.9000 1.00 5520 142 0.1996 0.2758 REMARK 3 12 2.9000 - 2.8200 1.00 5449 138 0.1979 0.2501 REMARK 3 13 2.8200 - 2.7400 1.00 5434 144 0.2002 0.2244 REMARK 3 14 2.7400 - 2.6800 1.00 5474 142 0.2041 0.2257 REMARK 3 15 2.6800 - 2.6200 1.00 5495 136 0.2089 0.2195 REMARK 3 16 2.6200 - 2.5600 1.00 5453 142 0.2114 0.2694 REMARK 3 17 2.5600 - 2.5100 1.00 5433 140 0.2093 0.2854 REMARK 3 18 2.5100 - 2.4600 1.00 5483 140 0.2245 0.2686 REMARK 3 19 2.4600 - 2.4200 1.00 5425 140 0.2317 0.2490 REMARK 3 20 2.4200 - 2.3800 1.00 5497 142 0.2270 0.2335 REMARK 3 21 2.3800 - 2.3400 1.00 5482 138 0.2309 0.2572 REMARK 3 22 2.3400 - 2.3000 1.00 5484 140 0.2347 0.2340 REMARK 3 23 2.3000 - 2.2700 1.00 5390 148 0.2427 0.2941 REMARK 3 24 2.2700 - 2.2400 1.00 5466 146 0.2537 0.2514 REMARK 3 25 2.2400 - 2.2100 1.00 5501 142 0.2486 0.2667 REMARK 3 26 2.2100 - 2.1800 1.00 5418 145 0.2577 0.2682 REMARK 3 27 2.1800 - 2.1500 1.00 5457 148 0.2719 0.2629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.7557 9.8192 5.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.2837 REMARK 3 T33: 0.3307 T12: 0.0519 REMARK 3 T13: -0.0337 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.7324 L22: 0.7366 REMARK 3 L33: 1.0810 L12: -0.4031 REMARK 3 L13: 0.3862 L23: -0.5760 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.1158 S13: 0.2125 REMARK 3 S21: 0.0215 S22: -0.0754 S23: -0.0642 REMARK 3 S31: -0.2226 S32: -0.0893 S33: 0.0946 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OMI, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.84867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.69733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.69733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.84867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 PRO A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 SER A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 ALA A 413 REMARK 465 LYS A 414 REMARK 465 VAL A 415 REMARK 465 GLU A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 THR A 419 REMARK 465 THR A 420 REMARK 465 ILE A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 LEU A 424 REMARK 465 VAL A 425 REMARK 465 ARG A 426 REMARK 465 SER A 427 REMARK 465 MET A 428 REMARK 465 PHE A 429 REMARK 465 SER A 430 REMARK 465 LEU A 431 REMARK 465 PHE A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 SER A 435 REMARK 465 GLY B 37 REMARK 465 PRO B 38 REMARK 465 LEU B 39 REMARK 465 GLY B 40 REMARK 465 SER B 410 REMARK 465 SER B 411 REMARK 465 LYS B 412 REMARK 465 ALA B 413 REMARK 465 LYS B 414 REMARK 465 VAL B 415 REMARK 465 GLU B 416 REMARK 465 THR B 417 REMARK 465 THR B 418 REMARK 465 THR B 419 REMARK 465 THR B 420 REMARK 465 ILE B 421 REMARK 465 SER B 422 REMARK 465 ASP B 423 REMARK 465 LEU B 424 REMARK 465 VAL B 425 REMARK 465 ARG B 426 REMARK 465 SER B 427 REMARK 465 MET B 428 REMARK 465 PHE B 429 REMARK 465 SER B 430 REMARK 465 LEU B 431 REMARK 465 PHE B 432 REMARK 465 SER B 433 REMARK 465 HIS B 434 REMARK 465 SER B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 MET A 373 CG SD CE REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 