HEADER LIGASE 19-JUL-22 8DQJ TITLE CRYSTAL STRUCTURE OF PYRROLYSYL-TRNA SYNTHETASE FROM TITLE 2 METHANOMETHYLOPHILUS ALVUS ENGINEERED FOR ACRIDONE AMINO ACID (AST) TITLE 3 BOUND TO ATP AND ACRIDONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AA_TRNA_LIGASE_II DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: D, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS METHANOMETHYLOPHILUS ALVUS; SOURCE 3 ORGANISM_TAXID: 1291540; SOURCE 4 GENE: BKD89_05515; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENETIC CODE EXPANSION, METHANOMETHYLOPHILUS ALVUS, PYRROLYSYL-TRNA KEYWDS 2 SYNTHETASE, ACRIDONE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR I.GOTTFRIED-LEE,P.A.KARPLUS,R.A.MEHL,R.B.COOLEY REVDAT 3 25-OCT-23 8DQJ 1 REMARK REVDAT 2 28-DEC-22 8DQJ 1 JRNL REVDAT 1 07-DEC-22 8DQJ 0 JRNL AUTH I.GOTTFRIED-LEE,J.J.PERONA,P.A.KARPLUS,R.A.MEHL,R.B.COOLEY JRNL TITL STRUCTURES OF METHANOMETHYLOPHILUS ALVUS PYRROLYSINE JRNL TITL 2 TRNA-SYNTHETASES SUPPORT THE NEED FOR DE NOVO SELECTIONS JRNL TITL 3 WHEN ALTERING THE SUBSTRATE SPECIFICITY. JRNL REF ACS CHEM.BIOL. V. 17 3470 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 36395426 JRNL DOI 10.1021/ACSCHEMBIO.2C00640 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 101223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1200 - 4.7800 1.00 3269 177 0.1742 0.1739 REMARK 3 2 4.7800 - 3.8000 1.00 3252 164 0.1340 0.1542 REMARK 3 3 3.8000 - 3.3200 1.00 3230 168 0.1538 0.1922 REMARK 3 4 3.3200 - 3.0100 1.00 3220 171 0.1636 0.1812 REMARK 3 5 3.0100 - 2.8000 1.00 3206 175 0.1679 0.1853 REMARK 3 6 2.8000 - 2.6300 1.00 3212 168 0.1715 0.1947 REMARK 3 7 2.6300 - 2.5000 1.00 3204 179 0.1631 0.1839 REMARK 3 8 2.5000 - 2.3900 1.00 3228 158 0.1583 0.2091 REMARK 3 9 2.3900 - 2.3000 1.00 3208 164 0.1569 0.1604 REMARK 3 10 2.3000 - 2.2200 1.00 3212 169 0.1548 0.1777 REMARK 3 11 2.2200 - 2.1500 1.00 3193 170 0.1689 0.2134 REMARK 3 12 2.1500 - 2.0900 1.00 3213 163 0.1717 0.1891 REMARK 3 13 2.0900 - 2.0400 1.00 3221 181 0.1689 0.2003 REMARK 3 14 2.0300 - 1.9900 1.00 3186 168 0.1603 0.1825 REMARK 3 15 1.9900 - 1.9400 1.00 3183 162 0.1667 0.1981 REMARK 3 16 1.9400 - 1.9000 1.00 3213 170 0.1794 0.1920 REMARK 3 17 1.9000 - 1.8600 1.00 3218 159 0.1865 0.2148 REMARK 3 18 1.8600 - 1.8300 1.00 3188 171 0.2014 0.2395 REMARK 3 19 1.8300 - 1.7900 1.00 3204 171 0.2142 0.2712 REMARK 3 20 1.7900 - 1.7600 1.00 3191 173 0.2316 0.2441 REMARK 3 21 1.7600 - 1.7300 1.00 3191 177 0.2321 0.2670 REMARK 3 22 1.7300 - 1.7100 1.00 3217 159 0.2258 0.2380 REMARK 3 23 1.7100 - 1.6800 1.00 3194 171 0.2300 0.2399 REMARK 3 24 1.6800 - 1.6600 1.00 3188 177 0.2443 0.2700 REMARK 3 25 1.6600 - 1.6400 1.00 3177 179 0.2410 0.2613 REMARK 3 26 1.6400 - 1.6200 1.00 3181 158 0.2571 0.2787 REMARK 3 27 1.6200 - 1.6000 1.00 3198 171 0.2719 0.3340 REMARK 3 28 1.6000 - 1.5800 1.00 3208 161 0.3026 0.2902 REMARK 3 29 1.5800 - 1.5600 1.00 3119 187 0.3356 0.3548 REMARK 3 30 1.5600 - 1.5400 1.00 3205 173 0.3600 0.3747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 35.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 2.