HEADER HYDROLASE 21-JUL-22 8DRT TITLE PRODUCT STRUCTURE OF SARS-COV-2 MPRO C145A MUTANT IN COMPLEX WITH TITLE 2 NSP6-NSP7 (C6) CUT SITE SEQUENCE (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 3264-3563; COMPND 5 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 6 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 7 EC: 3.4.22.69; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, SARS-COV-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,M.PAETZEL,N.C.J.STRYNADKA REVDAT 2 18-OCT-23 8DRT 1 REMARK REVDAT 1 21-SEP-22 8DRT 0 JRNL AUTH J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,F.GENTILE,A.T.TON, JRNL AUTH 2 M.NG,A.CHERKASOV,N.C.J.STRYNADKA,M.PAETZEL JRNL TITL X-RAY CRYSTALLOGRAPHIC CHARACTERIZATION OF THE SARS-COV-2 JRNL TITL 2 MAIN PROTEASE POLYPROTEIN CLEAVAGE SITES ESSENTIAL FOR VIRAL JRNL TITL 3 PROCESSING AND MATURATION. JRNL REF NAT COMMUN V. 13 5196 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36057636 JRNL DOI 10.1038/S41467-022-32854-4 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 75616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6300 - 4.5000 0.94 2717 130 0.1398 0.1478 REMARK 3 2 4.5000 - 3.5700 0.98 2750 163 0.1234 0.1460 REMARK 3 3 3.5700 - 3.1200 0.99 2770 159 0.1412 0.1716 REMARK 3 4 3.1200 - 2.8300 0.99 2775 158 0.1533 0.1929 REMARK 3 5 2.8300 - 2.6300 0.95 2672 132 0.1700 0.2079 REMARK 3 6 2.6300 - 2.4800 0.95 2690 141 0.1625 0.1993 REMARK 3 7 2.4800 - 2.3500 0.97 2727 135 0.1662 0.1839 REMARK 3 8 2.3500 - 2.2500 0.98 2743 155 0.1641 0.1877 REMARK 3 9 2.2500 - 2.1600 0.97 2733 146 0.1563 0.1926 REMARK 3 10 2.1600 - 2.0900 0.97 2707 148 0.1612 0.1967 REMARK 3 11 2.0900 - 2.0200 0.97 2709 161 0.1663 0.1918 REMARK 3 12 2.0200 - 1.9700 0.97 2754 133 0.1633 0.2049 REMARK 3 13 1.9700 - 1.9100 0.98 2736 140 0.1611 0.1911 REMARK 3 14 1.9100 - 1.8700 0.91 2532 134 0.1712 0.2205 REMARK 3 15 1.8700 - 1.8200 0.95 2714 122 0.1786 0.1607 REMARK 3 16 1.8200 - 1.7900 0.96 2719 132 0.1739 0.2009 REMARK 3 17 1.7900 - 1.7500 0.96 2653 149 0.1705 0.2132 REMARK 3 18 1.7500 - 1.7200 0.97 2721 133 0.1629 0.2049 REMARK 3 19 1.7200 - 1.6900 0.95 2633 157 0.1624 0.2003 REMARK 3 20 1.6900 - 1.6600 0.96 2719 133 0.1637 0.1856 REMARK 3 21 1.6600 - 1.6300 0.95 2651 142 0.1604 0.2110 REMARK 3 22 1.6300 - 1.6100 0.96 2689 138 0.1608 0.1863 REMARK 3 23 1.6100 - 1.5800 0.95 2620 143 0.1666 0.1983 REMARK 3 24 1.5800 - 1.5600 0.94 2672 138 0.1622 0.1901 REMARK 3 25 1.5600 - 1.5400 0.94 2603 120 0.1704 0.2096 REMARK 3 26 1.5400 - 1.5200 0.84 2400 133 0.1795 0.2260 REMARK 3 27 1.5200 - 1.5000 0.74 2009 123 0.1859 0.2494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.133 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4893 REMARK 3 ANGLE : 0.945 6674 REMARK 3 CHIRALITY : 0.061 763 REMARK 3 PLANARITY : 0.006 870 REMARK 3 DIHEDRAL : 13.112 1768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1604 42.9999 2.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0972 REMARK 3 T33: 0.1286 T12: -0.0090 REMARK 3 T13: -0.0086 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.1708 L22: 1.6029 REMARK 3 L33: 2.1087 L12: -0.9122 REMARK 3 L13: -1.0212 L23: 0.3097 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: 0.0457 S13: 0.1044 REMARK 3 S21: -0.1411 S22: -0.0437 S23: -0.2164 REMARK 3 S31: -0.0037 S32: 0.2525 S33: -0.0332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1738 32.4560 1.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.1852 T22: 0.1939 REMARK 3 T33: 0.3204 T12: 0.0504 REMARK 3 T13: 0.0315 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.2387 L22: 2.9963 REMARK 3 L33: 4.9495 L12: -0.1399 REMARK 3 L13: -0.8728 L23: -1.4434 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: -0.1368 S13: -0.3320 REMARK 3 S21: -0.0747 S22: -0.1967 S23: -0.4098 REMARK 3 S31: 0.4045 S32: 0.5923 S33: 0.2898 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1454 46.8217 2.7146 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0631 REMARK 3 T33: 0.1015 T12: -0.0066 REMARK 3 T13: -0.0121 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0418 L22: 1.4152 REMARK 3 L33: 1.2799 L12: -0.1348 REMARK 3 L13: -0.2936 L23: -0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0488 S13: -0.0228 REMARK 3 S21: -0.0282 S22: 0.0400 S23: 0.0528 REMARK 3 S31: 0.0148 S32: -0.0168 S33: -0.0261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7433 57.4639 -2.