356 CG CD CE NZ REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 LYS B 371 CG CD CE NZ REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 SER C 20 OG REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 ARG C 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 60 CG OD1 ND2 REMARK 470 GLN C 62 CG CD OE1 NE2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 73 CG CD1 CD2 REMARK 470 ARG D 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 108 -21.30 -145.47 REMARK 500 ASP A 116 -69.79 -122.23 REMARK 500 SER A 169 -126.02 -139.26 REMARK 500 TYR A 265 -67.86 66.88 REMARK 500 LEU A 295 51.10 -101.10 REMARK 500 TRP A 314 -163.76 -103.53 REMARK 500 ASN A 322 -96.09 20.34 REMARK 500 THR A 331 158.98 67.98 REMARK 500 ASP A 341 33.75 -89.78 REMARK 500 ASN A 388 119.41 -166.01 REMARK 500 SER B 108 -18.15 -141.10 REMARK 500 ASP B 116 -79.27 -142.60 REMARK 500 SER B 169 -126.65 -143.14 REMARK 500 TYR B 265 -60.55 70.15 REMARK 500 LEU B 295 51.76 -102.26 REMARK 500 ASN B 322 -106.03 38.00 REMARK 500 ASP B 341 32.55 -86.98 REMARK 500 GLN C 62 -167.96 -106.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DMS A 42 435 UNP Q5ZSJ1 Q5ZSJ1_LEGPH 42 435 DBREF 8DMS B 42 435 UNP Q5ZSJ1 Q5ZSJ1_LEGPH 42 435 DBREF 8DMS C 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF 8DMS D 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 8DMS GLY A 37 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS PRO A 38 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS LEU A 39 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS GLY A 40 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS SER A 41 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS GLY B 37 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS PRO B 38 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS LEU B 39 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS GLY B 40 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMS SER B 41 UNP Q5ZSJ1 EXPRESSION TAG SEQRES 1 A 399 GLY PRO LEU GLY SER ALA TYR GLN LEU LEU LEU SER LYS SEQRES 2 A 399 GLU THR LEU ASN LYS ILE LEU GLN TYR LYS GLN ASN LEU SEQRES 3 A 399 GLU LYS GLY LEU ALA THR PRO GLY LYS PHE PHE LEU GLU SEQRES 4 A 399 GLU LEU SER LYS GLN GLU LYS SER ILE SER GLU MET ASP SEQRES 5 A 399 ILE THR THR PHE THR GLN LEU LEU ILE GLN SER LYS LYS SEQRES 6 A 399 PRO GLN VAL PHE ALA GLU SER GLN VAL TYR HIS ASP GLY SEQRES 7 A 399 THR ASP TRP THR LEU GLU GLU GLU SER ILE LEU GLY ASP SEQRES 8 A 399 VAL SER VAL ASN MET PRO VAL THR MET TYR ASN ASP GLY SEQRES 9 A 399 GLY HIS GLY SER SER PHE LYS ASN HIS PRO LYS PRO ILE SEQRES 10 A 399 SER GLY TYR LEU ALA TYR VAL PRO GLY ALA LEU LEU ALA SEQRES 11 A 399 SER GLY SER GLY PRO THR SER ASP MET LYS GLU VAL LEU SEQRES 12 A 399 ASP ASN GLY LYS LEU ASN GLN ASP LYS LEU ASN ALA LEU SEQRES 13 A 399 TYR GLU ARG ARG LEU LEU PRO GLN LEU ILE HIS PHE ASN SEQRES 14 A 399 GLU LEU ALA ARG GLN ASN GLU LYS GLN ALA ALA ILE THR SEQRES 15 A 399 ILE PRO GLY ILE GLY THR GLY CYS PHE SER GLY ALA TYR SEQRES 16 A 399 TYR ASP VAL ILE LYS PRO TYR VAL ARG ASN