HEADER IMMUNE SYSTEM/RNA 14-JUL-22 8DP3 TITLE CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 CLOVERLEAF RNA REPLICATION TITLE 2 ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB BL3-6 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB BL3-6 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RNA (90-MER); COMPND 11 CHAIN: R; COMPND 12 FRAGMENT: 5' CLOVERLEAF-LIKE RNA DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 14 ORGANISM_TAXID: 12072 KEYWDS RNA, FAB, ENTEROVIRAL REPLICATION, IMMUNE SYSTEM-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.K.DAS,D.KOIRALA REVDAT 2 25-OCT-23 8DP3 1 REMARK REVDAT 1 19-APR-23 8DP3 0 JRNL AUTH N.K.DAS,N.M.HOLLMANN,J.VOGT,S.E.SEVDALIS,H.A.BANNA,M.OJHA, JRNL AUTH 2 D.KOIRALA JRNL TITL CRYSTAL STRUCTURE OF A HIGHLY CONSERVED ENTEROVIRAL 5' JRNL TITL 2 CLOVERLEAF RNA REPLICATION ELEMENT. JRNL REF NAT COMMUN V. 14 1955 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37029118 JRNL DOI 10.1038/S41467-023-37658-8 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 54086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.6000 0.94 4133 159 0.1484 0.1993 REMARK 3 2 4.6000 - 3.6500 0.94 3980 149 0.1478 0.1935 REMARK 3 3 3.6500 - 3.1900 0.95 4064 154 0.1779 0.2422 REMARK 3 4 3.1900 - 2.9000 0.97 4082 153 0.2097 0.2653 REMARK 3 5 2.9000 - 2.6900 0.99 4181 149 0.2492 0.2947 REMARK 3 6 2.6900 - 2.5300 0.99 4133 170 0.2430 0.2964 REMARK 3 7 2.5300 - 2.4100 0.99 4218 157 0.2496 0.2988 REMARK 3 8 2.4100 - 2.3000 0.99 4160 151 0.2614 0.3480 REMARK 3 9 2.3000 - 2.2200 0.45 1688 70 0.4875 0.5305 REMARK 3 10 2.2000 - 2.1400 0.97 3326 115 0.2984 0.3757 REMARK 3 11 2.1400 - 2.0700 0.96 3999 155 0.2997 0.3446 REMARK 3 12 2.0700 - 2.0100 0.97 4080 157 0.3216 0.3665 REMARK 3 13 2.0100 - 1.9600 0.98 4054 160 0.0000 0.3964 REMARK 3 14 1.9600 - 1.9100 0.48 2020 69 0.6591 0.6827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 11 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3661 3.4203 -8.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.3807 T22: 0.3541 REMARK 3 T33: 0.3400 T12: 0.0155 REMARK 3 T13: 0.0564 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.7748 L22: 0.2524 REMARK 3 L33: 5.5018 L12: 0.8782 REMARK 3 L13: -2.2021 L23: -1.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.1007 S12: 0.3474 S13: 0.1164 REMARK 3 S21: -0.0915 S22: -0.0076 S23: -0.1547 REMARK 3 S31: -0.1054 S32: 0.0082 S33: -0.1103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 31 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8866 7.5703 -30.9991 REMARK 3 T TENSOR REMARK 3 T11: 0.6279 T22: 0.6150 REMARK 3 T33: 0.2844 T12: 0.0808 REMARK 3 T13: 0.0519 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 2.4211 L22: 3.5925 REMARK 3 L33: 4.5468 L12: -0.7024 REMARK 3 L13: -0.9276 L23: 3.9842 REMARK 3 S TENSOR REMARK 3 S11: 0.2481 S12: 0.4672 S13: 0.1385 REMARK 3 S21: -0.7771 S22: 0.1928 S23: -0.2345 REMARK 3 S31: 0.6825 S32: 0.7564 S33: -0.3455 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 41 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4989 -2.0893 -40.4179 REMARK 3 T TENSOR REMARK 3 T11: 0.7491 T22: 0.9170 REMARK 3 T33: 0.4464 T12: -0.0037 REMARK 3 T13: 0.0548 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.4458 L22: 1.4357 REMARK 3 L33: 3.9089 L12: 0.2911 REMARK 3 L13: -0.7087 L23: 1.4315 REMARK 3 S TENSOR REMARK 3 S11: 0.2382 S12: 0.5119 S13: 0.1443 REMARK 3 S21: -0.0294 S22: -0.0620 S23: -0.0543 REMARK 3 S31: -0.4961 S32: -0.0596 S33: -0.1733 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 61 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4115 -6.0674 -48.