data_8DNY # _entry.id 8DNY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DNY pdb_00008dny 10.2210/pdb8dny/pdb WWPDB D_1000266968 ? ? EMDB EMD-27584 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the human Sec61 complex inhibited by decatransin' _pdbx_database_related.db_id EMD-27584 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DNY _pdbx_database_status.recvd_initial_deposition_date 2022-07-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Park, E.' 1 0000-0003-2994-5174 'Itskanov, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 1063 _citation.page_last 1071 _citation.title 'A common mechanism of Sec61 translocon inhibition by small molecules.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-023-01337-y _citation.pdbx_database_id_PubMed 37169959 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Itskanov, S.' 1 ? primary 'Wang, L.' 2 ? primary 'Junne, T.' 3 ? primary 'Sherriff, R.' 4 ? primary 'Xiao, L.' 5 ? primary 'Blanchard, N.' 6 ? primary 'Shi, W.Q.' 7 ? primary 'Forsyth, C.' 8 ? primary 'Hoepfner, D.' 9 ? primary 'Spiess, M.' 10 ? primary 'Park, E.' 11 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8DNY _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein transport protein Sec61 subunit alpha isoform 1' 52202.438 1 ? 'V263L, D264E, K268R, A270T, R271K, Y272V, Y276I, N277G, T278I, L394F, E346D, Q348G, M401I, R402N, H404K, M409I, V410Y, H411R' ? ? 2 polymer man 'Protein transport protein Sec61 subunit gamma' 7752.325 1 ? ? ? ? 3 polymer man 'Protein transport protein Sec61 subunit beta' 9987.456 1 ? ? ? ? 4 polymer syn 'Decatransin peptide inhibitor' 1202.607 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Sec61 alpha-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG ISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP NLMNLIATIFVFAVVIYFQGFRYELPIRSTKVRGQIGIYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL LGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSPRDIAKQFKDQGMV INGKRETSIYRELKKIIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF ; ;MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG ISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP NLMNLIATIFVFAVVIYFQGFRYELPIRSTKVRGQIGIYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL LGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSPRDIAKQFKDQGMV INGKRETSIYRELKKIIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF ; A ? 2 'polypeptide(L)' no no MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG B ? 3 'polypeptide(L)' no no ;MPGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLF IASVFMLHIWGKYTRS ; ;MPGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLF IASVFMLHIWGKYTRS ; C ? 4 'polypeptide(L)' no yes 'A(YCP)(IML)(T2X)(YCP)(HLX)(T3R)(NZC)(YCP)(T3R)' AXIXXXLTXL D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ILE n 1 4 LYS n 1 5 PHE n 1 6 LEU n 1 7 GLU n 1 8 VAL n 1 9 ILE n 1 10 LYS n 1 11 PRO n 1 12 PHE n 1 13 CYS n 1 14 VAL n 1 15 ILE n 1 16 LEU n 1 17 PRO n 1 18 GLU n 1 19 ILE n 1 20 GLN n 1 21 LYS n 1 22 PRO n 1 23 GLU n 1 24 ARG n 1 25 LYS n 1 26 ILE n 1 27 GLN n 1 28 PHE n 1 29 LYS n 1 30 GLU n 1 31 LYS n 1 32 VAL n 1 33 LEU n 1 34 TRP n 1 35 THR n 1 36 ALA n 1 37 ILE n 1 38 THR n 1 39 LEU n 1 40 PHE n 1 41 ILE n 1 42 PHE n 1 43 LEU n 1 44 VAL n 1 45 CYS n 1 46 CYS n 1 47 GLN n 1 48 ILE n 1 49 PRO n 1 50 LEU n 1 51 PHE n 1 52 GLY n 1 53 ILE n 1 54 MET n 1 55 SER n 1 56 SER n 1 57 ASP n 1 58 SER n 1 59 ALA n 1 60 ASP n 1 61 PRO n 1 62 PHE n 1 63 TYR n 1 64 TRP n 1 65 MET n 1 66 ARG n 1 67 VAL n 1 68 ILE n 1 69 LEU n 1 70 ALA n 1 71 SER n 1 72 ASN n 1 73 ARG n 1 74 GLY n 1 75 THR n 1 76 LEU n 1 77 MET n 1 78 GLU n 1 79 LEU n 1 80 GLY n 1 81 ILE n 1 82 SER n 1 83 PRO n 1 84 ILE n 1 85 VAL n 1 86 THR n 1 87 SER n 1 88 GLY n 1 89 LEU n 1 90 ILE n 1 91 MET n 1 92 GLN n 1 93 LEU n 1 94 LEU n 1 95 ALA n 1 96 GLY n 1 97 ALA n 1 98 LYS n 1 99 ILE n 1 100 ILE n 1 101 GLU n 1 102 VAL n 1 103 GLY n 1 104 ASP n 1 105 THR n 1 106 PRO n 1 107 LYS n 1 108 ASP n 1 109 ARG n 1 110 ALA n 1 111 LEU n 1 112 PHE n 1 113 ASN n 1 114 GLY n 1 115 ALA n 1 116 GLN n 1 117 LYS n 1 118 LEU n 1 119 PHE n 1 120 GLY n 1 121 MET n 1 122 ILE n 1 123 ILE n 1 124 THR n 1 125 ILE n 1 126 GLY n 1 127 GLN n 1 128 SER n 1 129 ILE n 1 130 VAL n 1 131 TYR n 1 132 VAL n 1 133 MET n 1 134 THR n 1 135 GLY n 1 136 MET n 1 137 TYR n 1 138 GLY n 1 139 ASP n 1 140 PRO n 1 141 SER n 1 142 GLU n 1 143 MET n 1 144 GLY n 1 145 ALA n 1 146 GLY n 1 147 ILE n 1 148 CYS n 1 149 LEU n 1 150 LEU n 1 151 ILE n 1 152 THR n 1 153 ILE n 1 154 GLN n 1 155 LEU n 1 156 PHE n 1 157 VAL n 1 158 ALA n 1 159 GLY n 1 160 LEU n 1 161 ILE n 1 162 VAL n 1 163 LEU n 1 164 LEU n 1 165 LEU n 1 166 ASP n 1 167 GLU n 1 168 LEU n 1 169 LEU n 1 170 GLN n 1 171 LYS n 1 172 GLY n 1 173 TYR n 1 174 GLY n 1 175 LEU n 1 176 GLY n 1 177 SER n 1 178 GLY n 1 179 ILE n 1 180 SER n 1 181 LEU n 1 182 PHE n 1 183 ILE n 1 184 ALA n 1 185 THR n 1 186 ASN n 1 187 ILE n 1 188 CYS n 1 189 GLU n 1 190 THR n 1 191 ILE n 1 192 VAL n 1 193 TRP n 1 194 LYS n 1 195 ALA n 1 196 PHE n 1 197 SER n 1 198 PRO n 1 199 THR n 1 200 THR n 1 201 VAL n 1 202 ASN n 1 203 THR n 1 204 GLY n 1 205 ARG n 1 206 GLY n 1 207 MET n 1 208 GLU n 1 209 PHE n 1 210 GLU n 1 211 GLY n 1 212 ALA n 1 213 ILE n 1 214 ILE n 1 215 ALA n 1 216 LEU n 1 217 PHE n 1 218 HIS n 1 219 LEU n 1 220 LEU n 1 221 ALA n 1 222 THR n 1 223 ARG n 1 224 THR n 1 225 ASP n 1 226 LYS n 1 227 VAL n 1 228 ARG n 1 229 ALA n 1 230 LEU n 1 231 ARG n 1 232 GLU n 1 233 ALA n 1 234 PHE n 1 235 TYR n 1 236 ARG n 1 237 GLN n 1 238 ASN n 1 239 LEU n 1 240 PRO n 1 241 ASN n 1 242 LEU n 1 243 MET n 1 244 ASN n 1 245 LEU n 1 246 ILE n 1 247 ALA n 1 248 THR n 1 249 ILE n 1 250 PHE n 1 251 VAL n 1 252 PHE n 1 253 ALA n 1 254 VAL n 1 255 VAL n 1 256 ILE n 1 257 TYR n 1 258 PHE n 1 259 GLN n 1 260 GLY n 1 261 PHE n 1 262 ARG n 1 263 TYR n 1 264 GLU n 1 265 LEU n 1 266 PRO n 1 267 ILE n 1 268 ARG n 1 269 SER n 1 270 THR n 1 271 LYS n 1 272 VAL n 1 273 ARG n 1 274 GLY n 1 275 GLN n 1 276 ILE n 1 277 GLY n 1 278 ILE n 1 279 TYR n 1 280 PRO n 1 281 ILE n 1 282 LYS n 1 283 LEU n 1 284 PHE n 1 285 TYR n 1 286 THR n 1 287 SER n 1 288 ASN n 1 289 ILE n 1 290 PRO n 1 291 ILE n 1 292 ILE n 1 293 LEU n 1 294 GLN n 1 295 SER n 1 296 ALA n 1 297 LEU n 1 298 VAL n 1 299 SER n 1 300 ASN n 1 301 LEU n 1 302 TYR n 1 303 VAL n 1 304 ILE n 1 305 SER n 1 306 GLN n 1 307 MET n 1 308 LEU n 1 309 SER n 1 310 ALA n 1 311 ARG n 1 312 PHE n 1 313 SER n 1 314 GLY n 1 315 ASN n 1 316 LEU n 1 317 LEU n 1 318 VAL n 1 319 SER n 1 320 LEU n 1 321 LEU n 1 322 GLY n 1 323 THR n 1 324 TRP n 1 325 SER n 1 326 ASP n 1 327 THR n 1 328 SER n 1 329 SER n 1 330 GLY n 1 331 GLY n 1 332 PRO n 1 333 ALA n 1 334 ARG n 1 335 ALA n 1 336 TYR