HEADER STRUCTURAL PROTEIN 21-JUL-22 8DS8 TITLE CRYSTAL STRUCTURE OF HUMAN TNRC18 BAH DOMAIN IN COMPLEX WITH H3K9ME3 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRINUCLEOTIDE REPEAT-CONTAINING GENE 18 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LONG CAG TRINUCLEOTIDE REPEAT-CONTAINING GENE 79 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3.1; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNRC18, CAGL79, KIAA1856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.K.SONG,J.W.LU REVDAT 4 29-NOV-23 8DS8 1 JRNL REVDAT 3 22-NOV-23 8DS8 1 JRNL REVDAT 2 09-AUG-23 8DS8 1 TITLE JRNL REVDAT 1 02-AUG-23 8DS8 0 JRNL AUTH S.ZHAO,J.LU,B.PAN,H.FAN,S.D.BYRUM,C.XU,A.KIM,Y.GUO, JRNL AUTH 2 K.L.KANCHI,W.GONG,T.SUN,A.J.STOREY,N.T.BURKHOLDER, JRNL AUTH 3 S.G.MACKINTOSH,P.C.KUHLERS,R.D.EDMONDSON,B.D.STRAHL,Y.DIAO, JRNL AUTH 4 A.J.TACKETT,J.R.RAAB,L.CAI,J.SONG,G.G.WANG JRNL TITL TNRC18 ENGAGES H3K9ME3 TO MEDIATE SILENCING OF ENDOGENOUS JRNL TITL 2 RETROTRANSPOSONS. JRNL REF NATURE V. 623 633 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37938770 JRNL DOI 10.1038/S41586-023-06688-Z REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4800 - 4.4300 0.99 2663 154 0.2041 0.2181 REMARK 3 2 4.4300 - 3.5200 1.00 2536 147 0.1601 0.1876 REMARK 3 3 3.5200 - 3.0800 0.99 2503 144 0.1842 0.2132 REMARK 3 4 3.0800 - 2.7900 0.99 2495 144 0.1980 0.2371 REMARK 3 5 2.7900 - 2.5900 0.99 2470 141 0.2069 0.2680 REMARK 3 6 2.5900 - 2.4400 0.99 2473 142 0.2040 0.2364 REMARK 3 7 2.4400 - 2.3200 0.99 2453 142 0.2043 0.2407 REMARK 3 8 2.3200 - 2.2200 0.99 2463 142 0.1992 0.2282 REMARK 3 9 2.2200 - 2.1300 0.99 2439 142 0.2134 0.2744 REMARK 3 10 2.1300 - 2.0600 0.99 2448 141 0.2231 0.2543 REMARK 3 11 2.0600 - 1.9900 0.99 2417 137 0.2535 0.2941 REMARK 3 12 1.9900 - 1.9400 0.99 2421 140 0.2625 0.3345 REMARK 3 13 1.9400 - 1.8900 0.99 2427 139 0.2855 0.3311 REMARK 3 14 1.8900 - 1.8400 0.92 2259 129 0.3489 0.4055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2790 REMARK 3 ANGLE : 0.974 3770 REMARK 3 CHIRALITY : 0.065 394 REMARK 3 PLANARITY : 0.008 471 REMARK 3 DIHEDRAL : 7.446 391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DOV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, PH 6.5, 0.2 M REMARK 280 MAGNESIUM ACETATE, 16-20% PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.90200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.41400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.90200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.41400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2784 REMARK 465 GLN A 2873 REMARK 465 GLY A 2874 REMARK 465 GLN A 2875 REMARK 465 HIS A 2876 REMARK 465 TRP A 2877 REMARK 465 ASP A 2878 