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.7560 T22: 1.0656 REMARK 3 T33: 0.4585 T12: -0.1083 REMARK 3 T13: 0.0888 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 0.4983 L22: 0.9416 REMARK 3 L33: 8.3681 L12: 0.6056 REMARK 3 L13: -0.2035 L23: -1.9682 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: 0.8622 S13: -0.0846 REMARK 3 S21: -0.1767 S22: 0.2911 S23: -0.2126 REMARK 3 S31: 0.3647 S32: -0.4458 S33: -0.1625 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 81 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8455 -16.1472 -11.0399 REMARK 3 T TENSOR REMARK 3 T11: 0.4834 T22: 0.5356 REMARK 3 T33: 0.4910 T12: -0.0597 REMARK 3 T13: -0.0899 T23: 0.1266 REMARK 3 L TENSOR REMARK 3 L11: 3.0910 L22: 2.0349 REMARK 3 L33: 4.1692 L12: -0.3263 REMARK 3 L13: -0.0152 L23: 1.6659 REMARK 3 S TENSOR REMARK 3 S11: 0.4871 S12: -0.7823 S13: -0.6057 REMARK 3 S21: 0.7850 S22: 0.1039 S23: 0.1714 REMARK 3 S31: 0.4246 S32: -0.1323 S33: -0.4444 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 3 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2723 10.3802 27.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.4526 REMARK 3 T33: 0.2822 T12: -0.1005 REMARK 3 T13: -0.0267 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.5714 L22: 2.0319 REMARK 3 L33: 9.0655 L12: -3.4064 REMARK 3 L13: -2.2909 L23: 5.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.4280 S13: 0.2223 REMARK 3 S21: 0.7289 S22: -0.2269 S23: 0.1811 REMARK 3 S31: -0.1604 S32: 0.4919 S33: 0.3734 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 21 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3302 9.1459 16.4425 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2055 REMARK 3 T33: 0.2275 T12: -0.0553 REMARK 3 T13: -0.0051 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.6595 L22: 3.8966 REMARK 3 L33: 5.2959 L12: -1.2921 REMARK 3 L13: -1.4165 L23: 1.3015 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: -0.1453 S13: -0.0828 REMARK 3 S21: 0.0650 S22: -0.0255 S23: 0.1182 REMARK 3 S31: -0.1893 S32: 0.1144 S33: 0.1070 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 64 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8781 10.3853 17.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.2165 REMARK 3 T33: 0.2403 T12: -0.0259 REMARK 3 T13: 0.0096 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.6185 L22: 1.8548 REMARK 3 L33: 4.1858 L12: 1.0083 REMARK 3 L13: 0.0387 L23: 0.9005 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: -0.1005 S13: 0.1909 REMARK 3 S21: -0.0214 S22: -0.0643 S23: -0.2150 REMARK 3 S31: -0.5078 S32: 0.3104 S33: -0.0558 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 116 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2859 10.3758 46.8885 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.4647 REMARK 3 T33: 0.2920 T12: 0.0790 REMARK 3 T13: -0.0213 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.4073 L22: 2.3367 REMARK 3 L33: 7.2703 L12: 0.0087 REMARK 3 L13: -1.3717 L23: -0.8738 REMARK 3 S TENSOR REMARK 3 S11: 0.1244 S12: -0.3521 S13: 0.0571 REMARK 3 S21: 0.6041 S22: 0.2642 S23: 0.0711 REMARK 3 S31: -0.6841 S32: -0.1782 S33: -0.3857 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 158 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6715 6.6353 45.1345 REMARK 3 T TENSOR REMARK 3 T11: 0.4710 T22: 0.5364 REMARK 3 T33: 0.3212 T12: 0.0242 REMARK 3 T13: 0.0700 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.5086 L22: 5.7124 REMARK 3 L33: 6.2294 L12: 1.1923 REMARK 3 L13: -0.6404 L23: -0.7288 REMARK 3 S TENSOR REMARK 3 S11: -0.2440 S12: -0.2099 S13: -0.2923 REMARK 3 S21: -0.2463 S22: 0.2811 S23: 0.0524 REMARK 3 S31: -0.1098 S32: -0.2078 S33: -0.0347 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 202 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0019 3.7592 52.5275 REMARK 3 T TENSOR REMARK 3 T11: 0.5301 T22: 0.7626 REMARK 3 T33: 0.3134 T12: 0.0064 REMARK 3 T13: -0.0574 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 6.3200 L22: 8.0338 REMARK 3 L33: 5.2269 L12: 2.3174 REMARK 3 L13: -2.3521 L23: -1.2354 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -1.0378 S13: -0.8951 REMARK 3 S21: 0.6854 S22: -0.1117 S23: -0.8458 REMARK 3 S31: 0.0629 S32: 0.3198 S33: -0.1207 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2189 4.0014 15.5674 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.2172 REMARK 3 T33: 0.2611 T12: 0.0271 REMARK 3 T13: -0.0126 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.8016 L22: 1.3187 REMARK 3 L33: 4.3654 L12: 0.3390 REMARK 3 L13: -1.4141 L23: -1.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.0545 S13: 0.1489 REMARK 3 S21: 0.0984 S22: 0.0847 S23: 0.0892 REMARK 3 S31: -0.2006 S32: -0.3695 S33: -0.1220 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 115 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6286 12.9421 50.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.8071 T22: 0.9128 REMARK 3 T33: 0.3722 T12: 0.2992 REMARK 3 T13: 0.0777 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.3554 L22: 2.4103 REMARK 3 L33: 5.9909 L12: 0.6875 REMARK 3 L13: -0.1791 L23: 2.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.7468 S13: 0.2405 REMARK 3 S21: 0.3723 S22: 0.1011 S23: 0.2462 REMARK 3 S31: -1.0904 S32: -0.8198 S33: -0.1092 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4867 -15.9903 -14.6659 REMARK 3 T TENSOR REMARK 3 T11: 0.5334 T22: 0.9067 REMARK 3 T33: 0.7414 T12: -0.1659 REMARK 3 T13: -0.1374 T23: 0.1623 REMARK 3 L TENSOR REMARK 3 L11: 5.8682 L22: 7.8862 REMARK 3 L33: 9.0556 L12: -2.0833 REMARK 3 L13: 4.0922 L23: -1.7362 REMARK 3 S TENSOR REMARK 3 S11: 0.9619 S12: -0.2258 S13: -0.7993 REMARK 3 S21: 0.8387 S22: -1.1609 S23: -1.0713 REMARK 3 S31: 0.6903 S32: 1.4472 S33: 0.2374 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60296 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 66.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6B3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE TETRAHYDRATE (0.01 REMARK 280 M), MES MONOHYDRATE (0.05 M), AMMONIUM SULFATE (2.5 M), PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.08650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.34900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.08650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.34900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H -22 REMARK 465 LYS H -21 REMARK 465 LYS H -20 REMARK 465 ASN H -19 REMARK 465 ILE H -18 REMARK 465 ALA H -17 REMARK 465 PHE H -16 REMARK 465 LEU H -15 REMARK 465 LEU H -14 REMARK 465 ALA H -13 REMARK 465 SER H -12 REMARK 465 MET H -11 REMARK 465 PHE H -10 REMARK 465 VAL H -9 REMARK 465 PHE H -8 REMARK 465 SER H -7 REMARK 465 ILE H -6 REMARK 465 ALA H -5 REMARK 465 THR H -4 REMARK 465 ASN H -3 REMARK 465 ALA H -2 REMARK 465 TYR H -1 REMARK 465 ALA H 0 REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 ASP H 229 REMARK 465 LYS H 230 REMARK 465 THR H 231 REMARK 465 HIS H 232 REMARK 465 THR H 233 REMARK 465 MET L -22 REMARK 465 LYS L -21 REMARK 465 LYS L -20 REMARK 465 ASN L -19 REMARK 465 ILE L -18 REMARK 465 ALA L -17 REMARK 465 PHE L -16 REMARK 465 LEU L -15 REMARK 465 LEU L -14 REMARK 465 ALA L -13 REMARK 465 SER L -12 REMARK 465 MET L -11 REMARK 465 PHE L -10 REMARK 465 VAL L -9 REMARK 465 PHE L -8 REMARK 465 SER L -7 