n 1 337 PRO n 1 338 VAL n 1 339 GLY n 1 340 GLY n 1 341 LEU n 1 342 CYS n 1 343 TYR n 1 344 TYR n 1 345 LEU n 1 346 SER n 1 347 PRO n 1 348 PRO n 1 349 GLU n 1 350 SER n 1 351 PHE n 1 352 GLY n 1 353 SER n 1 354 VAL n 1 355 LEU n 1 356 GLU n 1 357 ASP n 1 358 PRO n 1 359 VAL n 1 360 HIS n 1 361 ALA n 1 362 VAL n 1 363 VAL n 1 364 TYR n 1 365 ILE n 1 366 VAL n 1 367 PHE n 1 368 MET n 1 369 LEU n 1 370 GLY n 1 371 SER n 1 372 CYS n 1 373 ALA n 1 374 PHE n 1 375 PHE n 1 376 SER n 1 377 LYS n 1 378 THR n 1 379 TRP n 1 380 ILE n 1 381 GLU n 1 382 VAL n 1 383 SER n 1 384 GLY n 1 385 SER n 1 386 SER n 1 387 PRO n 1 388 ARG n 1 389 ASP n 1 390 ILE n 1 391 ALA n 1 392 LYS n 1 393 GLN n 1 394 PHE n 1 395 LYS n 1 396 ASP n 1 397 GLN n 1 398 GLY n 1 399 MET n 1 400 VAL n 1 401 ILE n 1 402 ASN n 1 403 GLY n 1 404 LYS n 1 405 ARG n 1 406 GLU n 1 407 THR n 1 408 SER n 1 409 ILE n 1 410 TYR n 1 411 ARG n 1 412 GLU n 1 413 LEU n 1 414 LYS n 1 415 LYS n 1 416 ILE n 1 417 ILE n 1 418 PRO n 1 419 THR n 1 420 ALA n 1 421 ALA n 1 422 ALA n 1 423 PHE n 1 424 GLY n 1 425 GLY n 1 426 LEU n 1 427 CYS n 1 428 ILE n 1 429 GLY n 1 430 ALA n 1 431 LEU n 1 432 SER n 1 433 VAL n 1 434 LEU n 1 435 ALA n 1 436 ASP n 1 437 PHE n 1 438 LEU n 1 439 GLY n 1 440 ALA n 1 441 ILE n 1 442 GLY n 1 443 SER n 1 444 GLY n 1 445 THR n 1 446 GLY n 1 447 ILE n 1 448 LEU n 1 449 LEU n 1 450 ALA n 1 451 VAL n 1 452 THR n 1 453 ILE n 1 454 ILE n 1 455 TYR n 1 456 GLN n 1 457 TYR n 1 458 PHE n 1 459 GLU n 1 460 ILE n 1 461 PHE n 1 462 VAL n 1 463 LYS n 1 464 GLU n 1 465 GLN n 1 466 SER n 1 467 GLU n 1 468 VAL n 1 469 GLY n 1 470 SER n 1 471 MET n 1 472 GLY n 1 473 ALA n 1 474 LEU n 1 475 LEU n 1 476 PHE n 2 1 MET n 2 2 ASP n 2 3 GLN n 2 4 VAL n 2 5 MET n 2 6 GLN n 2 7 PHE n 2 8 VAL n 2 9 GLU n 2 10 PRO n 2 11 SER n 2 12 ARG n 2 13 GLN n 2 14 PHE n 2 15 VAL n 2 16 LYS n 2 17 ASP n 2 18 SER n 2 19 ILE n 2 20 ARG n 2 21 LEU n 2 22 VAL n 2 23 LYS n 2 24 ARG n 2 25 CYS n 2 26 THR n 2 27 LYS n 2 28 PRO n 2 29 ASP n 2 30 ARG n 2 31 LYS n 2 32 GLU n 2 33 PHE n 2 34 GLN n 2 35 LYS n 2 36 ILE n 2 37 ALA n 2 38 MET n 2 39 ALA n 2 40 THR n 2 41 ALA n 2 42 ILE n 2 43 GLY n 2 44 PHE n 2 45 ALA n 2 46 ILE n 2 47 MET n 2 48 GLY n 2 49 PHE n 2 50 ILE n 2 51 GLY n 2 52 PHE n 2 53 PHE n 2 54 VAL n 2 55 LYS n 2 56 LEU n 2 57 ILE n 2 58 HIS n 2 59 ILE n 2 60 PRO n 2 61 ILE n 2 62 ASN n 2 63 ASN n 2 64 ILE n 2 65 ILE n 2 66 VAL n 2 67 GLY n 2 68 GLY n 3 1 MET n 3 2 PRO n 3 3 GLY n 3 4 PRO n 3 5 THR n 3 6 PRO n 3 7 SER n 3 8 GLY n 3 9 THR n 3 10 ASN n 3 11 VAL n 3 12 GLY n 3 13 SER n 3 14 SER n 3 15 GLY n 3 16 ARG n 3 17 SER n 3 18 PRO n 3 19 SER n 3 20 LYS n 3 21 ALA n 3 22 VAL n 3 23 ALA n 3 24 ALA n 3 25 ARG n 3 26 ALA n 3 27 ALA n 3 28 GLY n 3 29 SER n 3 30 THR n 3 31 VAL n 3 32 ARG n 3 33 GLN n 3 34 ARG n 3 35 LYS n 3 36 ASN n 3 37 ALA n 3 38 SER n 3 39 CYS n 3 40 GLY n 3 41 THR n 3 42 ARG n 3 43 SER n 3 44 ALA n 3 45 GLY n 3 46 ARG n 3 47 THR n 3 48 THR n 3 49 SER n 3 50 ALA n 3 51 GLY n 3 52 THR n 3 53 GLY n 3 54 GLY n 3 55 MET n 3 56 TRP n 3 57 ARG n 3 58 PHE n 3 59 TYR n 3 60 THR n 3 61 GLU n 3 62 ASP n 3 63 SER n 3 64 PRO n 3 65 GLY n 3 66 LEU n 3 67 LYS n 3 68 VAL n 3 69 GLY n 3 70 PRO n 3 71 VAL n 3 72 PRO n 3 73 VAL n 3 74 LEU n 3 75 VAL n 3 76 MET n 3 77 SER n 3 78 LEU n 3 79 LEU n 3 80 PHE n 3 81 ILE n 3 82 ALA n 3 83 SER n 3 84 VAL n 3 85 PHE n 3 86 MET n 3 87 LEU n 3 88 HIS n 3 89 ILE n 3 90 TRP n 3 91 GLY n 3 92 LYS n 3 93 TYR n 3 94 THR n 3 95 ARG n 3 96 SER n 4 1 ALA n 4 2 YCP n 4 3 IML n 4 4 T2X n 4 5 YCP n 4 6 HLX n 4 7 T3R n 4 8 NZC n 4 9 YCP n 4 10 T3R n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 476 human ? 'SEC61A1, SEC61A' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? Sf9 ? ? ? ? ? Baculovirus ? ? ? pFastBac ? ? 2 1 sample 'Biological sequence' 1 68 human ? SEC61G ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? Sf9 ? ? ? ? ? Baculovirus ? ? ? pFastBac ? ? 3 1 sample 'Biological sequence' 1 96 human ? SEC61B ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? Sf9 ? ? ? ? ? Baculovirus ? ? ? pFastBac ? ? # _pdbx_entity_src_syn.entity_id 4 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP S61A1_HUMAN P61619 ? 1 ;MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG ISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL LGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF ; 1 2 UNP SC61G_HUMAN P60059 ? 2 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG 1 3 UNP SC61B_HUMAN P60468 ? 3 ;MPGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLF IASVFMLHIWGKYTRS ; 1 4 PDB 8DNY 8DNY ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DNY A 1 ? 476 ? P61619 1 ? 476 ? 1 476 2 2 8DNY B 1 ? 68 ? P60059 1 ? 68 ? 1 68 3 3 8DNY C 1 ? 96 ? P60468 1 ? 96 ? 1 96 4 4 8DNY D 1 ? 10 ? 8DNY 1 ? 10 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8DNY TYR A 263 ? UNP P61619 VAL 263 conflict 263 1 1 8DNY GLU A 264 ? UNP P61619 ASP 264 'engineered mutation' 264 2 1 8DNY ARG A 268 ? UNP P61619 LYS 268 'engineered mutation' 268 3 1 8DNY THR A 270 ? UNP P61619 ALA 270 'engineered mutation' 270 4 1 8DNY LYS A 271 ? UNP P61619 ARG 271 'engineered mutation' 271 5 1 8DNY VAL A 272 ? UNP P61619 TYR 272 'engineered mutation' 272 6 1 8DNY ILE A 276 ? UNP P61619 TYR 276 'engineered mutation' 276 7 1 8DNY GLY A 277 ? UNP P61619 ASN 277 'engineered mutation' 277 8 1 8DNY ILE A 278 ? UNP P61619 THR 278 'engineered mutation' 278 9 1 8DNY PRO A 387 ? UNP P61619 ALA 387 conflict 387 10 1 8DNY ARG A 388 ? UNP P61619 LYS 388 conflict 388 11 1 8DNY ILE A 390 ? UNP P61619 VAL 390 conflict 390 12 1 8DNY PHE A 394 ? UNP P61619 LEU 394 'engineered mutation' 394 13 1 8DNY ASP A 396 ? UNP P61619 GLU 396 conflict 396 14 1 8DNY GLY A 398 ? UNP P61619 GLN 398 conflict 398 15 1 8DNY ILE A 401 ? UNP P61619 MET 401 'engineered mutation' 401 16 1 8DNY ASN A 402 ? UNP P61619 ARG 402 'engineered mutation' 402 17 1 8DNY LYS A 404 ? UNP P61619 HIS 404 'engineered mutation' 404 18 1 8DNY ILE A 409 ? UNP P61619 MET 409 'engineered mutation' 409 19 1 8DNY TYR A 410 ? UNP P61619 VAL 410 'engineered mutation' 410 20 1 8DNY ARG A 411 ? UNP P61619 HIS 411 'engineered mutation' 411 21 1 8DNY LYS A 414 ? UNP P61619 ASN 414 conflict 414 22 1 8DNY LYS A 415 ? UNP P61619 ARG 415 conflict 415 23 1 8DNY ILE A 416 ? UNP P61619 TYR 416 conflict 416 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HLX 'L-peptide linking' . 5-methyl-L-norleucine ? 'C7 H15 N O2' 145.199 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IML 'L-peptide linking' n N-METHYL-ISOLEUCINE ? 'C7 H15 N O2' 145.199 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NZC 'L-peptide linking' n N-methylidene-L-threonine ? 