HEADER VIRAL PROTEIN 22-JUL-22 8DSP TITLE CRYO-EM STRUCTURE OF THE PROXIMAL HALF FIBER IN DEL7.3K2R1 MATURE TITLE 2 PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL FIBER PROTEIN; COMPND 3 CHAIN: C, E, F; COMPND 4 SYNONYM: GENE PRODUCT 17,GP17,TAIL FIBER PROTEIN GP17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T7; SOURCE 3 ORGANISM_TAXID: 10760 KEYWDS BACTERIOPHAGE T7, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR C.WANG,J.LIU,I.J.MOLINEUX REVDAT 1 26-JUL-23 8DSP 0 JRNL AUTH C.WANG,J.LIU,I.J.MOLINEUX JRNL TITL ASYMMETRIC RECONSTRUCTION OF GP8-GP11 WITH TERMINAL DSDNA JRNL TITL 2 ASSOCIATED FROM THE DEL7.3K2R1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 99318 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8DSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267302. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA PHAGE T7 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 4 REMARK 465 ILE C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 48 -54.91 -145.63 REMARK 500 ARG C 51 22.09 -147.38 REMARK 500 PHE C 52 -95.18 43.67 REMARK 500 ALA C 53 -77.34 117.15 REMARK 500 THR C 120 -166.24 -79.31 REMARK 500 PRO C 150 -177.00 -68.35 REMARK 500 THR C 156 34.11 -94.36 REMARK 500 MET C 157 -114.33 -149.64 REMARK 500 ASP E 14 63.64 60.19 REMARK 500 ASN E 47 -2.99 71.12 REMARK 500 SER E 92 -177.78 -61.81 REMARK 500 LEU E 139 -179.45 61.52 REMARK 500 ALA E 140 136.24 129.39 REMARK 500 VAL E 143 -55.96 -146.38 REMARK 500 ASN E 166 2.39 -67.24 REMARK 500 VAL F 8 -51.99 -126.64 REMARK 500 ASP F 14 40.85 37.67 REMARK 500 ASN F 47 -5.88 72.15 REMARK 500 THR F 56 39.04 72.19 REMARK 500 GLU F 74 65.88 60.79 REMARK 500 THR F 120 -161.40 -104.21 REMARK 500 ASN F 138 59.23 37.71 REMARK 500 ASN F 141 56.08 -93.14 REMARK 500 ALA F 148 -176.05 -171.38 REMARK 500 VAL F 149 58.45 -157.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27657 RELATED DB: EMDB DBREF 8DSP C 4 167 UNP P03748 FIBER_BPT7 4 167 DBREF 8DSP E 4 167 UNP P03748 FIBER_BPT7 4 167 DBREF 8DSP F 4 167 UNP P03748 FIBER_BPT7 4 167 SEQRES 1 C 164 VAL ILE LYS THR VAL LEU THR TYR GLN LEU ASP GLY SER SEQRES 2 C 164 ASN ARG ASP PHE ASN ILE PRO PHE GLU TYR LEU ALA ARG SEQRES 3 C 164 LYS PHE VAL VAL VAL THR LEU ILE GLY VAL ASP ARG LYS