REMARK 465 GLN A 2879 REMARK 465 LYS A 2880 REMARK 465 SER A 2881 REMARK 465 SER A 2882 REMARK 465 ARG A 2883 REMARK 465 SER A 2884 REMARK 465 LEU A 2885 REMARK 465 PRO A 2886 REMARK 465 ALA A 2887 REMARK 465 ALA A 2888 REMARK 465 LEU A 2967 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 THR C 3 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 ALA C 21 REMARK 465 THR C 22 REMARK 465 TRP C 23 REMARK 465 GLY B 2784 REMARK 465 GLY B 2799 REMARK 465 MET B 2800 REMARK 465 LYS B 2801 REMARK 465 GLY B 2802 REMARK 465 LYS B 2803 REMARK 465 ARG B 2832 REMARK 465 PRO B 2833 REMARK 465 ASN B 2834 REMARK 465 LEU B 2835 REMARK 465 GLN B 2873 REMARK 465 GLY B 2874 REMARK 465 GLN B 2875 REMARK 465 HIS B 2876 REMARK 465 TRP B 2877 REMARK 465 ASP B 2878 REMARK 465 GLN B 2879 REMARK 465 LYS B 2880 REMARK 465 SER B 2881 REMARK 465 SER B 2882 REMARK 465 ARG B 2883 REMARK 465 SER B 2884 REMARK 465 LEU B 2885 REMARK 465 PRO B 2886 REMARK 465 ALA B 2887 REMARK 465 ALA B 2888 REMARK 465 LEU B 2967 REMARK 465 ALA D 1 REMARK 465 ARG D 2 REMARK 465 THR D 3 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 PRO D 16 REMARK 465 ARG D 17 REMARK 465 LYS D 18 REMARK 465 GLN D 19 REMARK 465 LEU D 20 REMARK 465 ALA D 21 REMARK 465 THR D 22 REMARK 465 TRP D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A2785 CG CD NE CZ NH1 NH2 REMARK 470 GLN A2786 CG CD OE1 NE2 REMARK 470 ARG A2832 CG CD NE CZ NH1 NH2 REMARK 470 ASN A2834 CG OD1 ND2 REMARK 470 GLU A2863 CD OE1 OE2 REMARK 470 GLN A2870 CG CD OE1 NE2 REMARK 470 LEU A2889 CG CD1 CD2 REMARK 470 VAL A2891 CG1 CG2 REMARK 470 LYS A2936 CG CD CE NZ REMARK 470 LYS A2937 CG CD CE NZ REMARK 470 GLN A2939 CG CD OE1 NE2 REMARK 470 GLU A2952 CD OE1 OE2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 ARG C 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG B2785 CG CD NE CZ NH1 NH2 REMARK 470 GLN B2786 CG CD OE1 NE2 REMARK 470 ARG B2798 CG CD NE CZ NH1 NH2 REMARK 470 GLU B2863 CG CD OE1 OE2 REMARK 470 GLN B2870 CG CD OE1 NE2 REMARK 470 LEU B2889 CG CD1 CD2 REMARK 470 VAL B2891 CG1 CG2 REMARK 470 LYS B2936 CG CD CE NZ REMARK 470 LYS B2937 CE NZ REMARK 470 GLN B2939 CG CD OE1 NE2 REMARK 470 GLU B2942 CG CD OE1 OE2 REMARK 470 GLU B2952 CD OE1 OE2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3115 O HOH A 3128 2.03 REMARK 500 O LYS A 2816 O HOH A 3001 2.03 REMARK 500 NH1 ARG A 2901 O HOH A 3002 2.04 REMARK 500 NZ LYS A 2857 O HOH A 3003 2.06 REMARK 500 OE1 GLN A 2894 O HOH A 3004 2.09 REMARK 500 O SER A 2941 O HOH A 3002 2.10 REMARK 500 O HOH A 3081 O HOH A 3092 2.11 REMARK 500 O HOH A 3072 O HOH A 3102 2.11 REMARK 500 O HOH A 3110 O HOH A 3114 2.14 REMARK 500 O HOH A 3027 O HOH A 3046 2.19 REMARK 500 NH1 ARG B 2805 O HOH B 3001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3075 O HOH B 3002 1556 2.15 REMARK 500 O HOH A 3122 O HOH B 3092 3453 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A2940 -13.52 91.60 REMARK 500 SER C 10 -161.72 -78.55 REMARK 500 TYR B2837 77.62 50.