ALA LEU ILE SEQRES 17 A 399 HIS ILE LEU GLU LYS HIS LYS ASP SER LEU PRO TYR ILE SEQRES 18 A 399 ASP ILE ILE HIS TYR ASP PRO TYR MET GLY ASP GLU PRO SEQRES 19 A 399 ALA GLU LYS LYS ILE GLY HIS MET SER PHE ARG VAL SER SEQRES 20 A 399 PRO SER GLY VAL VAL ARG GLY THR THR GLY GLN LEU ASP SEQRES 21 A 399 TYR PRO LEU GLY SER ASN PRO ASP THR HIS ILE LEU VAL SEQRES 22 A 399 SER ILE VAL ALA TRP ASP HIS PHE SER TRP PRO GLY ASN SEQRES 23 A 399 ASP TYR TRP GLY GLY ALA ARG GLN THR ASP ASP GLY VAL SEQRES 24 A 399 LYS ALA ALA SER THR ASP THR MET GLY GLN VAL THR GLY SEQRES 25 A 399 ALA THR GLY VAL TYR ASP LYS LYS TRP GLY ARG TYR MET SEQRES 26 A 399 PRO PRO GLU SER PHE THR LYS ASP ARG LYS GLY MET SER SEQRES 27 A 399 ASP TRP GLY ASP TYR VAL ARG GLU ASN GLY ILE VAL PHE SEQRES 28 A 399 ASN GLY PRO VAL LEU ALA LEU ASP LYS SER GLY LYS LEU SEQRES 29 A 399 ASP THR LEU GLU ASN VAL ALA SER ARG SER SER LYS ALA SEQRES 30 A 399 LYS VAL GLU THR THR THR THR ILE SER ASP LEU VAL ARG SEQRES 31 A 399 SER MET PHE SER LEU PHE SER HIS SER SEQRES 1 B 399 GLY PRO LEU GLY SER ALA TYR GLN LEU LEU LEU SER LYS SEQRES 2 B 399 GLU THR LEU ASN LYS ILE LEU GLN TYR LYS GLN ASN LEU SEQRES 3 B 399 GLU LYS GLY LEU ALA THR PRO GLY LYS PHE PHE LEU GLU SEQRES 4 B 399 GLU LEU SER LYS GLN GLU LYS SER ILE SER GLU MET ASP SEQRES 5 B 399 ILE THR THR PHE THR GLN LEU LEU ILE GLN SER LYS LYS SEQRES 6 B 399 PRO GLN VAL PHE ALA GLU SER GLN VAL TYR HIS ASP GLY SEQRES 7 B 399 THR ASP TRP THR LEU GLU GLU GLU SER ILE LEU GLY ASP SEQRES 8 B 399 VAL SER VAL ASN MET PRO VAL THR MET TYR ASN ASP GLY SEQRES 9 B 399 GLY HIS GLY SER SER PHE LYS ASN HIS PRO LYS PRO ILE SEQRES 10 B 399 SER GLY TYR LEU ALA TYR VAL PRO GLY ALA LEU LEU ALA SEQRES 11 B 399 SER GLY SER GLY PRO THR SER ASP MET LYS GLU VAL LEU SEQRES 12 B 399 ASP ASN GLY LYS LEU ASN GLN ASP LYS LEU ASN ALA LEU SEQRES 13 B 399 TYR GLU ARG ARG LEU LEU PRO GLN LEU ILE HIS PHE ASN SEQRES 14 B 399 GLU LEU ALA ARG GLN ASN GLU LYS GLN ALA ALA ILE THR SEQRES 15 B 399 ILE PRO GLY ILE GLY THR GLY CYS PHE SER GLY ALA TYR SEQRES 16 B 399 TYR ASP VAL ILE LYS PRO TYR VAL ARG ASN ALA LEU ILE SEQRES 17 B 399 HIS ILE LEU GLU LYS HIS LYS ASP SER LEU PRO TYR ILE SEQRES 18 B 399 ASP ILE ILE HIS TYR ASP PRO TYR MET GLY ASP GLU PRO SEQRES 19 B 399 ALA GLU LYS LYS ILE GLY HIS MET SER PHE ARG VAL SER SEQRES 20 B 399 PRO SER GLY VAL VAL ARG GLY THR THR GLY GLN LEU ASP SEQRES 21 B 399 TYR PRO LEU GLY SER ASN PRO ASP THR HIS ILE LEU VAL SEQRES 22 B 399 SER ILE VAL ALA TRP ASP HIS PHE SER TRP PRO GLY ASN SEQRES 23 B 399 ASP TYR TRP GLY GLY ALA ARG GLN THR ASP ASP GLY VAL SEQRES 24 B 399 LYS ALA ALA SER THR ASP THR MET GLY GLN VAL THR GLY SEQRES 25 B 399 ALA THR GLY VAL TYR ASP LYS LYS TRP GLY ARG TYR MET SEQRES 26 B 399 PRO PRO GLU SER PHE THR LYS ASP ARG LYS GLY MET SER SEQRES 27 B 399 ASP TRP GLY ASP TYR VAL ARG GLU ASN GLY ILE VAL PHE SEQRES 28 B 399 ASN GLY PRO VAL LEU ALA LEU ASP LYS SER GLY LYS LEU SEQRES 29 B 399 ASP THR LEU GLU ASN VAL ALA SER ARG SER SER LYS ALA SEQRES 30 B 399 LYS VAL GLU THR THR THR THR ILE SER ASP LEU VAL ARG SEQRES 31 B 399 