SEQRES 4 C 164 VAL LEU THR ILE ASN THR ASP TYR ARG PHE ALA THR ARG SEQRES 5 C 164 THR THR ILE SER LEU THR LYS ALA TRP GLY PRO ALA ASP SEQRES 6 C 164 GLY TYR THR THR ILE GLU LEU ARG ARG VAL THR SER THR SEQRES 7 C 164 THR ASP ARG LEU VAL ASP PHE THR ASP GLY SER ILE LEU SEQRES 8 C 164 ARG ALA TYR ASP LEU ASN VAL ALA GLN ILE GLN THR MET SEQRES 9 C 164 HIS VAL ALA GLU GLU ALA ARG ASP LEU THR THR ASP THR SEQRES 10 C 164 ILE GLY VAL ASN ASN ASP GLY HIS LEU ASP ALA ARG GLY SEQRES 11 C 164 ARG ARG ILE VAL ASN LEU ALA ASN ALA VAL ASP ASP ARG SEQRES 12 C 164 ASP ALA VAL PRO PHE GLY GLN LEU LYS THR MET ASN GLN SEQRES 13 C 164 ASN SER TRP GLN ALA ARG ASN GLU SEQRES 1 E 164 VAL ILE LYS THR VAL LEU THR TYR GLN LEU ASP GLY SER SEQRES 2 E 164 ASN ARG ASP PHE ASN ILE PRO PHE GLU TYR LEU ALA ARG SEQRES 3 E 164 LYS PHE VAL VAL VAL THR LEU ILE GLY VAL ASP ARG LYS SEQRES 4 E 164 VAL LEU THR ILE ASN THR ASP TYR ARG PHE ALA THR ARG SEQRES 5 E 164 THR THR ILE SER LEU THR LYS ALA TRP GLY PRO ALA ASP SEQRES 6 E 164 GLY TYR THR THR ILE GLU LEU ARG ARG VAL THR SER THR SEQRES 7 E 164 THR ASP ARG LEU VAL ASP PHE THR ASP GLY SER ILE LEU SEQRES 8 E 164 ARG ALA TYR ASP LEU ASN VAL ALA GLN ILE GLN THR MET SEQRES 9 E 164 HIS VAL ALA GLU GLU ALA ARG ASP LEU THR THR ASP THR SEQRES 10 E 164 ILE GLY VAL ASN ASN ASP GLY HIS LEU ASP ALA ARG GLY SEQRES 11 E 164 ARG ARG ILE VAL ASN LEU ALA ASN ALA VAL ASP ASP ARG SEQRES 12 E 164 ASP ALA VAL PRO PHE GLY GLN LEU LYS THR MET ASN GLN SEQRES 13 E 164 ASN SER TRP GLN ALA ARG ASN GLU SEQRES 1 F 164 VAL ILE LYS THR VAL LEU THR TYR GLN LEU ASP GLY SER SEQRES 2 F 164 ASN ARG ASP PHE ASN ILE PRO PHE GLU TYR LEU ALA ARG SEQRES 3 F 164 LYS PHE VAL VAL VAL THR LEU ILE GLY VAL ASP ARG LYS SEQRES 4 F 164 VAL LEU THR ILE ASN THR ASP TYR ARG PHE ALA THR ARG SEQRES 5 F 164 THR THR ILE SER LEU THR LYS ALA TRP GLY PRO ALA ASP SEQRES 6 F 164 GLY TYR THR THR ILE GLU LEU ARG ARG VAL THR SER THR SEQRES 7 F 164 THR ASP ARG LEU VAL ASP PHE THR ASP GLY SER ILE LEU SEQRES 8 F 164 ARG ALA TYR ASP LEU ASN VAL ALA GLN ILE GLN THR MET SEQRES 9 F 164 HIS VAL ALA GLU GLU ALA ARG ASP LEU THR THR ASP THR SEQRES 10 F 164 ILE GLY VAL ASN ASN ASP GLY HIS LEU ASP ALA ARG GLY SEQRES 11 F 164 ARG ARG ILE VAL ASN LEU ALA ASN ALA VAL ASP ASP ARG SEQRES 12 F 