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JP2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.36100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.36100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.07850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.36100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.36100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.07850 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.36100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.36100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.07850 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 55.36100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.36100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.07850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 0 REMARK 465 SER D 153 REMARK 465 HIS D 154 REMARK 465 SER D 155 REMARK 465 GLY D 156 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 MET A 157 REMARK 465 HIS A 158 REMARK 465 GLN A 200 REMARK 465 GLU A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ASP A 204 REMARK 465 VAL A 205 REMARK 465 TYR A 206 REMARK 465 LYS A 207 REMARK 465 GLU A 208 REMARK 465 HIS A 227 REMARK 465 TYR A 228 REMARK 465 LEU A 229 REMARK 465 ASP A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 HIS A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 38 CE NZ REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 LYS D 50 CD CE NZ REMARK 470 GLU D 100 CG CD OE1 OE2 REMARK 470 ASP D 101 CG OD1 OD2 REMARK 470 LYS D 106 CD CE NZ REMARK 470 GLU D 113 CD OE1 OE2 REMARK 470 LYS D 114 CG CD CE NZ REMARK 470 ARG D 173 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS D 207 CG CD CE NZ REMARK 470 GLU D 208 CG CD OE1 OE2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 LYS A 24 CD CE NZ REMARK 470 LYS A 38 CE NZ REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 MET A 96 CG SD CE REMARK 470 ILE A 98 CG2 CD1 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LEU A 104 CD1 CD2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 130 CD NE CZ NH1 NH2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 THR A 209 OG1 CG2 REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 HIS A 236 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR D 20 70.05 -113.10 REMARK 500 LYS D 207 -66.15 80.24 REMARK 500 ASP A 175 86.17 59.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 218 OE2 REMARK 620 2 SER D 221 OG 78.8 REMARK 620 3 ATP D 301 O1B 95.4 174.0 REMARK 620 4 ATP D 301 O2A 98.7 88.2 94.2 REMARK 620 5 HOH D 450 O 92.3 85.8 93.0 166.2 REMARK 620 6 HOH D 503 O 168.2 89.9 95.8 84.2 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 218 OE1 REMARK 620 2 ATP D 301 O3G 91.3 REMARK 620 3 ATP D 301 O1B 93.3 91.4 REMARK 620 4 HOH D 450 O 75.1 159.0 73.8 REMARK 620 5 HOH D 572 O 93.9 106.5 160.4 90.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP D 301 O1G REMARK 620 2 ATP D 301 O2B 95.7 REMARK 620 3 HOH D 453 O 165.0 94.6 REMARK 620 4 HOH D 529 O 94.5 96.1 73.6 REMARK 620 5 HOH D 545 O 86.2 88.7 104.9 175.0 REMARK 620 6 HOH D 557 O 94.3 169.1 76.4 87.5 87.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DQG RELATED DB: PDB REMARK 900 RELATED ID: 8DQH RELATED DB: PDB REMARK 900 RELATED ID: 8DQI RELATED DB: PDB DBREF1 8DQJ D 2 275 UNP A0A3G3IHP7_9ARCH DBREF2 8DQJ D A0A3G3IHP7 2 275 DBREF1 8DQJ A 2 275 UNP A0A3G3IHP7_9ARCH DBREF2 8DQJ A A0A3G3IHP7 2 275 SEQADV 8DQJ SER D 0 UNP A0A3G3IHP EXPRESSION TAG SEQADV 8DQJ GLY D 1 UNP A0A3G3IHP EXPRESSION TAG SEQADV 8DQJ SER D 166 UNP A0A3G3IHP ASN 166 ENGINEERED MUTATION SEQADV 8DQJ CYS D 168 UNP A0A3G3IHP VAL 168 ENGINEERED MUTATION SEQADV 8DQJ THR D 239 UNP A0A3G3IHP TRP 239 ENGINEERED MUTATION SEQADV 8DQJ SER A 0 UNP