SER MET PHE SER LEU PHE SER HIS SER SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 D 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET AR6 B 501 36 HET 1PE C 501 16 HET GVE C 502 8 HET GVE D 101 8 HET FLC D 102 13 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GVE METHYL 4-AMINOBUTANOATE HETNAM FLC CITRATE ANION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN 1PE PEG400 FORMUL 5 AR6 C15 H23 N5 O14 P2 FORMUL 6 1PE C10 H22 O6 FORMUL 7 GVE 2(C5 H11 N O2) FORMUL 9 FLC C6 H5 O7 3- FORMUL 10 HOH *608(H2 O) HELIX 1 AA1 SER A 48 LYS A 64 1 17 HELIX 2 AA2 GLY A 70 LYS A 79 1 10 HELIX 3 AA3 ASP A 88 GLN A 98 1 11 HELIX 4 AA4 THR A 118 GLY A 126 1 9 HELIX 5 AA5 THR A 172 VAL A 178 1 7 HELIX 6 AA6 ASN A 185 ASN A 211 1 27 HELIX 7 AA7 GLY A 225 TYR A 232 5 8 HELIX 8 AA8 VAL A 234 LYS A 251 1 18 HELIX 9 AA9 ASP A 252 LEU A 254 5 3 HELIX 10 AB1 GLY A 321 GLY A 327 5 7 HELIX 11 AB2 GLN A 330 SER A 339 1 10 HELIX 12 AB3 ASP A 341 GLY A 348 1 8 HELIX 13 AB4 PRO A 363 LYS A 368 1 6 HELIX 14 AB5 ASP A 375 GLY A 384 1 10 HELIX 15 AB6 THR A 402 ARG A 409 1 8 HELIX 16 AB7 LYS B 49 LYS B 64 1 16 HELIX 17 AB8 GLY B 70 LYS B 79 1 10 HELIX 18 AB9 ASP B 88 SER B 99 1 12 HELIX 19 AC1 THR B 118 GLY B 126 1 9 HELIX 20 AC2 THR B 172 VAL B 178 1 7 HELIX 21 AC3 ASN B 185 ASN B 211 1 27 HELIX 22 AC4 GLY B 225 TYR B 232 5 8 HELIX 23 AC5 VAL B 234 HIS B 250 1 17 HELIX 24 AC6 LYS B 251 LEU B 254 5 4 HELIX 25 AC7 GLY B 321 GLY B 327 5 7 HELIX 26 AC8 THR B 331 SER B 339 1 9 HELIX 27 AC9 ASP B 341 GLY B 348 1 8 HELIX 28 AD1 PRO B 363 ARG B 370 1 8 HELIX 29 AD2 ASP B 375 GLY B 384 1 10 HELIX 30 AD3 LEU B 403 ARG B 409 1 7 HELIX 31 AD4 THR C 22 GLY C 35 1 14 HELIX 32 AD5 PRO C 37 GLN C 41 5 5 HELIX 33 AD6 THR D 22 GLY D 35 1 14 HELIX 34 AD7 PRO D 37 ASP D 39 5 3 SHEET 1 AA110 ALA A 271 ILE A 275 0 SHEET 2 AA110 MET A 278 VAL A 282 -1 O VAL A 282 N ALA A 271 SHEET 3 AA110 ILE A 257 ASP A 263 1 N ILE A 260 O ARG A 281 SHEET 4 AA110 GLN A 214 PRO A 220 1 N ILE A 217 O HIS A 261 SHEET 5 AA110 HIS A 306 TRP A 314 1 O VAL A 309 N ALA A 216 SHEET 6 AA110 ASN A 148 PRO A 161 1 N VAL A 160 O VAL A 312 SHEET 7 AA110 SER A 129 ASN A 138 -1 N VAL A 130 O TYR A 159 SHEET 8 AA110 GLN A 44 LEU A 47 -1 N LEU A 46 O SER A 129 SHEET 9 AA110 VAL A 391 LEU A 394 1 O LEU A 392 N LEU A 45 SHEET 10 AA110 LEU A 400 ASP A 401 -1 O ASP A 401 N ALA A 393 SHEET 1 AA2 2 LEU A 179 ASP A 180 0 SHEET 2 AA2 2 LYS A 183 LEU A 184 -1 O LYS A 183 N ASP A 180 SHEET 1 AA3 2 VAL A 352 ASP A 354 0 SHEET 2 AA3 2 ARG A 359 MET A 361 -1 O ARG A 359 N ASP A 354 SHEET 1 AA410 ALA B 271 ILE B 275 0 SHEET 2 AA410 MET B 278 VAL B 282 -1 O PHE B 280 N LYS B 273 SHEET 3 AA410 ILE B 257 ASP B 263 1 N ILE B 260 O ARG B 281 SHEET 4 AA410 GLN B 214 PRO B 220 1 N ILE B 217 O HIS B 261 SHEET 5 AA410 HIS B 306 TRP B 314 1 O ILE B 311 N THR B 218 SHEET 6 AA410 ASN B 148 PRO B 161 1 N VAL B 160 O VAL B 312 SHEET 7 AA410 SER B 129 ASN B 138 -1 N MET B 136 O ILE B 153 SHEET 8 AA410 GLN B 44 SER B 48 -1 N LEU B 46 O SER B 129 SHEET 9 AA410 VAL B 391 LEU B 394 1 O LEU B 392 N LEU B 45 SHEET 