164 ASP ALA VAL PRO PHE GLY GLN LEU LYS THR MET ASN GLN SEQRES 13 F 164 ASN SER TRP GLN ALA ARG ASN GLU HELIX 1 AA1 ALA C 28 VAL C 32 5 5 HELIX 2 AA2 GLY C 65 GLY C 69 5 5 HELIX 3 AA3 ARG C 95 THR C 120 1 26 HELIX 4 AA4 PRO C 150 THR C 156 1 7 HELIX 5 AA5 MET C 157 ARG C 165 1 9 HELIX 6 AA6 ALA E 28 LYS E 30 5 3 HELIX 7 AA7 GLY E 65 ASP E 68 5 4 HELIX 8 AA8 ARG E 95 THR E 120 1 26 HELIX 9 AA9 PRO E 150 ASN E 166 1 17 HELIX 10 AB1 ALA F 28 LYS F 30 5 3 HELIX 11 AB2 GLY F 65 ASP F 68 5 4 HELIX 12 AB3 ARG F 95 THR F 118 1 24 HELIX 13 AB4 PHE F 151 GLU F 167 1 17 SHEET 1 AA1 4 THR C 10 GLN C 12 0 SHEET 2 AA1 4 THR C 72 GLU C 74 -1 O ILE C 73 N TYR C 11 SHEET 3 AA1 4 THR C 35 ILE C 37 -1 O ILE C 37 N THR C 72 SHEET 4 AA1 4 ARG C 41 VAL C 43 -1 O LYS C 42 N LEU C 36 SHEET 1 AA2 2 ASP C 19 ASN C 21 0 SHEET 2 AA2 2 THR C 57 SER C 59 -1 O ILE C 58 N PHE C 20 SHEET 1 AA3 2 GLY C 122 VAL C 123 0 SHEET 2 AA3 2 LEU C 129 ASP C 130 -1 O ASP C 130 N GLY C 122 SHEET 1 AA4 3 ILE C 136 ASN C 138 0 SHEET 2 AA4 3 LEU F 129 ASP F 130 1 O LEU F 129 N VAL C 137 SHEET 3 AA4 3 GLY F 122 VAL F 123 -1 N GLY F 122 O ASP F 130 SHEET 1 AA5 4 VAL E 8 LEU E 9 0 SHEET 2 AA5 4 LEU E 75 ARG E 77 -1 O LEU E 75 N LEU E 9 SHEET 3 AA5 4 VAL E 32 GLY E 38 -1 N VAL E 33 O ARG E 76 SHEET 4 AA5 4 LYS E 42 VAL E 43 -1 O LYS E 42 N LEU E 36 SHEET 1 AA6 4 VAL E 8 LEU E 9 0 SHEET 2 AA6 4 LEU E 75 ARG E 77 -1 O LEU E 75 N LEU E 9 SHEET 3 AA6 4 VAL E 32 GLY E 38 -1 N VAL E 33 O ARG E 76 SHEET 4 AA6 4 TYR E 70 THR E 72 -1 O THR E 72 N ILE E 37 SHEET 1 AA7 3 ASP E 19 ASN E 21 0 SHEET 2 AA7 3 THR E 57 LEU E 60 -1 O ILE E 58 N PHE E 20 SHEET 3 AA7 3 TYR E 50 THR E 54 -1 N ARG E 51 O SER E 59 SHEET 1 AA8 2 GLY E 122 VAL E 123 0 SHEET 2 AA8 2 LEU E 129 ASP E 130 -1 O ASP E 130 N GLY E 122 SHEET 1 AA9 3 ASP F 19 ASN F 21 0 SHEET 2 AA9 3 THR F 57 SER F 59 -1 O ILE F 58 N PHE F 20 SHEET 3 AA9 3 PHE F 52 THR F 54 -1 N THR F 54 O THR F 57 SHEET 1 AB1 3 LYS F 42 VAL F 43 0 SHEET 2 AB1 3 VAL F 32 GLY F 38 -1 N LEU F 36 O LYS F 42 SHEET 3 AB1 3 TYR F 70 THR F 72 -1 O THR F 71 N ILE F 37 SHEET 1 AB2 3 LYS F 42 VAL F 43 0 SHEET 2 AB2 3 VAL F 32 GLY F 38 -1 N LEU F 36 O LYS F 42 SHEET 3 AB2 3 LEU F 75 ARG F 77 -1 O ARG F 76 N VAL F 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000