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.0898 REMARK 3 T33: 0.1688 T12: -0.0225 REMARK 3 T13: -0.0020 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.7422 L22: 1.6385 REMARK 3 L33: 1.0809 L12: -0.1577 REMARK 3 L13: -0.4292 L23: 0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.0598 S13: 0.2944 REMARK 3 S21: -0.0180 S22: -0.0235 S23: -0.2430 REMARK 3 S31: -0.1329 S32: 0.0858 S33: -0.0502 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0944 70.8221 1.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.0638 REMARK 3 T33: 0.1384 T12: 0.0123 REMARK 3 T13: -0.0215 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.4080 L22: 3.2932 REMARK 3 L33: 2.3756 L12: 0.2354 REMARK 3 L13: -0.0991 L23: -1.4148 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0788 S13: 0.0807 REMARK 3 S21: -0.0549 S22: -0.0064 S23: 0.0603 REMARK 3 S31: -0.1005 S32: -0.0132 S33: -0.0072 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0653 62.3904 9.1394 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1095 REMARK 3 T33: 0.1314 T12: 0.0234 REMARK 3 T13: -0.0131 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.6398 L22: 2.3819 REMARK 3 L33: 1.2950 L12: 1.8110 REMARK 3 L13: 0.3234 L23: -0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1816 S13: -0.0206 REMARK 3 S21: 0.1158 S22: -0.0970 S23: -0.0350 REMARK 3 S31: -0.0252 S32: -0.0243 S33: 0.0173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6749 40.5296 21.0636 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.1142 REMARK 3 T33: 0.1088 T12: -0.0115 REMARK 3 T13: -0.0249 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.3184 L22: 0.7373 REMARK 3 L33: 1.4484 L12: 1.1860 REMARK 3 L13: -1.2879 L23: -0.4502 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: 0.1461 S13: 0.0066 REMARK 3 S21: -0.0313 S22: 0.0828 S23: 0.0655 REMARK 3 S31: 0.1069 S32: -0.2100 S33: 0.0100 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6566 39.2088 29.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.3241 REMARK 3 T33: 0.2642 T12: -0.0364 REMARK 3 T13: -0.0136 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.8627 L22: 5.9156 REMARK 3 L33: 1.9509 L12: -2.6679 REMARK 3 L13: -0.9031 L23: -0.1727 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.1239 S13: -0.0253 REMARK 3 S21: -0.0050 S22: 0.1339 S23: 0.4226 REMARK 3 S31: -0.0392 S32: -0.3475 S33: -0.0987 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6999 45.1843 26.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1154 REMARK 3 T33: 0.1234 T12: 0.0016 REMARK 3 T13: -0.0127 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.3793 L22: 1.4496 REMARK 3 L33: 1.2348 L12: 0.5945 REMARK 3 L13: -0.2653 L23: -0.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0050 S13: 0.0284 REMARK 3 S21: 0.0252 S22: 0.0560 S23: 0.0167 REMARK 3 S31: 0.0318 S32: -0.1346 S33: -0.0228 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6213 66.5048 27.4953 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.0818 REMARK 3 T33: 0.1268 T12: -0.0176 REMARK 3 T13: -0.0208 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.6611 L22: 1.3947 REMARK 3 L33: 2.1187 L12: -0.4178 REMARK 3 L13: -0.1150 L23: 0.3240 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.0145 S13: 0.1325 REMARK 3 S21: 0.0456 S22: -0.0076 S23: -0.0242 REMARK 3 S31: -0.2826 S32: 0.0579 S33: 0.0309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79812 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 105.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 45.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 21.52 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: PDB ENTRY 7JOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M AMMONIUM CHLORIDE, REMARK 280 PH 6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.53900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 50 CG CD1 CD2 REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 645 O HOH A 687 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 33 -129.98 52.14 REMARK 500 ASN B 51 81.14 -168.10 REMARK 500 ASN B 84 -120.63 52.09 REMARK 500 ASN B 277 70.59 49.28 REMARK 500 ASP A 33 -127.32 50.31 REMARK 500 ASN A 84 -121.58 53.74 REMARK 500 PRO A 184 49.96 -84.90 REMARK 500 GLN A 189 47.65 -90.40 REMARK 500 ALA A 303 141.67 -170.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 697 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 6.10 ANGSTROMS DBREF 8DRT B 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 DBREF 8DRT A 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 SEQADV 8DRT ALA B 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 8DRT LYS B 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT VAL B 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT ALA B 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT THR B 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT VAL B 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT GLN B 306 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT ALA A 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 8DRT LYS A 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT VAL A 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT ALA A 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT THR A 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT VAL A 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DRT GLN A 306 UNP P0DTD1 EXPRESSION TAG SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS LYS VAL ALA THR VAL GLN SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS LYS VAL ALA THR VAL GLN FORMUL 3 HOH *603(H2 O) HELIX 1 AA1 SER B 10 GLY B 15 1 6 HELIX 2 AA2 HIS B 41 CYS B 44 5 4 HELIX 3 AA3 SER B 46 ASN B 51 5 6 HELIX 4 AA4 ASN B 53 ARG B 60 1 8 HELIX 5 AA5 LYS B 61 HIS B 64 5 4 HELIX 6 AA6 ILE B 200 ASN B 214 1 15 HELIX 7 AA7 THR B 226 TYR B 237 1 12 HELIX 8 AA8 THR B 243 LEU B 250 1 8 HELIX 9 AA9 LEU B 250 GLY B 258 1 9 HELIX 10 AB1 ALA B 260 GLY B 275 1 16 HELIX 11 AB2 THR B 292 LYS B 301 1 10 HELIX 12 AB3 SER A 10 GLY A 15 1 6 HELIX 13 AB4 HIS A 41 CYS A 44 5 4 HELIX 14 AB5 THR A 45 MET A 49 5 5 HELIX 15 AB6 ASN A 53 ARG A 60 1 8 HELIX 16 AB7 SER A 62 HIS A 64 5 3 HELIX 17 AB8 ILE A 200 ASN A 214 1 15 HELIX 18 AB9 THR A 226 TYR A 237 1 12 HELIX 19 AC1 THR A 243 LEU A 250 1 8 HELIX 20 AC2 LEU A 250 GLY A 258 1 9 HELIX 21 AC3 ALA A 260 GLY A 275 1 16 HELIX 22 AC4 THR A 292 LYS A 301 1 10 SHEET 1 AA1 7 VAL B 73 LEU B 75 0 SHEET 2 AA1 7 PHE B 66 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA1 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA1 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA1 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA1 7 VAL B 86 VAL B 91 -1 O LEU B 89 N VAL B 36 SHEET 7 AA1 7 VAL B 77 GLN B 83 -1 N GLN B 83 O VAL B 86 SHEET 1 AA2 5 LYS B 100 PHE B 103 0 SHEET 2 AA2 5 CYS B 156 LEU B 167 1 O VAL B 157 N LYS B 100 SHEET 3 AA2 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA2 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA2 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA3 3 LYS B 100 PHE B 103 0 SHEET 2 AA3 3 CYS B 156 LEU B 167 1 O VAL B 157 N LYS B 100 SHEET 3 AA3 3 VAL B 171 THR B 175 -1 O VAL B 171 N LEU B 167 SHEET 1 AA4 7 VAL A 73 LEU A 75 0 SHEET 2 AA4 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA4 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA4 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA4 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA4 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA4 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA5 5 LYS A 100 PHE A 103 0 SHEET 2 AA5 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA5 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA5 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA5 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA6 3 LYS A 100 PHE A 103 0 SHEET 2 AA6 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA6 3 HIS A 172 THR A 175 -1 O THR A 175 N MET A 162 CRYST1 47.856 105.078 52.290 90.00 104.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020896 0.000000 0.005389 0.00000 SCALE2 0.000000 0.009517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019750 0.00000