HEADER TRANSPORT PROTEIN 25-JUL-22 8DTE TITLE CRYSTAL STRUCTURE OF A TOLUENE TOLERANCE PERIPLASMIC TRANSPORT PROTEIN TITLE 2 FROM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NEGOA.18500.A.B2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE NCCP11945; SOURCE 3 ORGANISM_TAXID: 521006; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 GENE: NGK_2593; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NEGOA.18500.A.B2 KEYWDS SSGCID, PERIPLASMIC TRANSPORT, TOLUENE TOLERANCE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 8DTE 1 REMARK REVDAT 2 14-FEB-24 8DTE 1 REMARK REVDAT 1 10-AUG-22 8DTE 0 JRNL AUTH N.D.DEBOUVER,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A TOLUENE TOLERANCE PERIPLASMIC JRNL TITL 2 TRANSPORT PROTEIN FROM NEISSERIA GONORRHOEAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9700 - 4.5700 0.98 1325 169 0.2033 0.2299 REMARK 3 2 4.5700 - 3.6300 0.99 1264 127 0.1730 0.2036 REMARK 3 3 3.6300 - 3.1700 1.00 1241 129 0.2021 0.2536 REMARK 3 4 3.1700 - 2.8800 1.00 1201 137 0.2086 0.2536 REMARK 3 5 2.8800 - 2.6800 1.00 1252 112 0.2317 0.3062 REMARK 3 6 2.6800 - 2.5200 1.00 1173 149 0.2120 0.2296 REMARK 3 7 2.5200 - 2.3900 1.00 1196 144 0.1993 0.2302 REMARK 3 8 2.3900 - 2.2900 1.00 1189 133 0.2066 0.2788 REMARK 3 9 2.2900 - 2.2000 1.00 1184 145 0.2136 0.2288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2118 23.1145 -14.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.4683 REMARK 3 T33: 0.3199 T12: -0.1021 REMARK 3 T13: -0.0732 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 9.7748 L22: 6.7491 REMARK 3 L33: 4.2927 L12: -3.9666 REMARK 3 L13: -1.0847 L23: -0.4312 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.8474 S13: 0.0673 REMARK 3 S21: -0.6099 S22: 0.0503 S23: 0.3875 REMARK 3 S31: -0.0819 S32: 0.1534 S33: -0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6321 23.7768 8.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.3866 REMARK 3 T33: 0.2958 T12: 0.0125 REMARK 3 T13: 0.0331 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 5.8458 L22: 4.4111 REMARK 3 L33: 2.4022 L12: -1.2372 REMARK 3 L13: 0.6729 L23: -2.7866 REMARK 3 S TENSOR REMARK 3 S11: 0.2811 S12: -0.1725 S13: 0.6711 REMARK 3 S21: 0.3015 S22: -0.0039 S23: 0.2273 REMARK 3 S31: -1.1056 S32: -0.4484 S33: -0.0907 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6356 15.8766 0.9298 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.4224 REMARK 3 T33: 0.3179 T12: 0.0056 REMARK 3 T13: 0.0407 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.9207 L22: 4.4217 REMARK 3 L33: 2.7643 L12: 0.2028 REMARK 3 L13: 2.0436 L23: 0.4175 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.2903 S13: -0.0054 REMARK 3 S21: -0.1464 S22: 0.0027 S23: 0.1401 REMARK 3 S31: 0.5947 S32: 1.1907 S33: -0.1114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5223 27.2329 -12.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.4467 T22: 0.4328 REMARK 3 T33: 0.6393 T12: -0.0211 REMARK 3 T13: -0.1749 T23: 0.1682 REMARK 3 L TENSOR REMARK 3 L11: 4.9900 L22: 5.3069 REMARK 3 L33: 8.5216 L12: -0.4876 REMARK 3 L13: -1.1317 L23: 0.5434 REMARK 3 S TENSOR REMARK 3 S11: 0.3854 S12: 0.5152 S13: 0.5714 REMARK 3 S21: -0.6663 S22: -0.1161 S23: 0.9142 REMARK 3 S31: 0.2628 S32: -1.7586 S33: -0.4149 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6885 22.8290 -11.0577 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.5498 REMARK 3 T33: 0.3584 T12: -0.0650 REMARK 3 T13: 0.0659 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 3.5515 L22: 5.8776 REMARK 3 L33: 3.2637 L12: -0.6066 REMARK 3 L13: 2.2439 L23: 0.2998 REMARK 3 S TENSOR REMARK 3 S11: 0.1422 S12: -0.0567 S13: -0.1757 REMARK 3 S21: -1.5073 S22: -0.2181 S23: -0.5781 REMARK 3 S31: -0.4304 S32: -0.2979 S33: -0.0655 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3246 16.7344 5.