REMARK 465 ILE L -6 REMARK 465 ALA L -5 REMARK 465 THR L -4 REMARK 465 ASN L -3 REMARK 465 ALA L -2 REMARK 465 TYR L -1 REMARK 465 ALA L 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 424 O HOH L 491 1.93 REMARK 500 O HOH L 470 O HOH L 504 1.97 REMARK 500 O HOH H 361 O HOH H 401 1.97 REMARK 500 O HOH H 412 O HOH H 425 2.05 REMARK 500 O HOH L 486 O HOH L 524 2.08 REMARK 500 O HOH H 307 O HOH L 510 2.08 REMARK 500 O HOH R 243 O HOH R 254 2.09 REMARK 500 O HOH R 119 O HOH R 251 2.09 REMARK 500 O HOH H 366 O HOH H 425 2.11 REMARK 500 O HOH L 502 O HOH L 516 2.11 REMARK 500 O HOH H 329 O HOH H 335 2.15 REMARK 500 O HOH H 350 O HOH H 387 2.16 REMARK 500 O HOH H 389 O HOH H 400 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 504 O HOH R 190 4445 1.92 REMARK 500 O HOH L 470 O HOH R 155 4445 1.98 REMARK 500 O HOH L 491 O HOH L 503 4445 2.01 REMARK 500 O HOH L 424 O HOH L 503 4445 2.03 REMARK 500 O HOH L 470 O HOH R 190 4445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A R 22 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 57 -19.36 71.24 REMARK 500 SER H 108 29.67 -142.74 REMARK 500 SER H 144 114.91 -160.51 REMARK 500 ASP H 156 63.06 63.31 REMARK 500 SER L 31 -128.81 49.45 REMARK 500 ALA L 52 -24.61 70.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DP3 H -22 233 PDB 8DP3 8DP3 -22 233 DBREF 8DP3 L -22 215 PDB 8DP3 8DP3 -22 215 DBREF 8DP3 R 1 90 PDB 8DP3 8DP3 1 90 SEQRES 1 H 256 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 H 256 VAL PHE SER ILE ALA THR ASN ALA TYR ALA GLU ILE SER SEQRES 3 H 256 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 4 H 256 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 5 H 256 PHE TYR ILE SER TYR SER SER ILE HIS TRP VAL ARG GLN SEQRES 6 H 256 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 7 H 256 PRO TYR SER GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 8 H 256 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 9 H 256 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 10 H 256 ALA VAL TYR TYR CYS ALA ARG GLN GLY TYR ARG ARG ARG SEQRES 11 H 256 SER GLY ARG GLY PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 12 H 256 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 13 H 256 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 14 H 256 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 15 H 256 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 16 H 256 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 17 H 256 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 18 H 256 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 19 H 256 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 20 H 256 PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 1 L 238 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 L 238 VAL PHE SER ILE ALA THR ASN ALA TYR ALA SER ASP ILE SEQRES 3 L 238 GLN MET THR GLN SER PRO SER SER LEU SER ALA SER VAL SEQRES 4 L 238 GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER GLN SER SEQRES 5 L 238 VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS PRO GLY SEQRES 6 L 238 LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SER LEU SEQRES 7 L 238 TYR SER GLY VAL PRO SER ARG PHE SER GLY SER ARG SER SEQRES 8 L 238 GLY THR ASP PHE THR LEU THR ILE SER SER LEU GLN PRO SEQRES 9 L 238 GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER TYR SER SEQRES 10 L 238 PHE PRO SER THR PHE GLY GLN GLY THR LYS VAL GLU ILE SEQRES 11 L 238 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 12 L 238 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 13 L 238 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 14 L 238 