'C5 H11 N O3' 133.146 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 T2X non-polymer . '(2R)-2-hydroxy-5-methylhexanoic acid' ? 'C7 H14 O3' 146.184 T3R 'L-peptide linking' n N,5-dimethyl-L-norleucine ? 'C8 H17 N O2' 159.226 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YCP 'L-peptide linking' . '(2S)-piperidine-2-carboxylic acid' ? 'C6 H11 N O2' 129.157 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DNY _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 41.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DNY _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 4425 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.597 ? 6000 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 14.781 ? 1584 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.041 ? 709 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 731 ? f_plane_restr ? ? # _struct.entry_id 8DNY _struct.title 'Cryo-EM structure of the human Sec61 complex inhibited by decatransin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DNY _struct_keywords.text 'translocon, decatransin, inhibitor, protein translocation, PROTEIN TRANSPORT, PROTEIN TRANSPORT-INHIBITOR complex' _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 5 ? VAL A 14 ? PHE A 5 VAL A 14 1 ? 10 HELX_P HELX_P2 AA2 GLN A 27 ? ILE A 48 ? GLN A 27 ILE A 48 1 ? 22 HELX_P HELX_P3 AA3 ILE A 81 ? ALA A 97 ? ILE A 81 ALA A 97 1 ? 17 HELX_P HELX_P4 AA4 THR A 105 ? THR A 134 ? THR A 105 THR A 134 1 ? 30 HELX_P HELX_P5 AA5 ASP A 139 ? LYS A 171 ? ASP A 139 LYS A 171 1 ? 33 HELX_P HELX_P6 AA6 SER A 177 ? SER A 197 ? SER A 177 SER A 197 1 ? 21 HELX_P HELX_P7 AA7 GLY A 211 ? ARG A 223 ? GLY A 211 ARG A 223 1 ? 13 HELX_P HELX_P8 AA8 LYS A 226 ? ARG A 236 ? LYS A 226 ARG A 236 1 ? 11 HELX_P HELX_P9 AA9 ASN A 241 ? GLY A 260 ? ASN A 241 GLY A 260 1 ? 20 HELX_P HELX_P10 AB1 ASN A 288 ? PHE A 312 ? ASN A 288 PHE A 312 1 ? 25 HELX_P HELX_P11 AB2 ASN A 315 ? GLY A 322 ? ASN A 315 GLY A 322 1 ? 8 HELX_P HELX_P12 AB3 GLY A 340 ? LEU A 345 ? GLY A 340 LEU A 345 1 ? 6 HELX_P HELX_P13 AB4 SER A 350 ? ASP A 357 ? SER A 350 ASP A 357 1 ? 8 HELX_P HELX_P14 AB5 ASP A 357 ? SER A 383 ? ASP A 357 SER A 383 1 ? 27 HELX_P HELX_P15 AB6 SER A 386 ? ASP A 396 ? SER A 386 ASP A 396 1 ? 11 HELX_P HELX_P16 AB7 ARG A 405 ? THR A 407 ? ARG A 405 THR A 407 5 ? 3 HELX_P HELX_P17 AB8 SER A 408 ? GLY A 439 ? SER A 408 GLY A 439 1 ? 32 HELX_P HELX_P18 AB9 GLY A 442 ? VAL A 468 ? GLY A 442 VAL A 468 1 ? 27 HELX_P HELX_P19 AC1 PHE B 7 ? CYS B 25 ? PHE B 7 CYS B 25 1 ? 19 HELX_P HELX_P20 AC2 ASP B 29 ? VAL B 66 ? ASP B 29 VAL B 66 1 ? 38 HELX_P HELX_P21 AC3 GLY C 69 ? SER C 96 ? GLY C 69 SER C 96 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? D ALA 1 C ? ? ? 1_555 D YCP 2 N ? ? D ALA 1 D YCP 2 1_555 ? ? ? ? ? ? ? 1.509 ? ? covale2 covale both ? D ALA 1 N ? ? ? 1_555 D T3R 10 C ? ? D ALA 1 D T3R 10 1_555 ? ? ? ? ? ? ? 1.509 ? ? covale3 covale both ? D YCP 2 C ? ? ? 1_555 D IML 3 N ? ? D YCP 2 D IML 3 1_555 ? ? ? ? ? ? ? 1.548 ? ? covale4 covale both ? D IML 3 C ? ? ? 1_555 D T2X 4 O28 ? ? D IML 3 D T2X 4 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale5 covale both ? D T2X 4 C ? ? ? 1_555 D YCP 5 N ? ? D T2X 4 D YCP 5 1_555 ? ? ? ? ? ? ? 1.514 ? ? covale6 covale both ? D YCP 5 C ? ? ? 1_555 D HLX 6 N ? ? D YCP 5 D HLX 6 1_555 ? ? ? ? ? ? ? 1.516 ? ? covale7 covale both ? D HLX 6 C ? ? ? 1_555 D T3R 7 N ? ? D HLX 6 D T3R 7 1_555 ? ? ? ? ? ? ? 1.517 ? ? covale8 covale both ? D T3R 7 C ? ? ? 1_555 D NZC 8 N ? ? D T3R 7 D NZC 8 1_555 ? ? ? ? ? ? ? 1.525 ? ? covale9 covale both ? D NZC 8 C ? ? ? 1_555 D YCP 9 N ? ? D NZC 8 D YCP 9 1_555 ? ? ? ? ? ? ? 1.497 ? ? covale10 covale both ? D YCP 9 C ? ? ? 1_555 D T3R 10 N ? ? D YCP 9 D T3R 10 1_555 ? ? ? ? ? ? ? 1.520 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 18 ? ILE A 19 ? GLU A 18 ILE A 19 AA1 2 LYS C 67 ? VAL C 68 ? LYS C 67 VAL C 68 AA2 1 GLY A 277 ? LYS A 282 ? GLY A 277 LYS A 282 AA2 2 ARG A 262 ? SER A 269 ? ARG A 262 SER A 269 AA2 3 MET A 399 ? ILE A 401 ? MET A 399 ILE A 401 AA3 1 THR A 323 ? TRP A 324 ? THR A 323 TRP A 324 AA3 2 PRO A 337 ? GLY A 339 ? PRO A 337 GLY A 339 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 18 ? N GLU A 18 O VAL C 68 ? O VAL C 68 AA2 1 2 O ILE A 281 ? O ILE A 281 N TYR A 263 ? N TYR A 263 AA2 2 3 N ARG A 268 ? N ARG A 268 O VAL A 400 ? O VAL A 400 AA3 1 2 N THR A 323 ? N THR A 323 O VAL A 338 ? O VAL A 338 # _atom_sites.entry_id 8DNY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 MET 133 133 133 MET MET A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 PHE 182 182 182 PHE PHE A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 CYS 188 188 188 CYS CYS A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 PHE 196 196 196 PHE PHE A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 HIS 218 218 218 HIS HIS A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 THR 224 224 224 THR THR A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 PHE 234 234 234 PHE PHE A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 ASN 244 244 244 ASN ASN A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 THR 248 248 248 THR THR A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 TYR 257 257 257 TYR TYR A . n A 1 258 PHE 258 258 258 PHE PHE A . n A 1 259 GLN 259 259 259 GLN GLN A . n A 1 260 GLY 260 260 260 GLY GLY A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 TYR 263 263 263 TYR TYR A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 ARG 268 268 268 ARG ARG A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 THR 270 270 270 THR THR A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 VAL 272 272 272 VAL VAL A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 GLN 275 275 275 GLN GLN A . n A 1 276 ILE 276 276 276 ILE ILE A . n A 1 277 GLY 277 277 277 GLY GLY A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 TYR 279 279 279 TYR TYR A . n A 1 280 PRO 280 280 280 PRO PRO A . n A 1 281 ILE 281 281 281 ILE ILE A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 PHE 284 284 284 PHE PHE A . n A 1 285 TYR 285 285 285 TYR TYR A . n A 1 286 THR 286 286 286 THR THR A . n A 1 287 SER 287 287 287 SER SER A . n A 1 288 ASN 288 288 288 ASN ASN A . n A 1 289 ILE 289 289 289 ILE ILE A . n A 1 290 PRO 290 290 290 PRO PRO A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 ILE 292 292 292 ILE ILE A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 GLN 294 294 294 GLN GLN A . n A 1 295 SER 295 295 295 SER SER A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 VAL 298 298 298 VAL VAL A . n A 1 299 SER 299 299 299 SER SER A . n A 1 300 ASN 300 300 300 ASN ASN A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 TYR 302 302 302 TYR TYR A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 ILE 304 304 304 ILE ILE A . n A 1 305 SER 305 305 305 SER SER A . n A 1 306 GLN 306 306 306 GLN GLN A . n A 1 307 MET 307 307 307 MET MET A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 SER 309 309 309 SER SER A . n A 1 310 ALA 310 310 310 ALA ALA A . n A 1 311 ARG 311 311 311 ARG ARG A . n A 1 312 PHE 312 312 312 PHE PHE A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLY 314 314 314 GLY GLY A . n A 1 315 ASN 315 315 315 ASN ASN A . n A 1 316 LEU 316 316 316 LEU LEU A . n A 1 317 LEU 317 317 317 LEU LEU A . n A 1 318 VAL 318 318 318 VAL VAL A . n A 1 319 SER 319 319 319 SER SER A . n A 1 320 LEU 320 320 320 LEU LEU A . n A 1 321 LEU 321 321 321 LEU LEU A . n A 1 322 GLY 322 322 322 GLY GLY A . n A 1 323 THR 323 323 323 THR THR A . n A 1 324 TRP 324 324 324 TRP TRP A . n A 1 325 SER 325 325 325 SER SER A . n A 1 326 ASP 326 326 ? ? ? A . n A 1 327 THR 327 327 ? ? ? A . n A 1 328 SER 328 328 ? ? ? A . n A 1 329 SER 329 329 ? ? ? A . n A 1 330 GLY 330 330 ? ? ? A . n A 1 331 GLY 331 331 ? ? ? A . n A 1 332 PRO 332 332 ? ? ? A . n A 1 333 ALA 333 333 ? ? ? A . n A 1 334 ARG 334 334 334 ARG ARG A . n A 1 335 ALA 335 335 335 ALA ALA A . n A 1 336 TYR 336 336 336 TYR TYR A . n A 1 337 PRO 337 337 337 PRO PRO A . n A 1 338 VAL 338 338 338 VAL VAL A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 GLY 340 340 340 GLY GLY A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 CYS 342 342 342 CYS CYS A . n A 1 343 TYR 343 343 343 TYR TYR A . n A 1 344 TYR 344 344 344 TYR TYR A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 SER 346 346 346 SER SER A . n A 1 347 PRO 347 347 347 PRO PRO A . n A 1 348 PRO 348 348 348 PRO PRO A . n A 1 349 GLU 349 349 349 GLU GLU A . n A 1 350 SER 350 350 350 SER SER A . n A 1 351 PHE 351 351 351 PHE PHE A . n A 1 352 GLY 352 352 352 GLY GLY A . n A 1 353 SER 353 353 353 SER SER A . n A 1 354 VAL 354 354 354 VAL VAL A . n A 1 355 LEU 355 355 355 LEU LEU A . n A 1 356 GLU 356 356 356 GLU GLU A . n A 1 357 ASP 357 357 357 ASP ASP A . n A 1 358 PRO 358 358 358 PRO PRO A . n A 1 359 VAL 359 359 359 VAL VAL A . n A 1 360 HIS 360 360 360 HIS HIS A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 VAL 362 362 362 VAL VAL A . n A 1 363 VAL 363 363 363 VAL VAL A . n A 1 364 TYR 364 364 364 TYR TYR A . n A 1 365 ILE 365 365 365 ILE ILE A . n A 1 366 VAL 366 366 366 VAL VAL A . n A 1 367 PHE 367 367 367 PHE PHE A . n A 1 368 MET 368 368 368 MET MET A . n A 1 369 LEU 369 369 369 LEU LEU A . n A 1 370 GLY 370 370 370 GLY GLY A . n A 1 371 SER 371 371 371 SER SER A . n A 1 372 CYS 372 372 372 CYS CYS A . n A 1 373 ALA 373 373 373 ALA ALA A . n A 1 374 PHE 374 374 374 PHE PHE A . n A 1 375 PHE 375 375 375 PHE PHE A . n A 1 376 SER 376 376 376 SER SER A . n A 1 377 LYS 377 377 377 LYS LYS A . n A 1 378 THR 378 378 378 THR THR A . n A 1 379 TRP 379 379 379 TRP TRP A . n A 1 380 ILE 380 380 380 ILE ILE A . n A 1 381 GLU 381 381 381 GLU GLU A . n A 1 382 VAL 382 382 382 VAL VAL A . n A 1 383 SER 383 383 383 SER SER A . n A 1 384 GLY 384 384 384 GLY GLY A . n A 1 385 SER 385 385 385 SER SER A . n A 1 386 SER 386 386 386 SER SER A . n A 1 387 PRO 387 387 387 PRO PRO A . n A 1 388 ARG 388 388 388 ARG ARG A . n A 1 389 ASP 389 389 389 ASP ASP A . n A 1 390 ILE 390 390 390 ILE ILE A . n A 1 391 ALA 391 391 391 ALA ALA A . n A 1 392 LYS 392 392 392 LYS LYS A . n A 1 393 GLN 393 393 393 GLN GLN A . n A 1 394 PHE 394 394 394 PHE PHE A . n A 1 395 LYS 395 395 395 LYS LYS A . n A 1 396 ASP 396 396 396 ASP ASP A . n A 1 397 GLN 397 397 397 GLN GLN A . n A 1 398 GLY 398 398 398 GLY GLY A . n A 1 399 MET 399 399 399 MET MET A . n A 1 400 VAL 400 400 400 VAL VAL A . n A 1 401 ILE 401 401 401 ILE ILE A . n A 1 402 ASN 402 402 402 ASN ASN A . n A 1 403 GLY 403 403 403 GLY GLY A . n A 1 404 LYS 404 404 404 LYS LYS A . n A 1 405 ARG 405 405 405 ARG ARG A . n A 1 406 GLU 406 406 406 GLU GLU A . n A 1 407 THR 407 407 407 THR THR A . n A 1 408 SER 408 408 408 SER SER A . n A 1 409 ILE 409 409 409 ILE ILE A . n A 1 410 TYR 410 410 410 TYR TYR A . n A 1 411 ARG 411 411 411 ARG ARG A . n A 1 412 GLU 412 412 412 GLU GLU A . n A 1 413 LEU 413 413 413 LEU LEU A . n A 1 414 LYS 414 414 414 LYS LYS A . n A 1 415 LYS 415 415 415 LYS LYS A . n A 1 416 ILE 416 416 416 ILE ILE A . n A 1 417 ILE 417 417 417 ILE ILE A . n A 1 418 PRO 418 418 418 PRO PRO A . n A 1 419 THR 419 419 419 THR THR A . n A 1 420 ALA 420 420 420 ALA ALA A . n A 1 421 ALA 421 421 421 ALA ALA A . n A 1 422 ALA 422 422 422 ALA ALA A . n A 1 423 PHE 423 423 423 PHE PHE A . n A 1 424 GLY 424 424 424 GLY GLY A . n A 1 425 GLY 425 425 425 GLY GLY A . n A 1 426 LEU 426 426 426 LEU LEU A . n A 1 427 CYS 427 427 427 CYS CYS A . n A 1 428 ILE 428 428 428 ILE ILE A . n A 1 429 GLY 429 429 429 GLY GLY A . n A 1 430 ALA 430 430 430 ALA ALA A . n A 1 431 LEU 431 431 431 LEU LEU A . n A 1 432 SER 432 432 432 SER SER A . n A 1 433 VAL 433 433 433 VAL VAL A . n A 1 434 LEU 434 434 434 LEU LEU A . n A 1 435 ALA 435 435 435 ALA ALA A . n A 1 436 ASP 436 436 436 ASP ASP A . n A 1 437 PHE 437 437 437 PHE PHE A . n A 1 438 LEU 438 438 438 LEU LEU A . n A 1 439 GLY 439 439 439 GLY GLY A . n A 1 440 ALA 440 440 440 ALA ALA A . n A 1 441 ILE 441 441 441 ILE ILE A . n A 1 442 GLY 442 442 442 GLY GLY A . n A 1 443 SER 443 443 443 SER SER A . n A 1 444 GLY 444 444 444 GLY GLY A . n A 1 445 THR 445 445 445 THR THR A . n A 1 446 GLY 446 446 446 GLY GLY A . n A 1 447 ILE 447 447 447 ILE ILE A . n A 1 448 LEU 448 448 448 LEU LEU A . n A 1 449 LEU 449 449 449 LEU LEU A . n A 1 450 ALA 450 450 450 ALA ALA A . n A 1 451 VAL 451 451 451 VAL VAL A . n A 1 452 THR 452 452 452 THR THR A . n A 1 453 ILE 453 453 453 ILE ILE A . n A 1 454 ILE 454 454 454 ILE ILE A . n A 1 455 TYR 455 455 455 TYR TYR A . n A 1 456 GLN 456 456 456 GLN GLN A . n A 1 457 TYR 457 457 457 TYR TYR A . n A 1 458 PHE 458 458 458 PHE PHE A . n A 1 459 GLU 459 459 459 GLU GLU A . n A 1 460 ILE 460 460 460 ILE ILE A . n A 1 461 PHE 461 461 461 PHE PHE A . n A 1 462 VAL 462 462 462 VAL VAL A . n A 1 463 LYS 463 463 463 LYS LYS A . n A 1 464 GLU 464 464 464 GLU GLU A . n A 1 465 GLN 465 465 465 GLN GLN A . n A 1 466 SER 466 466 466 SER SER A . n A 1 467 GLU 467 467 467 GLU GLU A . n A 1 468 VAL 468 468 468 VAL VAL A . n A 1 469 GLY 469 469 ? ? ? A . n A 1 470 SER 470 470 ? ? ? A . n A 1 471 MET 471 471 ? ? ? A . n A 1 472 GLY 472 472 ? ? ? A . n A 1 473 ALA 473 473 ? ? ? A . n A 1 474 LEU 474 474 ? ? ? A . n A 1 475 LEU 475 475 ? ? ? A . n A 1 476 PHE 476 476 ? ? ? A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 ASP 2 2 ? ? ? B . n B 2 3 GLN 3 3 ? ? ? B . n B 2 4 VAL 4 4 ? ? ? B . n B 2 5 MET 5 5 ? ? ? B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 PHE 7 7 7 PHE PHE B . n B 2 8 VAL 8 8 8 VAL VAL B . n B 2 