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.3160 REMARK 3 T33: 0.2494 T12: -0.0211 REMARK 3 T13: 0.0217 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.7829 L22: 2.4956 REMARK 3 L33: 8.4836 L12: -1.9433 REMARK 3 L13: 1.5484 L23: -2.8769 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.1315 S13: -0.0031 REMARK 3 S21: 0.0531 S22: 0.0967 S23: 0.1751 REMARK 3 S31: 0.3410 S32: -0.3574 S33: -0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.52 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.82 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: [TARGET: NEGOA.18500.A.B2.PS38078 - REMARK 280 50MG/ML] [BARCODE: 321600A1] [PIN: MND9-2] [CRYSTALLIZATION: REMARK 280 SPARSE SCREEN - MORPHEUS A1 - 10% (W/V) PEG 20000, 20% (V/V) PEG REMARK 280 MME 550, 0.03M OF EACH DIVALENT CATION(0.3M MAGNESIUM CHLORIDE, REMARK 280 0.3M CALCIUM CHLORIDE), 0.1M MES/IMIDAZOLE PH 6.5, 14C, 0.2:0.2 REMARK 280 DROP RATIO] [CRYO: DIRECT], VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.78500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.89250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.67750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.78500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 125.67750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.89250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 323 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 GLY A 195 REMARK 465 LYS A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ILE A 134 CG1 CG2 CD1 REMARK 470 LYS A 192 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 360 O HOH A 369 2.14 REMARK 500 O HOH A 360 O HOH A 370 2.15 REMARK 500 OH TYR A 99 O HOH A 301 2.15 REMARK 500 O HOH A 388 O HOH A 392 2.17 REMARK 500 O HOH A 378 O HOH A 387 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 106 40.08 -102.64 REMARK 500 ASN A 108 34.20 -92.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 112 OD1 REMARK 620 2 ASN A 112 OD1 0.0 REMARK 620 3 VAL A 113 O 90.3 90.3 REMARK 620 4 VAL A 113 O 90.3 90.3 0.0 REMARK 620 5 ASP A 115 OD1 164.6 164.6 76.5 76.5 REMARK 620 6 ASP A 115 OD1 164.6 164.6 76.5 76.5 0.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NEGOA.18500.A.B2 RELATED DB: TARGETTRACK DBREF 8DTE A 23 196 UNP B4RRD5 B4RRD5_NEIG2 23 196 SEQADV 8DTE MET A 14 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE ALA A 15 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 16 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 17 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 18 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 19 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 20 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE HIS A 21 UNP B4RRD5 EXPRESSION TAG SEQADV 8DTE MET A 22 UNP B4RRD5 EXPRESSION TAG SEQRES 1 A 183 MET ALA HIS HIS HIS HIS HIS HIS MET SER PRO ALA ASP SEQRES 2 A 183 ALA VAL GLY GLN ILE ARG GLN ASN ALA THR GLN VAL LEU SEQRES 3 A 183 THR ILE LEU LYS SER GLY ASP ALA ALA SER ALA ARG PRO SEQRES 4 A 183 LYS ALA GLU ALA TYR ALA VAL PRO TYR PHE ASP PHE GLN SEQRES 5 A 183 ARG MET THR ALA LEU ALA VAL GLY ASN PRO TRP ARG THR SEQRES 6 A 183 ALA SER ASP ALA GLN LYS GLN ALA LEU ALA LYS GLU PHE SEQRES 7 A 183 GLN THR LEU LEU ILE ARG THR TYR SER GLY THR MET LEU SEQRES 8 A 183 LYS PHE LYS ASN ALA THR VAL ASN VAL LYS ASP ASN PRO SEQRES 9 A 183 ILE VAL ASN LYS GLY GLY LYS GLU ILE VAL VAL ARG ALA SEQRES 10 A 183 GLU VAL GLY ILE PRO GLY GLN LYS PRO VAL ASN MET ASP SEQRES 11 A 183 PHE THR THR TYR GLN SER GLY GLY LYS TYR ARG THR TYR SEQRES 12 A 183 ASN VAL ALA ILE GLU GLY THR SER LEU VAL THR VAL TYR SEQRES 13 A 183 ARG ASN GLN PHE GLY GLU ILE ILE LYS ALA LYS GLY ILE SEQRES 14 A 183 ASP GLY LEU ILE ALA GLU LEU LYS ALA LYS ASN GLY GLY SEQRES 15 A 183 LYS HET MG A 201 1 HET CL A 202 1 HET CL A 203 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *93(H2 O) HELIX 1 AA1 SER A 23 LYS A 43 1 21 HELIX 2 AA2 ASP A 46 VAL A 59 1 14 HELIX 3 AA3 PRO A 60 PHE A 62 5 3 HELIX 4 AA4 ASP A 63 GLY A 73 1 11 HELIX 5 AA5 ASN A 74 ALA A 79 1 6 HELIX 6 AA6 SER A 80 PHE A 106 1 27 HELIX 7 AA7 LYS A 121 LYS A 124 5 4 HELIX 8 AA8 VAL A 166 VAL A 168 5 3 HELIX 9 AA9 TYR A 169 ASN A 193 1 25 SHEET 1 AA1 3 THR A 110 VAL A 113 0 SHEET 2 AA1 3 GLU A 125 GLY A 133 -1 O GLU A 131 N ASN A 112 SHEET 3 AA1 3 ILE A 118 ASN A 120 -1 N ILE A 118 O VAL A 127 SHEET 1 AA2 5 THR A 110 VAL A 113 0 SHEET 2 AA2 5 GLU A 125 GLY A 133 -1 O GLU A 131 N ASN A 112 SHEET 3 AA2 5 VAL A 140 SER A 149 -1 O PHE A 144 N VAL A 128 SHEET 4 AA2 5 LYS A 152 ILE A 160 -1 O LYS A 152 N SER A 149 SHEET 5 AA2 5 THR A 163 SER A 164 -1 O THR A 163 N ILE A 160 LINK OD1 ASN A 112 MG MG A 201 1555 1555 2.30 LINK OD1 ASN A 112 MG MG A 201 1555 7464 2.30 LINK O VAL A 113 MG MG A 201 1555 1555 2.56 LINK O VAL A 113 MG MG A 201 1555 7464 2.56 LINK OD1 ASP A 115 MG MG A 201 1555 1555 2.44 LINK OD1 ASP A 115 MG MG A 201 1555 7464 2.44 CRYST1 51.760 51.760 167.570 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005968 0.00000