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 15 L 238 SER GLN GLU SER VAL THR GLU GLN ASP SER ALA ASP SER SEQRES 16 L 238 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 17 L 238 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 18 L 238 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 19 L 238 ARG GLY GLU CYS SEQRES 1 R 90 G G U A A A A C A G C C U SEQRES 2 R 90 G U G G G U G A A A C A C SEQRES 3 R 90 A C C C A C A G G G C C C SEQRES 4 R 90 A U U G G G C G C U A G C SEQRES 5 R 90 A C U C U G G U A U C A C SEQRES 6 R 90 C G U A C C U U U G U G C SEQRES 7 R 90 G C C U G U U U U A C C HET PO4 L 301 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *422(H2 O) HELIX 1 AA1 TYR H 31 SER H 35 5 5 HELIX 2 AA2 THR H 77 LYS H 79 5 3 HELIX 3 AA3 ARG H 90 THR H 94 5 5 HELIX 4 AA4 TYR H 104 GLY H 109 1 6 HELIX 5 AA5 SER H 168 ALA H 170 5 3 HELIX 6 AA6 SER H 199 GLY H 202 5 4 HELIX 7 AA7 LYS H 213 ASN H 216 5 4 HELIX 8 AA8 GLN L 80 PHE L 84 5 5 HELIX 9 AA9 SER L 122 GLY L 129 1 8 HELIX 10 AB1 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 GLN H 6 SER H 10 0 SHEET 2 AA1 4 LEU H 21 SER H 28 -1 O ALA H 26 N VAL H 8 SHEET 3 AA1 4 THR H 81 MET H 86 -1 O MET H 86 N LEU H 21 SHEET 4 AA1 4 PHE H 71 ASP H 76 -1 N THR H 72 O GLN H 85 SHEET 1 AA2 6 GLY H 13 VAL H 15 0 SHEET 2 AA2 6 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 AA2 6 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA2 6 SER H 36 GLN H 42 -1 N VAL H 40 O TYR H 98 SHEET 5 AA2 6 LEU H 48 ILE H 54 -1 O GLU H 49 N ARG H 41 SHEET 6 AA2 6 THR H 61 TYR H 63 -1 O TYR H 62 N SER H 53 SHEET 1 AA3 4 GLY H 13 VAL H 15 0 SHEET 2 AA3 4 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 AA3 4 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA3 4 PHE H 112 TRP H 115 -1 O TYR H 114 N ARG H 101 SHEET 1 AA4 4 SER H 132 LEU H 136 0 SHEET 2 AA4 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA4 4 TYR H 188 PRO H 197 -1 O TYR H 188 N TYR H 157 SHEET 4 AA4 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA5 4 THR H 143 SER H 144 0 SHEET 2 AA5 4 THR H 147 TYR H 157 -1 O THR H 147 N SER H 144 SHEET 3 AA5 4 TYR H 188 PRO H 197 -1 O TYR H 188 N TYR H 157 SHEET 4 AA5 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA6 3 THR H 163 TRP H 166 0 SHEET 2 AA6 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AA6 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SHEET 1 AA7 4 MET L 5 SER L 8 0 SHEET 2 AA7 4 VAL L 20 ALA L 26 -1 O THR L 23 N SER L 8 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O PHE L 72 N CYS L 24 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA8 6 SER L 11 SER L 15 0 SHEET 2 AA8 6 THR L 103 LYS L 108 1 O GLU L 106 N LEU L 12 SHEET 3 AA8 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA8 6 VAL L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AA8 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 SER L 11 SER L 15 0 SHEET 2 AA9 4 THR L 103 LYS L 108 1 O GLU L 106 N LEU L 12 SHEET 3 AA9 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O SER L 178 N CYS L 135 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.10 SSBOND 2 CYS H 152 CYS H 208 1555 1555 2.03 SSBOND 3 CYS L 24 CYS L 89 1555 1555 2.10 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.03 CISPEP 1 PHE H 158 PRO H 159 0 -4.26 CISPEP 2 GLU H 160 PRO H 161 0 -3.47 CISPEP 3 SER L 8 PRO L 9 0 -2.58 CISPEP 4 PHE L 95 PRO L 96 0 4.62 CISPEP 5 TYR L 141 PRO L 142 0 2.35 CRYST1 122.173 48.698 144.653 90.00 112.92 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008185 0.000000 0.003460 0.00000 SCALE2 0.000000 0.020535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007506 0.00000