A0A3G3IHP EXPRESSION TAG SEQADV 8DQJ GLY A 1 UNP A0A3G3IHP EXPRESSION TAG SEQADV 8DQJ SER A 166 UNP A0A3G3IHP ASN 166 ENGINEERED MUTATION SEQADV 8DQJ CYS A 168 UNP A0A3G3IHP VAL 168 ENGINEERED MUTATION SEQADV 8DQJ THR A 239 UNP A0A3G3IHP TRP 239 ENGINEERED MUTATION SEQRES 1 D 276 SER GLY THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG SEQRES 2 D 276 LEU ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL SEQRES 3 D 276 PHE GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS SEQRES 4 D 276 GLU MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE SEQRES 5 D 276 LYS GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR SEQRES 6 D 276 GLN LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU SEQRES 7 D 276 GLY PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS SEQRES 8 D 276 ASP ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO SEQRES 9 D 276 LEU PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA SEQRES 10 D 276 LEU ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET SEQRES 11 D 276 ARG ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE SEQRES 12 D 276 PHE GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER SEQRES 13 D 276 GLY MET HIS LEU GLU GLU PHE THR MET LEU SER LEU CYS SEQRES 14 D 276 ASP MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS SEQRES 15 D 276 ASN TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO SEQRES 16 D 276 ASP TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS SEQRES 17 D 276 GLU THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SEQRES 18 D 276 SER ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS SEQRES 19 D 276 ASP VAL HIS GLU PRO THR SER GLY ALA GLY PHE GLY LEU SEQRES 20 D 276 GLU ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL SEQRES 21 D 276 LYS LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA SEQRES 22 D 276 LYS ILE ASN SEQRES 1 A 276 SER GLY THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG SEQRES 2 A 276 LEU ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL SEQRES 3 A 276 PHE GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS SEQRES 4 A 276 GLU MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE SEQRES 5 A 276 LYS GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR SEQRES 6 A 276 GLN LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU SEQRES 7 A 276 GLY PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS SEQRES 8 A 276 ASP ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO SEQRES 9 A 276 LEU PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA SEQRES 10 A 276 LEU ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET SEQRES 11 A 276 ARG ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE SEQRES 12 A 276 PHE GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER SEQRES 13 A 276 GLY MET HIS LEU GLU GLU PHE THR MET LEU SER LEU CYS SEQRES 14 A 276 ASP MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS SEQRES 15 A 276 ASN TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO SEQRES 16 A 276 ASP TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS SEQRES 17 A 276 GLU THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SEQRES 18 A 276 SER ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS SEQRES 19 A 276 ASP VAL HIS GLU PRO THR SER GLY ALA GLY PHE GLY LEU SEQRES 20 A 276 GLU ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL SEQRES 21 A 276 LYS LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA SEQRES 22 A 276 LYS ILE ASN HET ATP D 301 42 HET T7Q D 302 34 HET MG D 303 1 HET MG D 304 1 HET MG D 305 1 HET GOL A 301 9 HET AMP A 302 34 HET PEG A 303 17 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM T7Q (2~{S})-2-AZANYL-3-(9-OXIDANYLIDENE-10~{H}-ACRIDIN-2- HETNAM 2 T7Q YL)PROPANOIC ACID HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN T7Q ACRIDONE AMINO ACID (RS1) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 T7Q C16 H15 N2 O3 1+ FORMUL 5 MG 3(MG 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 AMP C10 H14 N5 O7 P FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *374(H2 O) HELIX 1 AA1 THR D 6 GLY D 17 1 12 HELIX 2 AA2 THR D 20 LYS D 24 5 5 HELIX 3 AA3 ASP D 28 ASN D 57 1 30 HELIX 4 AA4 HIS D 61 GLU D 77 1 17 HELIX 5 AA5 LYS D 90 MET D 96 1 7 HELIX 6 AA6 LYS D 102 VAL D 108 5 7 HELIX 7 AA7 LEU D 121 ASP D 134 1 14 HELIX 8 AA8 ASP D 175 ALA D 191 1 17 HELIX 9 AA9 PRO D 226 HIS D 233 1 8 HELIX 10 AB1 LEU D 246 LYS D 255 1 10 HELIX 11 AB2 THR A 6 GLY A 17 1 12 HELIX 12 AB3 ASP A 28 ASN A 57 1 30 HELIX 13 AB4 HIS A 61 GLU A 77 1 17 HELIX 14 AB5 LYS A 90 MET A 96 1 7 HELIX 15 AB6 LYS A 102 VAL A 108 5 7 HELIX 16 AB7 LEU A 121 ASP A 134 1 14 HELIX 17 AB8 ASP A 175 ALA A 191 1 17 HELIX 18 AB9 LEU A 246 LYS A 255 1 10 SHEET 1 AA1 7 ILE D 80 GLU D 81 0 SHEET 2 AA1 7 VAL D 140 PHE D 149 1 O LYS D 141 N ILE D 80 SHEET 3 AA1 7 GLU D 161 MET D 170 -1 O PHE D 162 N CYS D 148 SHEET 4 AA1 7 THR D 239 GLY D 245 -1 O PHE D 244 N LEU D 165 SHEET 5 AA1 7 GLN D 217 VAL D 224 -1 N SER D 221 O GLY D 243 SHEET 6 AA1 7 LYS D 207 ILE D 214 -1 N VAL D 212 O VAL D 219 SHEET 7 AA1 7 ASP D 197 SER D 203 -1 N VAL D 199 O ASP D 211 SHEET 1 AA2 2 PHE D 87 SER D 89 0 SHEET 2 AA2 2 ARG D 115 LEU D 117 -1 O ALA D 116 N ILE D 88 SHEET 1 AA3 2 TYR D 268 LEU D 269 0 SHEET 2 AA3 2 ALA D 272 LYS D 273 -1 O ALA D 272 N LEU D 269 SHEET 1 AA4 7 ILE A 80 GLU A 81 0 SHEET 2 AA4 7 VAL A 140 PHE A 149 1 O LYS A 141 N ILE A 80 SHEET 3 AA4 7 GLU A 161 MET A 170 -1 O PHE A 162 N CYS A 148 SHEET 4 AA4 7 THR A 239 GLY A 245 -1 O PHE A 244 N LEU A 165 SHEET 5 AA4 7 GLN A 217 VAL A 224 -1 N ALA A 223 O GLY A 241 SHEET 6 AA4 7 ILE A 210 ILE A 214 -1 N ILE A 210 O ALA A 222 SHEET 7 AA4 7 ASP A 197 VAL A 199 -1 N VAL A 199 O ASP A 211 SHEET 1 AA5 2 PHE A 87 SER A 89 0 SHEET 2 AA5 2 ARG A 115 LEU A 117 -1 O ALA A 116 N ILE A 88 SHEET 1 AA6 2 TYR A 268 LEU A 269 0 SHEET 2 AA6 2 ALA A 272 LYS A 273 -1 O ALA A 272 N LEU A 269 LINK OE2 GLU D 218 MG MG D 303 1555 1555 2.21 LINK OE1 GLU D 218 MG MG D 305 1555 1555 2.40 LINK OG ASER D 221 MG MG D 303 1555 1555 2.10 LINK O1B ATP D 301 MG MG D 303 1555 1555 1.96 LINK O2A ATP D 301 MG MG D 303 1555 1555 2.10 LINK O1G ATP D 301 MG MG D 304 1555 1555 2.20 LINK O2B ATP D 301 MG MG D 304 1555 1555 2.13 LINK O3G ATP D 301 MG MG D 305 1555 1555 2.35 LINK O1B ATP D 301 MG MG D 305 1555 1555 2.43 LINK MG MG D 303 O HOH D 450 1555 1555 2.17 LINK MG MG D 303 O HOH D 503 1555 1555 2.11 LINK MG MG D 304 O HOH D 453 1555 1555 2.13 LINK MG MG D 304 O HOH D 529 1555 1555 2.07 LINK MG MG D 304 O HOH D 545 1555 1555 2.14 LINK MG MG D 304 O HOH D 557 1555 1555 2.15 LINK MG MG D 305 O HOH D 450 1555 1555 2.56 LINK MG MG D 305 O HOH D 572 1555 1555 2.35 CISPEP 1 GLY D 225 PRO D 226 0 4.14 CRYST1 110.722 110.722 114.157 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008760 0.00000 CONECT 3320 8109 CONECT 3321 