9 GLU 9 9 9 GLU GLU B . n B 2 10 PRO 10 10 10 PRO PRO B . n B 2 11 SER 11 11 11 SER SER B . n B 2 12 ARG 12 12 12 ARG ARG B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 PHE 14 14 14 PHE PHE B . n B 2 15 VAL 15 15 15 VAL VAL B . n B 2 16 LYS 16 16 16 LYS LYS B . n B 2 17 ASP 17 17 17 ASP ASP B . n B 2 18 SER 18 18 18 SER SER B . n B 2 19 ILE 19 19 19 ILE ILE B . n B 2 20 ARG 20 20 20 ARG ARG B . n B 2 21 LEU 21 21 21 LEU LEU B . n B 2 22 VAL 22 22 22 VAL VAL B . n B 2 23 LYS 23 23 23 LYS LYS B . n B 2 24 ARG 24 24 24 ARG ARG B . n B 2 25 CYS 25 25 25 CYS CYS B . n B 2 26 THR 26 26 26 THR THR B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 ASP 29 29 29 ASP ASP B . n B 2 30 ARG 30 30 30 ARG ARG B . n B 2 31 LYS 31 31 31 LYS LYS B . n B 2 32 GLU 32 32 32 GLU GLU B . n B 2 33 PHE 33 33 33 PHE PHE B . n B 2 34 GLN 34 34 34 GLN GLN B . n B 2 35 LYS 35 35 35 LYS LYS B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 ALA 37 37 37 ALA ALA B . n B 2 38 MET 38 38 38 MET MET B . n B 2 39 ALA 39 39 39 ALA ALA B . n B 2 40 THR 40 40 40 THR THR B . n B 2 41 ALA 41 41 41 ALA ALA B . n B 2 42 ILE 42 42 42 ILE ILE B . n B 2 43 GLY 43 43 43 GLY GLY B . n B 2 44 PHE 44 44 44 PHE PHE B . n B 2 45 ALA 45 45 45 ALA ALA B . n B 2 46 ILE 46 46 46 ILE ILE B . n B 2 47 MET 47 47 47 MET MET B . n B 2 48 GLY 48 48 48 GLY GLY B . n B 2 49 PHE 49 49 49 PHE PHE B . n B 2 50 ILE 50 50 50 ILE ILE B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 PHE 52 52 52 PHE PHE B . n B 2 53 PHE 53 53 53 PHE PHE B . n B 2 54 VAL 54 54 54 VAL VAL B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 ILE 57 57 57 ILE ILE B . n B 2 58 HIS 58 58 58 HIS HIS B . n B 2 59 ILE 59 59 59 ILE ILE B . n B 2 60 PRO 60 60 60 PRO PRO B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 ASN 62 62 62 ASN ASN B . n B 2 63 ASN 63 63 63 ASN ASN B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 ILE 65 65 65 ILE ILE B . n B 2 66 VAL 66 66 66 VAL VAL B . n B 2 67 GLY 67 67 ? ? ? B . n B 2 68 GLY 68 68 ? ? ? B . n C 3 1 MET 1 1 ? ? ? C . n C 3 2 PRO 2 2 ? ? ? C . n C 3 3 GLY 3 3 ? ? ? C . n C 3 4 PRO 4 4 ? ? ? C . n C 3 5 THR 5 5 ? ? ? C . n C 3 6 PRO 6 6 ? ? ? C . n C 3 7 SER 7 7 ? ? ? C . n C 3 8 GLY 8 8 ? ? ? C . n C 3 9 THR 9 9 ? ? ? C . n C 3 10 ASN 10 10 ? ? ? C . n C 3 11 VAL 11 11 ? ? ? C . n C 3 12 GLY 12 12 ? ? ? C . n C 3 13 SER 13 13 ? ? ? C . n C 3 14 SER 14 14 ? ? ? C . n C 3 15 GLY 15 15 ? ? ? C . n C 3 16 ARG 16 16 ? ? ? C . n C 3 17 SER 17 17 ? ? ? C . n C 3 18 PRO 18 18 ? ? ? C . n C 3 19 SER 19 19 ? ? ? C . n C 3 20 LYS 20 20 ? ? ? C . n C 3 21 ALA 21 21 ? ? ? C . n C 3 22 VAL 22 22 ? ? ? C . n C 3 23 ALA 23 23 ? ? ? C . n C 3 24 ALA 24 24 ? ? ? C . n C 3 25 ARG 25 25 ? ? ? C . n C 3 26 ALA 26 26 ? ? ? C . n C 3 27 ALA 27 27 ? ? ? C . n C 3 28 GLY 28 28 ? ? ? C . n C 3 29 SER 29 29 ? ? ? C . n C 3 30 THR 30 30 ? ? ? C . n C 3 31 VAL 31 31 ? ? ? C . n C 3 32 ARG 32 32 ? ? ? C . n C 3 33 GLN 33 33 ? ? ? C . n C 3 34 ARG 34 34 ? ? ? C . n C 3 35 LYS 35 35 ? ? ? C . n C 3 36 ASN 36 36 ? ? ? C . n C 3 37 ALA 37 37 ? ? ? C . n C 3 38 SER 38 38 ? ? ? C . n C 3 39 CYS 39 39 ? ? ? C . n C 3 40 GLY 40 40 ? ? ? C . n C 3 41 THR 41 41 ? ? ? C . n C 3 42 ARG 42 42 ? ? ? C . n C 3 43 SER 43 43 ? ? ? C . n C 3 44 ALA 44 44 ? ? ? C . n C 3 45 GLY 45 45 ? ? ? C . n C 3 46 ARG 46 46 ? ? ? C . n C 3 47 THR 47 47 ? ? ? C . n C 3 48 THR 48 48 ? ? ? C . n C 3 49 SER 49 49 ? ? ? C . n C 3 50 ALA 50 50 ? ? ? C . n C 3 51 GLY 51 51 ? ? ? C . n C 3 52 THR 52 52 ? ? ? C . n C 3 53 GLY 53 53 ? ? ? C . n C 3 54 GLY 54 54 ? ? ? C . n C 3 55 MET 55 55 ? ? ? C . n C 3 56 TRP 56 56 ? ? ? C . n C 3 57 ARG 57 57 ? ? ? C . n C 3 58 PHE 58 58 ? ? ? C . n C 3 59 TYR 59 59 ? ? ? C . n C 3 60 THR 60 60 ? ? ? C . n C 3 61 GLU 61 61 ? ? ? C . n C 3 62 ASP 62 62 ? ? ? C . n C 3 63 SER 63 63 ? ? ? C . n C 3 64 PRO 64 64 ? ? ? C . n C 3 65 GLY 65 65 65 GLY GLY C . n C 3 66 LEU 66 66 66 LEU LEU C . n C 3 67 LYS 67 67 67 LYS LYS C . n C 3 68 VAL 68 68 68 VAL VAL C . n C 3 69 GLY 69 69 69 GLY GLY C . n C 3 70 PRO 70 70 70 PRO PRO C . n C 3 71 VAL 71 71 71 VAL VAL C . n C 3 72 PRO 72 72 72 PRO PRO C . n C 3 73 VAL 73 73 73 VAL VAL C . n C 3 74 LEU 74 74 74 LEU LEU C . n C 3 75 VAL 75 75 75 VAL VAL C . n C 3 76 MET 76 76 76 MET MET C . n C 3 77 SER 77 77 77 SER SER C . n C 3 78 LEU 78 78 78 LEU LEU C . n C 3 79 LEU 79 79 79 LEU LEU C . n C 3 80 PHE 80 80 80 PHE PHE C . n C 3 81 ILE 81 81 81 ILE ILE C . n C 3 82 ALA 82 82 82 ALA ALA C . n C 3 83 SER 83 83 83 SER SER C . n C 3 84 VAL 84 84 84 VAL VAL C . n C 3 85 PHE 85 85 85 PHE PHE C . n C 3 86 MET 86 86 86 MET MET C . n C 3 87 LEU 87 87 87 LEU LEU C . n C 3 88 HIS 88 88 88 HIS HIS C . n C 3 89 ILE 89 89 89 ILE ILE C . n C 3 90 TRP 90 90 90 TRP TRP C . n C 3 91 GLY 91 91 91 GLY GLY C . n C 3 92 LYS 92 92 92 LYS LYS C . n C 3 93 TYR 93 93 93 TYR TYR C . n C 3 94 THR 94 94 94 THR THR C . n C 3 95 ARG 95 95 95 ARG ARG C . n C 3 96 SER 96 96 96 SER SER C . n D 4 1 ALA 1 1 501 ALA DT1 D . n D 4 2 YCP 2 2 501 YCP DT1 D . n D 4 3 IML 3 3 501 IML DT1 D . n D 4 4 T2X 4 4 501 T2X DT1 D . n D 4 5 YCP 5 5 501 YCP DT1 D . n D 4 6 HLX 6 6 501 HLX DT1 D . n D 4 7 T3R 7 7 501 T3R DT1 D . n D 4 8 NZC 8 8 501 NZC DT1 D . n D 4 9 YCP 9 9 501 YCP DT1 D . n D 4 10 T3R 10 10 501 T3R DT1 D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email eunyong_park@berkeley.edu _pdbx_contact_author.name_first Eunyong _pdbx_contact_author.name_last Park _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2994-5174 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-24 2 'Structure model' 1 1 2023-09-06 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 3 'Structure model' atom_site 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' pdbx_validate_close_contact 9 3 'Structure model' pdbx_validate_rmsd_bond 10 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.label_atom_id' 7 3 'Structure model' '_chem_comp_atom.atom_id' 8 3 'Structure model' '_chem_comp_bond.atom_id_1' 9 3 'Structure model' '_chem_comp_bond.atom_id_2' 10 3 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 11 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8DNY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8DNY _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 8DNY _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.85 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 452774 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'A human-yeast chimeric Sec complex treated with decatransin' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2,3 # _em_imaging.entry_id 8DNY _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 81000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 8DNY _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blot for 4 seconds before plunging' # _em_experiment.entry_id 8DNY _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8DNY _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 300 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 T2X _pdbx_validate_close_contact.auth_seq_id_2 4 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C D ALA 1 ? ? N D YCP 2 ? ? 