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DS8 A 2785 2967 UNP O15417 TNC18_HUMAN 2785 2967 DBREF 8DS8 C 1 23 UNP V9H1G0 V9H1G0_HUMAN 2 24 DBREF 8DS8 B 2785 2967 UNP O15417 TNC18_HUMAN 2785 2967 DBREF 8DS8 D 1 23 UNP V9H1G0 V9H1G0_HUMAN 2 24 SEQADV 8DS8 GLY A 2784 UNP O15417 EXPRESSION TAG SEQADV 8DS8 TRP C 23 UNP V9H1G0 LYS 24 CONFLICT SEQADV 8DS8 GLY B 2784 UNP O15417 EXPRESSION TAG SEQADV 8DS8 TRP D 23 UNP V9H1G0 LYS 24 CONFLICT SEQRES 1 A 184 GLY ARG GLN LEU TRP LYS TRP PHE GLY LYS PRO THR GLN SEQRES 2 A 184 ARG ARG GLY MET LYS GLY LYS ALA ARG LYS LEU PHE TYR SEQRES 3 A 184 LYS ALA ILE VAL ARG GLY LYS GLU MET ILE ARG ILE GLY SEQRES 4 A 184 ASP CYS ALA VAL PHE LEU SER ALA GLY ARG PRO ASN LEU SEQRES 5 A 184 PRO TYR ILE GLY ARG ILE GLN SER MET TRP GLU SER TRP SEQRES 6 A 184 GLY ASN ASN MET VAL VAL ARG VAL LYS TRP PHE TYR HIS SEQRES 7 A 184 PRO GLU GLU THR SER PRO GLY LYS GLN PHE HIS GLN GLY SEQRES 8 A 184 GLN HIS TRP ASP GLN LYS SER SER ARG SER LEU PRO ALA SEQRES 9 A 184 ALA LEU ARG VAL SER SER GLN ARG LYS ASP PHE MET GLU SEQRES 10 A 184 ARG ALA LEU TYR GLN SER SER HIS VAL ASP GLU ASN ASP SEQRES 11 A 184 VAL GLN THR VAL SER HIS LYS CYS LEU VAL VAL GLY LEU SEQRES 12 A 184 GLU GLN TYR GLU GLN MET LEU LYS THR LYS LYS TYR GLN SEQRES 13 A 184 ASP SER GLU GLY LEU TYR TYR LEU ALA GLY THR TYR GLU SEQRES 14 A 184 PRO THR THR GLY MET ILE PHE SER THR ASP GLY VAL PRO SEQRES 15 A 184 VAL LEU SEQRES 1 C 23 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 C 23 LYS ALA PRO ARG LYS GLN LEU ALA THR TRP SEQRES 1 B 184 GLY ARG GLN LEU TRP LYS TRP PHE GLY LYS PRO THR GLN SEQRES 2 B 184 ARG ARG GLY MET LYS GLY LYS ALA ARG LYS LEU PHE TYR SEQRES 3 B 184 LYS ALA ILE VAL ARG GLY LYS GLU MET ILE ARG ILE GLY SEQRES 4 B 184 ASP CYS ALA VAL PHE LEU SER ALA GLY ARG PRO ASN LEU SEQRES 5 B 184 PRO TYR ILE GLY ARG ILE GLN SER MET TRP GLU SER TRP SEQRES 6 B 184 GLY ASN ASN MET VAL VAL ARG VAL LYS TRP PHE TYR HIS SEQRES 7 B 184 PRO GLU GLU THR SER PRO GLY LYS GLN PHE HIS GLN GLY SEQRES 8 B 184 GLN HIS TRP ASP GLN LYS SER SER ARG SER LEU PRO ALA SEQRES 9 B 184 ALA LEU ARG VAL SER SER GLN ARG LYS ASP PHE MET GLU SEQRES 10 B 184 ARG ALA LEU TYR GLN SER SER HIS VAL ASP GLU ASN ASP SEQRES 11 B 184 VAL GLN THR VAL SER HIS LYS CYS LEU VAL VAL GLY LEU SEQRES 12 B 184 GLU GLN TYR GLU GLN MET LEU LYS THR LYS LYS TYR GLN SEQRES 13 B 184 ASP SER GLU GLY LEU TYR TYR LEU ALA GLY THR TYR GLU SEQRES 14 B 184 PRO