10 AA410 LEU B 400 THR B 402 -1 O ASP B 401 N ALA B 393 SHEET 1 AA5 2 LEU B 179 ASP B 180 0 SHEET 2 AA5 2 LYS B 183 LEU B 184 -1 O LYS B 183 N ASP B 180 SHEET 1 AA6 2 VAL B 352 ASP B 354 0 SHEET 2 AA6 2 ARG B 359 MET B 361 -1 O ARG B 359 N ASP B 354 SHEET 1 AA7 5 THR C 12 GLU C 16 0 SHEET 2 AA7 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA7 5 SER C 65 VAL C 70 1 O LEU C 67 N PHE C 4 SHEET 4 AA7 5 ARG C 42 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA7 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA8 5 THR D 12 GLU D 16 0 SHEET 2 AA8 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AA8 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA8 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA8 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 226 CB GVE C 502 1555 1555 1.84 LINK SG CYS B 226 CB GVE D 101 1555 1555 1.82 LINK C GLY C 75 N GVE C 502 1555 1555 1.35 LINK C GLY D 75 N GVE D 101 1555 1555 1.33 CRYST1 108.957 108.957 209.546 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009178 0.005299 0.000000 0.00000 SCALE2 0.000000 0.010598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004772 0.00000 CONECT 1433 6928 CONECT 4294 6936 CONECT 6282 6926 CONECT 6871 6934 CONECT 6874 6875 6879 CONECT 6875 6874 6876 CONECT 6876 6875 6877 CONECT 6877 6876 6878 6883 CONECT 6878 6877 6879 6881 CONECT 6879 6874 6878 6880 CONECT 6880 6879 CONECT 6881 6878 6882 CONECT 6882 6881 6883 CONECT 6883 6877 6882 6886 CONECT 6884 6887 6893 6899 6907 CONECT 6885 6888 6894 6899 6909 CONECT 6886 6883 6891 6903 CONECT 6887 6884 CONECT 6888 6885 CONECT 6889 6890 6895 6905 CONECT 6890 6889 CONECT 6891 6886 6892 6897 CONECT 6892 6891 CONECT 6893 6884 CONECT 6894 6885 CONECT 6895 6889 6896 6900 CONECT 6896 6895 CONECT 6897 6891 6898 6902 CONECT 6898 6897 CONECT 6899 6884 6885 CONECT 6900 6895 6901 6904 CONECT 6901 6900 CONECT 6902 6897 6903 6906 CONECT 6903 6886 6902 CONECT 6904 6900 6905 6908 CONECT 6905 6889 6904 CONECT 6906 6902 6907 CONECT 6907 6884 6906 CONECT 6908 6904 6909 CONECT 6909 6885 6908 CONECT 6910 6911 CONECT 6911 6910 6912 CONECT 6912 6911 6913 CONECT 6913 6912 6915 CONECT 6914 6915 6916 CONECT 6915 6913 6914 CONECT 6916 6914 6918 CONECT 6917 6918 6919 CONECT 6918 6916 6917 CONECT 6919 6917 6921 CONECT 6920 6921 6922 CONECT 6921 6919 6920 CONECT 6922 6920 6924 CONECT 6923 6924 6925 CONECT 6924 6922 6923 CONECT 6925 6923 CONECT 6926 6282 6927 CONECT 6927 6926 6928 CONECT 6928 1433 6927 6929 CONECT 6929 6928 6930 CONECT 6930 6929 6931 6932 CONECT 6931 6930 6933 CONECT 6932 6930 CONECT 6933 6931 CONECT 6934 6871 6935 CONECT 6935 6934 6936 CONECT 6936 4294 6935 6937 CONECT 6937 6936 6938 CONECT 6938 6937 6939 6940 CONECT 6939 6938 6941 CONECT 6940 6938 CONECT 6941 6939 CONECT 6942 6943 6948 6949 CONECT 6943 6942 6944 CONECT 6944 6943 6945 6946 6954 CONECT 6945 6944 6950 6951 CONECT 6946 6944 6947 CONECT 6947 6946 6952 6953 CONECT 6948 6942 CONECT 6949 6942 CONECT 6950 6945 CONECT 6951 6945 CONECT 6952 6947 CONECT 6953 6947 CONECT 6954 6944 MASTER 383 0 5 34 38 0 0 6 7530 4 85 74 END