1.509 1.336 0.173 0.023 Y 2 1 C D YCP 2 ? ? N D IML 3 ? ? 1.548 1.336 0.212 0.023 Y 3 1 C D T2X 4 ? ? N D YCP 5 ? ? 1.514 1.336 0.178 0.023 Y 4 1 C D YCP 5 ? ? N D HLX 6 ? ? 1.516 1.336 0.180 0.023 Y 5 1 C D HLX 6 ? ? N D T3R 7 ? ? 1.517 1.336 0.181 0.023 Y 6 1 C D T3R 7 ? ? N D NZC 8 ? ? 1.525 1.336 0.189 0.023 Y 7 1 C D NZC 8 ? ? N D YCP 9 ? ? 1.497 1.336 0.161 0.023 Y 8 1 C D YCP 9 ? ? N D T3R 10 ? ? 1.520 1.336 0.184 0.023 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 60 ? ? 57.11 70.44 2 1 PHE A 62 ? ? -97.24 36.08 3 1 MET A 65 ? ? -90.76 53.50 4 1 MET A 77 ? ? -90.49 52.60 5 1 GLN A 275 ? ? -94.77 59.36 6 1 ASP A 396 ? ? -88.29 44.83 7 1 GLN A 397 ? ? -141.87 -13.28 8 1 SER A 443 ? ? 73.29 163.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 5 ? CG ? A PHE 5 CG 2 1 Y 1 A PHE 5 ? CD1 ? A PHE 5 CD1 3 1 Y 1 A PHE 5 ? CD2 ? A PHE 5 CD2 4 1 Y 1 A PHE 5 ? CE1 ? A PHE 5 CE1 5 1 Y 1 A PHE 5 ? CE2 ? A PHE 5 CE2 6 1 Y 1 A PHE 5 ? CZ ? A PHE 5 CZ 7 1 Y 1 A GLU 7 ? CG ? A GLU 7 CG 8 1 Y 1 A GLU 7 ? CD ? A GLU 7 CD 9 1 Y 1 A GLU 7 ? OE1 ? A GLU 7 OE1 10 1 Y 1 A GLU 7 ? OE2 ? A GLU 7 OE2 11 1 Y 1 A LYS 10 ? CG ? A LYS 10 CG 12 1 Y 1 A LYS 10 ? CD ? A LYS 10 CD 13 1 Y 1 A LYS 10 ? CE ? A LYS 10 CE 14 1 Y 1 A LYS 10 ? NZ ? A LYS 10 NZ 15 1 Y 1 A PHE 12 ? CG ? A PHE 12 CG 16 1 Y 1 A PHE 12 ? CD1 ? A PHE 12 CD1 17 1 Y 1 A PHE 12 ? CD2 ? A PHE 12 CD2 18 1 Y 1 A PHE 12 ? CE1 ? A PHE 12 CE1 19 1 Y 1 A PHE 12 ? CE2 ? A PHE 12 CE2 20 1 Y 1 A PHE 12 ? CZ ? A PHE 12 CZ 21 1 Y 1 A GLU 23 ? CG ? A GLU 23 CG 22 1 Y 1 A GLU 23 ? CD ? A GLU 23 CD 23 1 Y 1 A GLU 23 ? OE1 ? A GLU 23 OE1 24 1 Y 1 A GLU 23 ? OE2 ? A GLU 23 OE2 25 1 Y 1 A ARG 24 ? CG ? A ARG 24 CG 26 1 Y 1 A ARG 24 ? CD ? A ARG 24 CD 27 1 Y 1 A ARG 24 ? NE ? A ARG 24 NE 28 1 Y 1 A ARG 24 ? CZ ? A ARG 24 CZ 29 1 Y 1 A ARG 24 ? NH1 ? A ARG 24 NH1 30 1 Y 1 A ARG 24 ? NH2 ? A ARG 24 NH2 31 1 Y 1 B GLN 6 ? CG ? B GLN 6 CG 32 1 Y 1 B GLN 6 ? CD ? B GLN 6 CD 33 1 Y 1 B GLN 6 ? OE1 ? B GLN 6 OE1 34 1 Y 1 B GLN 6 ? NE2 ? B GLN 6 NE2 35 1 Y 1 B GLU 9 ? CG ? B GLU 9 CG 36 1 Y 1 B GLU 9 ? CD ? B GLU 9 CD 37 1 Y 1 B GLU 9 ? OE1 ? B GLU 9 OE1 38 1 Y 1 B GLU 9 ? OE2 ? B GLU 9 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A ASP 326 ? A ASP 326 6 1 Y 1 A THR 327 ? A THR 327 7 1 Y 1 A SER 328 ? A SER 328 8 1 Y 1 A SER 329 ? A SER 329 9 1 Y 1 A GLY 330 ? A GLY 330 10 1 Y 1 A GLY 331 ? A GLY 331 11 1 Y 1 A PRO 332 ? A PRO 332 12 1 Y 1 A ALA 333 ? A ALA 333 13 1 Y 1 A GLY 469 ? A GLY 469 14 1 Y 1 A SER 470 ? A SER 470 15 1 Y 1 A MET 471 ? A MET 471 16 1 Y 1 A GLY 472 ? A GLY 472 17 1 Y 1 A ALA 473 ? A ALA 473 18 1 Y 1 A LEU 474 ? A LEU 474 19 1 Y 1 A LEU 475 ? A LEU 475 20 1 Y 1 A PHE 476 ? A PHE 476 21 1 Y 1 B MET 1 ? B MET 1 22 1 Y 1 B ASP 2 ? B ASP 2 23 1 Y 1 B GLN 3 ? B GLN 3 24 1 Y 1 B VAL 4 ? B VAL 4 25 1 Y 1 B MET 5 ? B MET 5 26 1 Y 1 B GLY 67 ? B GLY 67 27 1 Y 1 B GLY 68 ? B GLY 68 28 1 Y 1 C MET 1 ? C MET 1 29 1 Y 1 C PRO 2 ? C PRO 2 30 1 Y 1 C GLY 3 ? C GLY 3 31 1 Y 1 C PRO 4 ? C PRO 4 32 1 Y 1 C THR 5 ? C THR 5 33 1 Y 1 C PRO 6 ? C PRO 6 34 1 Y 1 C SER 7 ? C SER 7 35 1 Y 1 C GLY 8 ? C GLY 8 36 1 Y 1 C THR 9 ? C THR 9 37 1 Y 1 C ASN 10 ? C ASN 10 38 1 Y 1 C VAL 11 ? C VAL 11 39 1 Y 1 C GLY 12 ? C GLY 12 40 1 Y 1 C SER 13 ? C SER 13 41 1 Y 1 C SER 14 ? C SER 14 42 1 Y 1 C GLY 15 ? C GLY 15 43 1 Y 1 C ARG 16 ? C ARG 16 44 1 Y 1 C SER 17 ? C SER 17 45 1 Y 1 C PRO 18 ? C PRO 18 46 1 Y 1 C SER 19 ? C SER 19 47 1 Y 1 C LYS 20 ? C LYS 20 48 1 Y 1 C ALA 21 ? C ALA 21 49 1 Y 1 C VAL 22 ? C VAL 22 50 1 Y 1 C ALA 23 ? C ALA 23 51 1 Y 1 C ALA 24 ? C ALA 24 52 1 Y 1 C ARG 25 ? C ARG 25 53 1 Y 1 C ALA 26 ? C ALA 26 54 1 Y 1 C ALA 27 ? C ALA 27 55 1 Y 1 C GLY 28 ? C GLY 28 56 1 Y 1 C SER 29 ? C SER 29 57 1 Y 1 C THR 30 ? C THR 30 58 1 Y 1 C VAL 31 ? C VAL 31 59 1 Y 1 C ARG 32 ? C ARG 32 60 1 Y 1 C GLN 33 ? C GLN 33 61 1 Y 1 C ARG 34 ? C ARG 34 62 1 Y 1 C LYS 35 ? C LYS 35 63 1 Y 1 C ASN 36 ? C ASN 36 64 1 Y 1 C ALA 37 ? C ALA 37 65 1 Y 1 C SER 38 ? C SER 38 66 1 Y 1 C CYS 39 ? C CYS 39 67 1 Y 1 C GLY 40 ? C GLY 40 68 1 Y 1 C THR 41 ? C THR 41 69 1 Y 1 C ARG 42 ? C ARG 42 70 1 Y 1 C SER 43 ? C SER 43 71 1 Y 1 C ALA 44 ? C ALA 44 72 1 Y 1 C GLY 45 ? C GLY 45 73 1 Y 1 C ARG 46 ? C ARG 46 74 1 Y 1 C THR 47 ? C THR 47 75 1 Y 1 C THR 48 ? C THR 48 76 1 Y 1 C SER 49 ? C SER 49 77 1 Y 1 C ALA 50 ? C ALA 50 78 1 Y 1 C GLY 51 ? C GLY 51 79 1 Y 1 C THR 52 ? C THR 52 80 1 Y 1 C GLY 53 ? C GLY 53 81 1 Y 1 C GLY 54 ? C GLY 54 82 1 Y 1 C MET 55 ? C MET 55 83 1 Y 1 C TRP 56 ? C TRP 56 84 1 Y 1 C ARG 57 ? C ARG 57 85 1 Y 1 C PHE 58 ? C PHE 58 86 1 Y 1 C TYR 59 ? C TYR 59 87 1 Y 1 C THR 60 ? C THR 60 88 1 Y 1 C GLU 61 ? C GLU 61 89 1 Y 1 C ASP 62 ? C ASP 62 90 1 Y 1 C SER 63 ? C SER 63 91 1 Y 1 C PRO 64 ? C PRO 64 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HLX N N N N 158 HLX CA C N S 159 HLX C C N N 160 HLX O O N N 161 HLX CB C N N 162 HLX CG C N N 163 HLX C7 C N N 164 HLX C8 C N N 165 HLX C9 C N N 166 HLX OXT O N N 167 HLX H H N N 168 HLX H2 H N N 169 HLX HA H N N 170 HLX H5 H N N 171 HLX H6 H N N 172 HLX H7 H N N 173 HLX H8 H N N 174 HLX H9 H N N 175 HLX H10 H N N 176 HLX H11 H N N 177 HLX H12 H N N 178 HLX H13 H N N 179 HLX H14 H N N 180 HLX H15 H N N 181 HLX HXT H N N 182 ILE N N N N 183 ILE CA C N S 184 ILE C C N N 185 ILE O O N N 186 ILE CB C N S 187 ILE CG1 C N N 188 ILE CG2 C N N 189 ILE CD1 C N N 190 ILE OXT O N N 191 ILE H H N N 192 ILE H2 H N N 193 ILE HA H N N 194 ILE HB H N N 195 ILE HG12 H N N 196 ILE HG13 H N N 197 ILE HG21 H N N 198 ILE HG22 H N N 199 ILE HG23 H N N 200 ILE HD11 H N N 201 ILE HD12 H N N 202 ILE HD13 H N N 203 ILE HXT H N N 204 IML N N N N 205 IML CA C N S 206 IML C C N N 207 IML O O N N 208 IML OXT O N N 209 IML CB C N S 210 IML CN C N N 211 IML CG2 C N N 212 IML CG1 C N N 213 IML CD1 C N N 214 IML H H N N 215 IML HA H N N 216 IML HXT H N N 217 IML HB H N N 218 IML HN1 H N N 219 IML HN2 H N N 220 IML HN3 H N N 221 IML HG21 H N N 222 IML HG22 H N N 223 IML HG23 H N N 224 IML HG12 H N N 225 IML HG13 H N N 226 IML HD11 H N N 227 IML HD12 H N N 228 IML HD13 H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 NZC N N N N 297 NZC O O N N 298 NZC OG1 O N N 299 NZC C C N N 300 NZC CA C N S 301 NZC CB C N R 302 NZC CG2 C N N 303 NZC C40 C N N 304 NZC OXT O N N 305 NZC HG1 H N N 306 NZC HA H N N 307 NZC HB H N N 308 NZC HG2 H N N 309 NZC HG2A H N N 310 NZC HG2B H N N 