HEADER HYDROLASE 18-JUL-22 8DQB TITLE CRYSTAL STRUCTURE OF 3-DEHYDROQUINATE DEHYDRATASE I FROM KLEBSIELLA TITLE 2 OXYTOCA (I23 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KLOXA.17380.A.B1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 3 ORGANISM_TAXID: 571; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: KLOXA.17380.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 22-NOV-23 8DQB 1 REMARK REVDAT 2 18-OCT-23 8DQB 1 REMARK REVDAT 1 27-JUL-22 8DQB 0 JRNL AUTH L.LIU,S.SEIBOLD,K.P.BATTAILE,S.LOVELL JRNL TITL CRYSTAL STRUCTURE OF 3-DEHYDROQUINATE DEHYDRATASE I FROM JRNL TITL 2 KLEBSIELLA OXYTOCA (I23 FORM) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0300 - 5.2000 0.99 2775 153 0.1687 0.1874 REMARK 3 2 5.2000 - 4.1300 1.00 2720 135 0.1654 0.1887 REMARK 3 3 4.1300 - 3.6100 1.00 2694 162 0.1930 0.2094 REMARK 3 4 3.6100 - 3.2800 1.00 2658 142 0.2138 0.3284 REMARK 3 5 3.2800 - 3.0400 1.00 2715 123 0.2712 0.3034 REMARK 3 6 3.0400 - 2.8600 1.00 2682 126 0.2518 0.3120 REMARK 3 7 2.8600 - 2.7200 1.00 2655 147 0.2596 0.3085 REMARK 3 8 2.7200 - 2.6000 1.00 2661 148 0.2558 0.2842 REMARK 3 9 2.6000 - 2.5000 1.00 2652 156 0.2923 0.3976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6613 -29.4802 -11.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: 0.3470 REMARK 3 T33: 0.4380 T12: -0.0893 REMARK 3 T13: -0.0495 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.6398 L22: 1.5381 REMARK 3 L33: 3.8327 L12: -0.7341 REMARK 3 L13: -0.1898 L23: 1.4342 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: 0.0173 S13: 0.1506 REMARK 3 S21: -0.1106 S22: -0.0739 S23: 0.1942 REMARK 3 S31: 0.0104 S32: -0.2781 S33: -0.0384 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.7481 -20.3168 6.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.3784 REMARK 3 T33: 0.3775 T12: -0.0225 REMARK 3 T13: 0.0136 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4054 L22: 3.7633 REMARK 3 L33: 3.0160 L12: 0.6057 REMARK 3 L13: 0.6273 L23: 3.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0314 S13: 0.0066 REMARK 3 S21: 0.3011 S22: -0.0113 S23: 0.1465 REMARK 3 S31: 0.2457 S32: -0.1045 S33: 0.0488 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5130 -11.8342 14.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.4729 T22: 0.4672 REMARK 3 T33: 0.3899 T12: 0.0004 REMARK 3 T13: -0.0312 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 3.2305 L22: 1.9452 REMARK 3 L33: 1.3125 L12: -0.0883 REMARK 3 L13: 1.0100 L23: 1.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -0.1722 S13: 0.3165 REMARK 3 S21: -0.0555 S22: -0.1552 S23: 0.3511 REMARK 3 S31: -0.1320 S32: -0.5627 S33: 0.2535 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0987 -24.1436 25.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.7193 T22: 0.5777 REMARK 3 T33: 0.3925 T12: -0.2278 REMARK 3 T13: 0.0138 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 7.2524 L22: 3.4688 REMARK 3 L33: 2.9371 L12: -3.2029 REMARK 3 L13: -2.3885 L23: -1.0262 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.2182 S13: -0.1685 REMARK 3 S21: 0.0966 S22: -0.0905 S23: 0.2944 REMARK 3 S31: 0.3640 S32: -0.5580 S33: 0.0723 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.5285 -9.4819 17.6002 REMARK 3 T TENSOR REMARK 3 T11: 0.5546 T22: 0.3490 REMARK 3 T33: 0.3305 T12: 0.0272 REMARK 3 T13: -0.0125 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.0852 L22: 2.5868 REMARK 3 L33: 2.2014 L12: 0.6917 REMARK 3 L13: -0.3355 L23: 0.