8107 CONECT 3362 8107 CONECT 8031 8032 8033 8034 8038 CONECT 8032 8031 8108 CONECT 8033 8031 CONECT 8034 8031 8109 CONECT 8035 8036 8037 8038 8042 CONECT 8036 8035 8107 8109 CONECT 8037 8035 8108 CONECT 8038 8031 8035 CONECT 8039 8040 8041 8042 8043 CONECT 8040 8039 CONECT 8041 8039 8107 CONECT 8042 8035 8039 CONECT 8043 8039 8044 CONECT 8044 8043 8045 8062 8063 CONECT 8045 8044 8046 8047 8064 CONECT 8046 8045 8051 CONECT 8047 8045 8048 8049 8065 CONECT 8048 8047 CONECT 8049 8047 8050 8051 8066 CONECT 8050 8049 8067 CONECT 8051 8046 8049 8052 8068 CONECT 8052 8051 8053 8061 CONECT 8053 8052 8054 8069 CONECT 8054 8053 8055 CONECT 8055 8054 8056 8061 CONECT 8056 8055 8057 8058 CONECT 8057 8056 8070 8071 CONECT 8058 8056 8059 CONECT 8059 8058 8060 8072 CONECT 8060 8059 8061 CONECT 8061 8052 8055 8060 CONECT 8062 8044 CONECT 8063 8044 CONECT 8064 8045 CONECT 8065 8047 CONECT 8066 8049 CONECT 8067 8050 CONECT 8068 8051 CONECT 8069 8053 CONECT 8070 8057 CONECT 8071 8057 CONECT 8072 8059 CONECT 8073 8074 8078 8089 CONECT 8074 8073 8075 8082 CONECT 8075 8074 8076 8094 CONECT 8076 8075 8077 8079 CONECT 8077 8076 8078 8095 CONECT 8078 8073 8077 8096 CONECT 8079 8076 8080 8097 8098 CONECT 8080 8079 8081 8090 8099 CONECT 8081 8080 8092 8093 CONECT 8082 8074 8083 8091 CONECT 8083 8082 8084 8088 CONECT 8084 8083 8085 8100 CONECT 8085 8084 8086 8101 CONECT 8086 8085 8087 8102 CONECT 8087 8086 8088 8103 CONECT 8088 8083 8087 8089 CONECT 8089 8073 8088 8104 CONECT 8090 8080 8105 8106 CONECT 8091 8082 CONECT 8092 8081 CONECT 8093 8081 CONECT 8094 8075 CONECT 8095 8077 CONECT 8096 8078 CONECT 8097 8079 CONECT 8098 8079 CONECT 8099 8080 CONECT 8100 8084 CONECT 8101 8085 CONECT 8102 8086 CONECT 8103 8087 CONECT 8104 8089 CONECT 8105 8090 CONECT 8106 8090 CONECT 8107 3321 3362 8036 8041 CONECT 8107 8219 8272 CONECT 8108 8032 8037 8222 8298 CONECT 8108 8314 8326 CONECT 8109 3320 8034 8036 8219 CONECT 8109 8341 CONECT 8110 8111 8112 CONECT 8111 8110 CONECT 8112 8110 8113 8114 CONECT 8113 8112 CONECT 8114 8112 8115 8116 8117 CONECT 8115 8114 8118 CONECT 8116 8114 CONECT 8117 8114 CONECT 8118 8115 CONECT 8119 8120 8121 8122 8123 CONECT 8120 8119 CONECT 8121 8119 CONECT 8122 8119 CONECT 8123 8119 8124 CONECT 8124 8123 8125 8142 8143 CONECT 8125 8124 8126 8127 8144 CONECT 8126 8125 8131 CONECT 8127 8125 8128 8129 8145 CONECT 8128 8127 CONECT 8129 8127 8130 8131 8146 CONECT 8130 8129 8147 CONECT 8131 8126 8129 8132 8148 CONECT 8132 8131 8133 8141 CONECT 8133 8132 8134 8149 CONECT 8134 8133 8135 CONECT 8135 8134 8136 8141 CONECT 8136 8135 8137 8138 CONECT 8137 8136 8150 8151 CONECT 8138 8136 8139 CONECT 8139 8138 8140 8152 CONECT 8140 8139 8141 CONECT 8141 8132 8135 8140 CONECT 8142 8124 CONECT 8143 8124 CONECT 8144 8125 CONECT 8145 8127 CONECT 8146 8129 CONECT 8147 8130 CONECT 8148 8131 CONECT 8149 8133 CONECT 8150 8137 CONECT 8151 8137 CONECT 8152 8139 CONECT 8153 8154 8155 8160 8161 CONECT 8154 8153 8162 CONECT 8155 8153 8156 8163 8164 CONECT 8156 8155 8157 CONECT 8157 8156 8158 8165 8166 CONECT 8158 8157 8159 8167 8168 CONECT 8159 8158 8169 CONECT 8160 8153 CONECT 8161 8153 CONECT 8162 8154 CONECT 8163 8155 CONECT 8164 8155 CONECT 8165 8157 CONECT 8166 8157 CONECT 8167 8158 CONECT 8168 8158 CONECT 8169 8159 CONECT 8219 8107 8109 CONECT 8222 8108 CONECT 8272 8107 CONECT 8298 8108 CONECT 8314 8108 CONECT 8326 8108 CONECT 8341 8109 MASTER 371 0 8 18 22 0 0 6 4432 2 152 44 END