311 NZC H40 H N N 312 NZC H40A H N N 313 NZC HXT H N N 314 NZC H40B H N N 315 NZC H H N N 316 PHE N N N N 317 PHE CA C N S 318 PHE C C N N 319 PHE O O N N 320 PHE CB C N N 321 PHE CG C Y N 322 PHE CD1 C Y N 323 PHE CD2 C Y N 324 PHE CE1 C Y N 325 PHE CE2 C Y N 326 PHE CZ C Y N 327 PHE OXT O N N 328 PHE H H N N 329 PHE H2 H N N 330 PHE HA H N N 331 PHE HB2 H N N 332 PHE HB3 H N N 333 PHE HD1 H N N 334 PHE HD2 H N N 335 PHE HE1 H N N 336 PHE HE2 H N N 337 PHE HZ H N N 338 PHE HXT H N N 339 PRO N N N N 340 PRO CA C N S 341 PRO C C N N 342 PRO O O N N 343 PRO CB C N N 344 PRO CG C N N 345 PRO CD C N N 346 PRO OXT O N N 347 PRO H H N N 348 PRO HA H N N 349 PRO HB2 H N N 350 PRO HB3 H N N 351 PRO HG2 H N N 352 PRO HG3 H N N 353 PRO HD2 H N N 354 PRO HD3 H N N 355 PRO HXT H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 T2X CA C N R 371 T2X C30 C N N 372 T2X C31 C N N 373 T2X C32 C N N 374 T2X C33 C N N 375 T2X C34 C N N 376 T2X C C N N 377 T2X O28 O N N 378 T2X O O N N 379 T2X OXT O N N 380 T2X HA H N N 381 T2X H302 H N N 382 T2X H301 H N N 383 T2X H311 H N N 384 T2X H312 H N N 385 T2X H321 H N N 386 T2X H331 H N N 387 T2X H333 H N N 388 T2X H332 H N N 389 T2X H341 H N N 390 T2X H342 H N N 391 T2X H343 H N N 392 T2X H H N N 393 T2X HXT H N N 394 T3R C52 C N N 395 T3R CA C N S 396 T3R C C N N 397 T3R C70 C N N 398 T3R C71 C N N 399 T3R C72 C N N 400 T3R C73 C N N 401 T3R C74 C N N 402 T3R N N N N 403 T3R O O N N 404 T3R H521 H N N 405 T3R H522 H N N 406 T3R H523 H N N 407 T3R HA H N N 408 T3R H702 H N N 409 T3R H701 H N N 410 T3R H711 H N N 411 T3R H712 H N N 412 T3R H721 H N N 413 T3R H733 H N N 414 T3R H731 H N N 415 T3R H732 H N N 416 T3R H743 H N N 417 T3R H741 H N N 418 T3R H742 H N N 419 T3R H H N N 420 T3R OXT O N N 421 T3R HXT H N N 422 THR N N N N 423 THR CA C N S 424 THR C C N N 425 THR O O N N 426 THR CB C N R 427 THR OG1 O N N 428 THR CG2 C N N 429 THR OXT O N N 430 THR H H N N 431 THR H2 H N N 432 THR HA H N N 433 THR HB H N N 434 THR HG1 H N N 435 THR HG21 H N N 436 THR HG22 H N N 437 THR HG23 H N N 438 THR HXT H N N 439 TRP N N N N 440 TRP CA C N S 441 TRP C C N N 442 TRP O O N N 443 TRP CB C N N 444 TRP CG C Y N 445 TRP CD1 C Y N 446 TRP CD2 C Y N 447 TRP NE1 N Y N 448 TRP CE2 C Y N 449 TRP CE3 C Y N 450 TRP CZ2 C Y N 451 TRP CZ3 C Y N 452 TRP CH2 C Y N 453 TRP OXT O N N 454 TRP H H N N 455 TRP H2 H N N 456 TRP HA H N N 457 TRP HB2 H N N 458 TRP HB3 H N N 459 TRP HD1 H N N 460 TRP HE1 H N N 461 TRP HE3 H N N 462 TRP HZ2 H N N 463 TRP HZ3 H N N 464 TRP HH2 H N N 465 TRP HXT H N N 466 TYR N N N N 467 TYR CA C N S 468 TYR C C N N 469 TYR O O N N 470 TYR CB C N N 471 TYR CG C Y N 472 TYR CD1 C Y N 473 TYR CD2 C Y N 474 TYR CE1 C Y N 475 TYR CE2 C Y N 476 TYR CZ C Y N 477 TYR OH O N N 478 TYR OXT O N N 479 TYR H H N N 480 TYR H2 H N N 481 TYR HA H N N 482 TYR HB2 H N N 483 TYR HB3 H N N 484 TYR HD1 H N N 485 TYR HD2 H N N 486 TYR HE1 H N N 487 TYR HE2 H N N 488 TYR HH H N N 489 TYR HXT H N N 490 VAL N N N N 491 VAL CA C N S 492 VAL C C N N 493 VAL O O N N 494 VAL CB C N N 495 VAL CG1 C N N 496 VAL CG2 C N N 497 VAL OXT O N N 498 VAL H H N N 499 VAL H2 H N N 500 VAL HA H N N 501 VAL HB H N N 502 VAL HG11 H N N 503 VAL HG12 H N N 504 VAL HG13 H N N 505 VAL HG21 H N N 506 VAL HG22 H N N 507 VAL HG23 H N N 508 VAL HXT H N N 509 YCP C C N N 510 YCP N N N N 511 YCP O O N N 512 YCP CA C N S 513 YCP CB C N N 514 YCP CD C N N 515 YCP CE C N N 516 YCP CG C N N 517 YCP OXT O N N 518 YCP H H N N 519 YCP HA H N N 520 YCP HB H N N 521 YCP HBA H N N 522 YCP HD H N N 523 YCP HDA H N N 524 YCP HE H N N 525 YCP HEA H N N 526 YCP HG H N N 527 YCP HGA H N N 528 YCP HXT H N N 529 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HLX C O doub N N 150 HLX C CA sing N N 151 HLX CA CB sing N N 152 HLX CA N sing N N 153 HLX CB CG sing N N 154 HLX CG C7 sing N N 155 HLX C7 C9 sing N N 156 HLX C7 C8 sing N N 157 HLX C OXT sing N N 158 HLX N H sing N N 159 HLX N H2 sing N N 160 HLX CA HA sing N N 161 HLX CB H5 sing N N 162 HLX CB H6 sing N N 163 HLX CG H7 sing N N 164 HLX CG H8 sing N N 165 HLX C7 H9 sing N N 166 HLX C8 H10 sing N N 167 HLX C8 H11 sing N N 168 HLX C8 H12 sing N N 169 HLX C9 H13 sing N N 170 HLX C9 H14 sing N N 171 HLX C9 H15 sing N N 172 HLX OXT HXT sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 IML N CA sing N N 195 IML N CN sing N N 196 IML N H sing N N 197 IML CA C sing N N 198 IML CA CB sing N N 199 IML CA HA sing N N 200 IML C O doub N N 201 IML C OXT sing N N 202 IML OXT HXT sing N N 203 IML CB CG2 sing N N 204 IML CB CG1 sing N N 205 IML CB HB sing N N 206 IML CN HN1 sing N N 207 IML CN HN2 sing N N 208 IML CN HN3 sing N N 209 IML CG2 HG21 sing N N 210 IML CG2 HG22 sing N N 211 IML CG2 HG23 sing N N 212 IML CG1 CD1 sing N N 213 IML CG1 HG12 sing N N 214 IML CG1 HG13 sing N N 215 IML CD1 HD11 sing N N 216 IML CD1 HD12 sing N N 217 IML CD1 HD13 sing N N 218 LEU N CA sing N N 219 LEU N H sing N N 220 LEU N H2 sing N N 221 LEU CA C sing N N 222 LEU CA CB sing N N 223 LEU CA HA sing N N 224 LEU C O doub N N 225 LEU C OXT sing N N 226 LEU CB CG sing N N 227 LEU CB HB2 sing N N 228 LEU CB HB3 sing N N 229 LEU CG CD1 sing N N 230 LEU CG CD2 sing N N 231 LEU CG HG sing N N 232 LEU CD1 HD11 sing N N 233 LEU CD1 HD12 sing N N 234 LEU CD1 HD13 sing N N 235 LEU CD2 HD21 sing N N 236 LEU CD2 HD22 sing N N 237 LEU CD2 HD23 sing N N 238 LEU OXT HXT sing N N 239 LYS N CA sing N N 240 LYS N H sing N N 241 LYS N H2 sing N N 242 LYS CA C sing N N 243 LYS CA CB sing N N 244 LYS CA HA sing N N 245 LYS C O doub N N 246 LYS C OXT sing N N 247 LYS CB CG sing N N 248 LYS CB HB2 sing N N 249 LYS CB HB3 sing N N 250 LYS CG CD sing N N 251 LYS CG HG2 sing N N 252 LYS CG HG3 sing N N 253 LYS CD CE sing N N 254 LYS CD HD2 sing N N 255 LYS CD HD3 sing N N 256 LYS CE NZ sing N N 257 LYS CE HE2 sing N N 258 LYS CE HE3 sing N N 259 LYS NZ HZ1 sing N N 260 LYS NZ HZ2 sing N N 261 LYS NZ HZ3 sing N N 262 LYS OXT HXT sing N N 263 MET N CA sing N N 264 MET N H sing N N 265 MET N H2 sing N N 266 MET CA C sing N N 267 MET CA CB sing N N 268 MET CA HA sing N N 269 MET C O doub N N 270 MET C OXT sing N N 271 MET CB CG sing N N 272 MET CB HB2 sing N N 273 MET CB HB3 sing N N 274 MET CG SD sing N N 275 MET CG HG2 sing N N 276 MET CG HG3 sing N N 277 MET SD CE sing N N 278 MET CE HE1 sing N N 279 MET CE HE2 sing N N 280 MET CE HE3 sing N N 281 MET OXT HXT sing N N 282 NZC C40 N sing N N 283 NZC N CA sing N N 284 NZC O C doub N N 285 NZC OG1 CB sing N N 286 NZC OG1 HG1 sing N N 287 NZC CA C sing N N 288 NZC C OXT sing N N 289 NZC CB CA sing N N 290 NZC CA HA sing N N 291 NZC CG2 CB sing N N 292 NZC CB HB sing N N 293 NZC CG2 HG2 sing N N 294 NZC CG2 HG2A sing N N 295 NZC CG2 HG2B sing N N 296 NZC C40 H40 sing N N 297 