THR THR GLY MET ILE PHE SER THR ASP GLY VAL PRO SEQRES 15 B 184 VAL LEU SEQRES 1 D 23 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 D 23 LYS ALA PRO ARG LYS GLN LEU ALA THR TRP MODRES 8DS8 M3L C 9 LYS MODIFIED RESIDUE MODRES 8DS8 M3L D 9 LYS MODIFIED RESIDUE HET M3L C 9 12 HET M3L D 9 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 HOH *251(H2 O) HELIX 1 AA1 HIS A 2861 THR A 2865 5 5 HELIX 2 AA2 ARG A 2890 GLN A 2894 1 5 HELIX 3 AA3 ASP A 2897 ARG A 2901 1 5 HELIX 4 AA4 GLY A 2925 LYS A 2934 1 10 HELIX 5 AA5 HIS B 2861 THR B 2865 5 5 HELIX 6 AA6 ASP B 2897 ARG B 2901 1 5 HELIX 7 AA7 GLY B 2925 LEU B 2933 1 9 SHEET 1 AA1 3 LYS A2789 TRP A2790 0 SHEET 2 AA1 3 ALA A2811 ARG A2814 -1 O VAL A2813 N LYS A2789 SHEET 3 AA1 3 GLU A2817 ARG A2820 -1 O GLU A2817 N ARG A2814 SHEET 1 AA2 7 GLN A2796 ARG A2798 0 SHEET 2 AA2 7 LYS A2806 TYR A2809 -1 O PHE A2808 N GLN A2796 SHEET 3 AA2 7 TYR A2837 SER A2847 -1 O GLU A2846 N LEU A2807 SHEET 4 AA2 7 CYS A2824 PHE A2827 -1 N PHE A2827 O TYR A2837 SHEET 5 AA2 7 VAL A2917 VAL A2924 -1 O HIS A2919 N VAL A2826 SHEET 6 AA2 7 LEU A2944 TYR A2951 1 O TYR A2945 N LEU A2922 SHEET 7 AA2 7 ILE A2958 PHE A2959 -1 O PHE A2959 N THR A2950 SHEET 1 AA3 7 GLN A2796 ARG A2798 0 SHEET 2 AA3 7 LYS A2806 TYR A2809 -1 O PHE A2808 N GLN A2796 SHEET 3 AA3 7 TYR A2837 SER A2847 -1 O GLU A2846 N LEU A2807 SHEET 4 AA3 7 ASN A2851 TYR A2860 -1 O VAL A2853 N TRP A2845 SHEET 5 AA3 7 ALA A2902 ASP A2913 -1 O ASP A2910 N VAL A2856 SHEET 6 AA3 7 LEU A2944 TYR A2951 1 O ALA A2948 N LEU A2903 SHEET 7 AA3 7 ILE A2958 PHE A2959 -1 O PHE A2959 N THR A2950 SHEET 1 AA4 3 LYS B2789 TRP B2790 0 SHEET 2 AA4 3 ALA B2811 ARG B2814 -1 O VAL B2813 N LYS B2789 SHEET 3 AA4 3 GLU B2817 ARG B2820 -1 O ILE B2819 N ILE B2812 SHEET 1 AA5 7 LEU B2807 TYR B2809 0 SHEET 2 AA5 7 ILE B2838 SER B2847 -1 O GLU B2846 N LEU B2807 SHEET 3 AA5 7 CYS B2824 PHE B2827 -1 N ALA B2825 O GLY B2839 SHEET 4 AA5 7 VAL B2917 VAL B2924 -1 O HIS B2919 N VAL B2826 SHEET 5 AA5 7 LEU B2944 TYR B2951 1 O TYR B2945 N VAL B2924 SHEET 6 AA5 7 ASN B2851 TRP B2858 0 SHEET 7 AA5 7 VAL B2909 ASP B2913 -1 O ASP B2910 N VAL B2856 SHEET 1 AA6 6 ALA B2902 GLN B2905 0 SHEET 2 AA6 6 LEU B2944 TYR B2951 1 O TYR B2951 N GLN B2905 SHEET 3 AA6 6 VAL B2917 VAL B2924 1 N VAL B2924 O TYR B2945 SHEET 4 AA6 6 CYS B2824 PHE B2827 -1 N VAL B2826 O HIS B2919 SHEET 5 AA6 6 ILE B2838 SER B2847 -1 O GLY B2839 N ALA B2825 SHEET 6 AA6 6 ILE B2958 PHE B2959 0 LINK C ARG C 8 N M3L C 9 1555 1555 1.33 LINK C M3L C 9 N SER C 10 1555 1555 1.33 LINK C ARG D 8 N M3L D 9 1555 1555 1.32 LINK C M3L D 9 N SER D 10 1555 1555 1.33 CRYST1 73.804 120.828 46.632 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021445 0.00000