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0692 S13: -0.1014 REMARK 3 S21: -0.1076 S22: -0.0831 S23: 0.1084 REMARK 3 S31: 0.1426 S32: -0.0945 S33: 0.1185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 116.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2O7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS A2: 20%(V/V) ETHYLENE GLYCOL, REMARK 280 10%(W/V) PEG 8000, 100 MM IMIDAZOLE/MES, PH 6.5, 30 MM MGCL2 AND REMARK 280 30 MM CACL2,KLOXA.17380.A.B1.PW39095 AT 5 MG/ML WITH 2.5 GDP REMARK 280 ADDED, NO ELECTRON DENSITY OBSERVED FOR THE GDP, TRAY: PLATE REMARK 280 12679, WELL A2 DROP 3, PUCK: PSL1405, CRYO: DIRECT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 82.06200 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 82.06200 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 82.06200 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 82.06200 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 82.06200 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 82.06200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 164.12400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 87 REMARK 465 ARG A 88 REMARK 465 THR A 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 86 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 178 69.99 64.68 REMARK 500 PRO A 248 2.01 -65.28 REMARK 500 ASN A 284 -133.26 50.36 REMARK 500 LEU A 344 70.13 -118.79 REMARK 500 ASN A 359 -60.47 -90.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 NE2 REMARK 620 2 HIS A 6 NE2 100.6 REMARK 620 3 ASP A 288 OD2 37.3 70.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 ND1 REMARK 620 2 CYS A 83 SG 87.7 REMARK 620 3 CYS A 92 SG 118.0 136.2 REMARK 620 4 HOH A 514 O 97.5 88.6 119.2 REMARK 620 N 1 2 3 DBREF1 8DQB A 9 375 UNP A0A8F3UXX5_KLEAE DBREF2 8DQB A A0A8F3UXX5 1 367 SEQADV 8DQB MET A 1 UNP A0A8F3UXX INITIATING METHIONINE SEQADV 8DQB ALA A 2 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 3 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 4 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 5 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 6 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 7 UNP A0A8F3UXX EXPRESSION TAG SEQADV 8DQB HIS A 8 UNP A0A8F3UXX EXPRESSION TAG SEQRES 1 A 375 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ASP GLU MET SEQRES 2 A 375 TYR MET ALA ARG ALA LEU LYS LEU ALA ALA ARG GLY ARG SEQRES 3 A 375 PHE THR THR HIS PRO ASN PRO ASN VAL GLY CYS VAL ILE SEQRES 4 A 375 VAL LYS ASP GLY GLU ILE VAL GLY GLU GLY PHE HIS TYR SEQRES 5 A 375 ARG ALA GLY GLU PRO HIS ALA GLU VAL HIS ALA LEU ARG SEQRES 6 A 375 MET ALA GLY ASP LYS ALA LYS GLY ALA THR ALA TYR VAL SEQRES 7 A 375 THR LEU GLU PRO CYS SER HIS HIS GLY ARG THR PRO PRO SEQRES 8 A 375 CYS CYS ASP ALA LEU ILE ALA ALA GLY VAL ALA ARG VAL SEQRES 9 A 375 VAL ALA ALA MET GLN ASP PRO ASN PRO GLN VAL ALA GLY SEQRES 10 A 375 ARG GLY LEU TYR ARG LEU GLN GLN ALA GLY ILE ASP VAL SEQRES 11 A 375 SER HIS GLY LEU MET MET ASN GLU ALA GLU ALA LEU ASN SEQRES 12 A 375 LYS GLY PHE LEU LYS ARG MET ARG THR GLY PHE PRO TRP SEQRES 13 A 375 ILE GLN LEU LYS MET GLY ALA SER LEU ASP GLY ARG THR SEQRES 14 A 375 ALA MET ALA SER GLY GLU SER GLN TRP ILE THR SER PRO SEQRES 15 A 375 GLN ALA ARG ARG ASP VAL GLN ARG LEU ARG ALA GLN SER SEQRES 16 A 375 HIS ALA ILE LEU THR SER SER ALA THR VAL LEU ALA ASP SEQRES 17 A 375 ASP PRO ALA LEU THR VAL ARG TRP GLN GLU LEU SER ALA SEQRES 18 A 375 ASP THR GLN ALA LEU TYR PRO GLN GLU ASN LEU ARG GLN SEQRES 19 A 375 PRO LEU ARG ILE VAL ILE ASP SER GLN ASN ARG VAL THR SEQRES 20 A 375 PRO GLU HIS ARG ILE ILE GLN GLN GLN GLY GLU THR LEU SEQRES 21 A 375 PHE ALA ARG THR HIS ALA ASP GLU ARG ALA TRP PRO ASP SEQRES 22 A 375 ASN VAL ARG THR LEU LEU VAL PRO GLU HIS ASN GLY HIS SEQRES 23 A 375 LEU ASP LEU VAL LEU LEU MET MET GLN LEU GLY LYS GLN SEQRES 24 A 375 GLN VAL ASN SER ILE TRP VAL GLU ALA GLY PRO THR LEU SEQRES 25 A 375 ALA GLY ALA LEU LEU GLN ALA GLY LEU VAL ASP GLU LEU SEQRES 26 A 375 ILE VAL TYR ILE ALA PRO LYS LEU LEU GLY SER ASP ALA SEQRES 27 A 375 ARG GLY LEU CYS ALA LEU PRO GLY LEU GLU LYS LEU SER SEQRES 28 A 375 GLN ALA PRO HIS PHE LYS PHE ASN GLU ILE ARG GLN VAL SEQRES 29 A 375 GLY PRO ASP VAL CYS LEU HIS LEU THR THR ALA HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *31(H2 O) HELIX 1 AA1 HIS A 7 ARG A 24 1 18 HELIX 2 AA2 HIS A 58 GLY A 68 1 11 HELIX 3 AA3 ASP A 69 LYS A 72 5 4 HELIX 4 AA4 PRO A 91 GLY A 100 1 10 HELIX 5 AA5 GLY A 117 ALA A 126 1 10 HELIX 6 AA6 MET A 135 ASN A 143 1 9 HELIX 7 AA7 ASN A 143 GLY A 153 1 11 HELIX 8 AA8 SER A 181 SER A 195 1 15 HELIX 9 AA9 SER A 202 ASP A 209 1 8 HELIX 10 AB1 ARG A 215 LEU A 219 5 5 HELIX 11 AB2 SER A 220 TYR A 227 1 8 HELIX 12 AB3 PRO A 228 LEU A 232 5 5 HELIX 13 AB4 HIS A 250 GLN A 255 5 6 HELIX 14 AB5 ASP A 288 GLN A 299 1 12 HELIX 15 AB6 GLY A 309 ALA A 319 1 11 HELIX 16 AB7 LYS A 349 ALA A 353 5 5 SHEET 1 AA1 5 GLU A 44 PHE A 50 0 SHEET 2 AA1 5 GLY A 36 LYS A 41 -1 N ILE A 39 O GLY A 47 SHEET 3 AA1 5 THR A 75 VAL A 78 -1 O TYR A 77 N VAL A 38 SHEET 4 AA1 5 ARG A 103 ALA A 106 1 O VAL A 105 N ALA A 76 SHEET 5 AA1 5 ASP A 129 HIS A 132 1 O ASP A 129 N VAL A 104 SHEET 1 AA2 9 VAL A 275 LEU A 279 0 SHEET 2 AA2 9 THR A 259 ARG A 263 1 N PHE A 261 O LEU A 278 SHEET 3 AA2 9 LEU A 236 ASP A 241 1 N ARG A 237 O LEU A 260 SHEET 4 AA2 9 ALA A 197 SER A 201 1 N ILE A 198 O ILE A 238 SHEET 5 AA2 9 SER A 303 VAL A 306 1 O TRP A 305 N ALA A 197 SHEET 6 AA2 9 TRP A 156 SER A 164 1 N TRP A 156 O ILE A 304 SHEET 7 AA2 9 GLU A 324 ALA A 330 1 O TYR A 328 N MET A 161 SHEET 8 AA2 9 ASP A 367 THR A 373 -1 O VAL A 368 N ILE A 329 SHEET 9 AA2 9 LYS A 357 VAL A 364 -1 N VAL A 364 O ASP A 367 SHEET 1 AA3 2 GLU A 282 HIS A 283 0 SHEET 2 AA3 2 HIS A 286 LEU A 287 -1 O HIS A 286 N HIS A 283 LINK NE2 HIS A 4 ZN ZN A 402 1555 1555 2.29 LINK NE2 HIS A 6 ZN ZN A 402 1555 1555 2.23 LINK ND1 HIS A 58 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 83 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 92 ZN ZN A 401 1555 1555 2.30 LINK OD2 ASP A 288 ZN ZN A 402 1555 3655 1.90 LINK ZN ZN A 401 O HOH A 514 1555 1555 2.51 CISPEP 1 HIS A 30 PRO A 31 0 3.37 CRYST1 164.124 164.124 164.124 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006093 0.00000