NZC C40 H40A sing N N 298 NZC C40 H40B sing N N 299 NZC OXT HXT sing N N 300 NZC N H sing N N 301 PHE N CA sing N N 302 PHE N H sing N N 303 PHE N H2 sing N N 304 PHE CA C sing N N 305 PHE CA CB sing N N 306 PHE CA HA sing N N 307 PHE C O doub N N 308 PHE C OXT sing N N 309 PHE CB CG sing N N 310 PHE CB HB2 sing N N 311 PHE CB HB3 sing N N 312 PHE CG CD1 doub Y N 313 PHE CG CD2 sing Y N 314 PHE CD1 CE1 sing Y N 315 PHE CD1 HD1 sing N N 316 PHE CD2 CE2 doub Y N 317 PHE CD2 HD2 sing N N 318 PHE CE1 CZ doub Y N 319 PHE CE1 HE1 sing N N 320 PHE CE2 CZ sing Y N 321 PHE CE2 HE2 sing N N 322 PHE CZ HZ sing N N 323 PHE OXT HXT sing N N 324 PRO N CA sing N N 325 PRO N CD sing N N 326 PRO N H sing N N 327 PRO CA C sing N N 328 PRO CA CB sing N N 329 PRO CA HA sing N N 330 PRO C O doub N N 331 PRO C OXT sing N N 332 PRO CB CG sing N N 333 PRO CB HB2 sing N N 334 PRO CB HB3 sing N N 335 PRO CG CD sing N N 336 PRO CG HG2 sing N N 337 PRO CG HG3 sing N N 338 PRO CD HD2 sing N N 339 PRO CD HD3 sing N N 340 PRO OXT HXT sing N N 341 SER N CA sing N N 342 SER N H sing N N 343 SER N H2 sing N N 344 SER CA C sing N N 345 SER CA CB sing N N 346 SER CA HA sing N N 347 SER C O doub N N 348 SER C OXT sing N N 349 SER CB OG sing N N 350 SER CB HB2 sing N N 351 SER CB HB3 sing N N 352 SER OG HG sing N N 353 SER OXT HXT sing N N 354 T2X C33 C32 sing N N 355 T2X C34 C32 sing N N 356 T2X C32 C31 sing N N 357 T2X C31 C30 sing N N 358 T2X C30 CA sing N N 359 T2X O28 CA sing N N 360 T2X CA C sing N N 361 T2X O C doub N N 362 T2X C OXT sing N N 363 T2X CA HA sing N N 364 T2X C30 H302 sing N N 365 T2X C30 H301 sing N N 366 T2X C31 H311 sing N N 367 T2X C31 H312 sing N N 368 T2X C32 H321 sing N N 369 T2X C33 H331 sing N N 370 T2X C33 H333 sing N N 371 T2X C33 H332 sing N N 372 T2X C34 H341 sing N N 373 T2X C34 H342 sing N N 374 T2X C34 H343 sing N N 375 T2X O28 H sing N N 376 T2X OXT HXT sing N N 377 T3R CA C sing N N 378 T3R CA N sing N N 379 T3R CA C70 sing N N 380 T3R C O doub N N 381 T3R N C52 sing N N 382 T3R C71 C70 sing N N 383 T3R C71 C72 sing N N 384 T3R C72 C74 sing N N 385 T3R C72 C73 sing N N 386 T3R C52 H521 sing N N 387 T3R C52 H522 sing N N 388 T3R C52 H523 sing N N 389 T3R CA HA sing N N 390 T3R C70 H702 sing N N 391 T3R C70 H701 sing N N 392 T3R C71 H711 sing N N 393 T3R C71 H712 sing N N 394 T3R C72 H721 sing N N 395 T3R C73 H733 sing N N 396 T3R C73 H731 sing N N 397 T3R C73 H732 sing N N 398 T3R C74 H743 sing N N 399 T3R C74 H741 sing N N 400 T3R C74 H742 sing N N 401 T3R N H sing N N 402 T3R C OXT sing N N 403 T3R OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TRP N CA sing N N 421 TRP N H sing N N 422 TRP N H2 sing N N 423 TRP CA C sing N N 424 TRP CA CB sing N N 425 TRP CA HA sing N N 426 TRP C O doub N N 427 TRP C OXT sing N N 428 TRP CB CG sing N N 429 TRP CB HB2 sing N N 430 TRP CB HB3 sing N N 431 TRP CG CD1 doub Y N 432 TRP CG CD2 sing Y N 433 TRP CD1 NE1 sing Y N 434 TRP CD1 HD1 sing N N 435 TRP CD2 CE2 doub Y N 436 TRP CD2 CE3 sing Y N 437 TRP NE1 CE2 sing Y N 438 TRP NE1 HE1 sing N N 439 TRP CE2 CZ2 sing Y N 440 TRP CE3 CZ3 doub Y N 441 TRP CE3 HE3 sing N N 442 TRP CZ2 CH2 doub Y N 443 TRP CZ2 HZ2 sing N N 444 TRP CZ3 CH2 sing Y N 445 TRP CZ3 HZ3 sing N N 446 TRP CH2 HH2 sing N N 447 TRP OXT HXT sing N N 448 TYR N CA sing N N 449 TYR N H sing N N 450 TYR N H2 sing N N 451 TYR CA C sing N N 452 TYR CA CB sing N N 453 TYR CA HA sing N N 454 TYR C O doub N N 455 TYR C OXT sing N N 456 TYR CB CG sing N N 457 TYR CB HB2 sing N N 458 TYR CB HB3 sing N N 459 TYR CG CD1 doub Y N 460 TYR CG CD2 sing Y N 461 TYR CD1 CE1 sing Y N 462 TYR CD1 HD1 sing N N 463 TYR CD2 CE2 doub Y N 464 TYR CD2 HD2 sing N N 465 TYR CE1 CZ doub Y N 466 TYR CE1 HE1 sing N N 467 TYR CE2 CZ sing Y N 468 TYR CE2 HE2 sing N N 469 TYR CZ OH sing N N 470 TYR OH HH sing N N 471 TYR OXT HXT sing N N 472 VAL N CA sing N N 473 VAL N H sing N N 474 VAL N H2 sing N N 475 VAL CA C sing N N 476 VAL CA CB sing N N 477 VAL CA HA sing N N 478 VAL C O doub N N 479 VAL C OXT sing N N 480 VAL CB CG1 sing N N 481 VAL CB CG2 sing N N 482 VAL CB HB sing N N 483 VAL CG1 HG11 sing N N 484 VAL CG1 HG12 sing N N 485 VAL CG1 HG13 sing N N 486 VAL CG2 HG21 sing N N 487 VAL CG2 HG22 sing N N 488 VAL CG2 HG23 sing N N 489 VAL OXT HXT sing N N 490 YCP C O doub N N 491 YCP C CA sing N N 492 YCP C OXT sing N N 493 YCP N CA sing N N 494 YCP N CE sing N N 495 YCP CA CB sing N N 496 YCP CB CG sing N N 497 YCP CD CE sing N N 498 YCP CD CG sing N N 499 YCP N H sing N N 500 YCP CA HA sing N N 501 YCP CB HB sing N N 502 YCP CB HBA sing N N 503 YCP CD HD sing N N 504 YCP CD HDA sing N N 505 YCP CE HE sing N N 506 YCP CE HEA sing N N 507 YCP CG HG sing N N 508 YCP CG HGA sing N N 509 YCP OXT HXT sing N N 510 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 25 mM '(HOCH2)3CNH2' 1 Tris 1 100 mM NaCl 2 'sodium chloride' 1 2 mM C4H10O2S2 3 dithiothreitol 1 1 mM C10H16N2O8 4 EDTA 1 3 mM C13H17F13NO4P 5 'Fluorinated Fos-choline-8' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle 'endoplasmic reticulum' _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid pFastBac _em_entity_assembly_recombinant.strain Sf9 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 762984 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Warp 1.0.9 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? Warp 1.0.9 'CTF CORRECTION' ? 5 1 ? ? cryoSPARC 3.3 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? 1 ? Coot 0.9.8 OTHER ? 9 ? ? ? ? ? 'MODEL REFINEMENT' ? 10 ? 1 ? PHENIX 1.19 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 3.3 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC 3.3 CLASSIFICATION ? 13 1 ? ? ? ? RECONSTRUCTION ? 14 1 ? ? cryoSPARC 3.3 'VOLUME SELECTION' ? 15 1 1 1 ? ? 'SERIES ALIGNMENT' ? 16 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 17 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 18 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 19 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 20 1 1 1 ? ? # _em_specimen.concentration 10 _em_specimen.details 'Reconsitituted into a peptidisc. Monodisperse peak from a Superose 6 column.' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'The Vallee Foundation Inc.' 'United States' ? 1 'The Pew Charitable Trusts' 'United States' ? 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 YCP ? ? YCP ? ? 'SUBJECT OF INVESTIGATION' ? 2 T3R ? ? T3R ? ? 'SUBJECT OF INVESTIGATION' ? 3 IML ? ? IML ? ? 'SUBJECT OF INVESTIGATION' ? 4 T2X ? ? T2X ? ? 'SUBJECT OF INVESTIGATION' ? 5 HLX ? ? HLX ? ? 'SUBJECT OF INVESTIGATION' ? 6 NZC ? ? NZC ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'electron microscopy' ? 2 1 'gel filtration' ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #