HEADER    HYDROLASE/DNA                           01-AUG-22   8DWD              
TITLE     ADENINE GLYCOSYLASE MUTY VARIANT E43S IN COMPLEX WITH DNA CONTAINING  
TITLE    2 D(8-OXO-G) PAIRED WITH AN AP SITE GENERATED BY THE ENZYME ACTING ON  
TITLE    3 PURINE                                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ADENINE DNA GLYCOSYLASE;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MUTATION: YES;                                                       
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3');       
COMPND   8 CHAIN: B;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MOL_ID: 3;                                                           
COMPND  11 MOLECULE: DNA (5'-D(*TP*GP*TP*CP*CP*AP*(ORP)P*GP*TP*CP*T)-3');       
COMPND  12 CHAIN: C;                                                            
COMPND  13 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;                 
SOURCE   3 ORGANISM_TAXID: 1422;                                                
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   7 MOL_ID: 2;                                                           
SOURCE   8 SYNTHETIC: YES;                                                      
SOURCE   9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  10 ORGANISM_TAXID: 32630;                                               
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  14 ORGANISM_TAXID: 32630                                                
KEYWDS    PROTEIN-DNA COMPLEX, DNA REPAIR, BASE EXCISION REPAIR,                
KEYWDS   2 APURINIC/APYRIMIDINIC, HYDROLASE, HYDROLASE-DNA COMPLEX              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    L.P.RUSSELBURG,M.DEMIR,S.S.DAVID,M.P.HORVATH                          
REVDAT   2   22-MAY-24 8DWD    1       REMARK                                   
REVDAT   1   09-AUG-23 8DWD    0                                                
JRNL        AUTH   L.P.RUSSELBURG,M.DEMIR,K.CEDENO,S.S.DAVID,M.P.HORVATH        
JRNL        TITL   STRUCTURAL BASIS FOR BASE ENGAGEMENT AND STEREOCHEMISTRY     
JRNL        TITL 2 REVEALED BY ALTERATION OF CATALYTIC RESIDUE GLU43 IN DNA     
JRNL        TITL 3 REPAIR GLYCOSYLASE MUTY                                      
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.68 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.20.1_4487                                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2           
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 42.96                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 100379                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.223                           
REMARK   3   R VALUE            (WORKING SET) : 0.222                           
REMARK   3   FREE R VALUE                     : 0.245                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 2.510                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2520                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 42.9600 -  4.4000    1.00     5470   139  0.1834 0.2082        
REMARK   3     2  4.4000 -  3.4900    1.00     5468   124  0.1742 0.1689        
REMARK   3     3  3.4900 -  3.0500    1.00     5474   131  0.1918 0.2290        
REMARK   3     4  3.0500 -  2.7700    1.00     5443   141  0.2388 0.2893        
REMARK   3     5  2.7700 -  2.5700    1.00     5476   142  0.2369 0.2438        
REMARK   3     6  2.5700 -  2.4200    1.00     5435   143  0.2485 0.2423        
REMARK   3     7  2.4200 -  2.3000    1.00     5458   143  0.2471 0.2452        
REMARK   3     8  2.3000 -  2.2000    1.00     5376   160  0.2551 0.3014        
REMARK   3     9  2.2000 -  2.1200    1.00     5478   140  0.2506 0.2732        
REMARK   3    10  2.1200 -  2.0400    1.00     5446   139  0.2701 0.3293        
REMARK   3    11  2.0400 -  1.9800    1.00     5425   139  0.2933 0.3128        
REMARK   3    12  1.9800 -  1.9200    1.00     5476   133  0.3070 0.3447        
REMARK   3    13  1.9200 -  1.8700    0.99     5378   144  0.3123 0.3408        
REMARK   3    14  1.8700 -  1.8300    1.00     5484   148  0.3156 0.2945        
REMARK   3    15  1.8300 -  1.7900    0.99     5363   144  0.3128 0.3403        
REMARK   3    16  1.7900 -  1.7500    0.99     5463   129  0.3378 0.3558        
REMARK   3    17  1.7500 -  1.7100    0.99     5312   140  0.3565 0.3410        
REMARK   3    18  1.7100 -  1.6800    0.98     5434   141  0.3887 0.3905        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.10                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.270            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.363           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 30.73                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 49.79                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.008           3270                                  
REMARK   3   ANGLE     :  1.029           4566                                  
REMARK   3   CHIRALITY :  0.052            512                                  
REMARK   3   PLANARITY :  0.009            512                                  
REMARK   3   DIHEDRAL  : 17.523           1214                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 3                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ((CHAIN A) AND (RESID 8:228 OR RESID 401 OR RESID      
REMARK   3               403))                                                  
REMARK   3    ORIGIN FOR THE GROUP (A):  12.8498   2.2993   3.0368              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.2413 T22:   0.3252                                     
REMARK   3      T33:   0.1902 T12:   0.0673                                     
REMARK   3      T13:   0.0533 T23:   0.0143                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.9597 L22:   0.9656                                     
REMARK   3      L33:   0.4343 L12:  -0.3768                                     
REMARK   3      L13:  -0.4041 L23:  -0.2623                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.2682 S12:   1.5266 S13:   0.1693                       
REMARK   3      S21:  -0.1603 S22:  -0.1942 S23:  -0.0350                       
REMARK   3      S31:  -0.1063 S32:  -0.0956 S33:  -0.0334                       
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    SELECTION: ((CHAIN A) AND (RESID 229:360 OR RESID 402 OR RESID    
REMARK   3               404))                                                  
REMARK   3    ORIGIN FOR THE GROUP (A):  20.7826   7.7026  37.3313              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4886 T22:   0.5682                                     
REMARK   3      T33:   0.3499 T12:  -0.0381                                     
REMARK   3      T13:  -0.0573 T23:  -0.1286                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.4036 L22:   0.0826                                     
REMARK   3      L33:   0.1864 L12:   0.0420                                     
REMARK   3      L13:  -0.0042 L23:   0.0011                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0768 S12:  -0.6105 S13:   0.3288                       
REMARK   3      S21:   0.2530 S22:   0.0991 S23:  -0.2565                       
REMARK   3      S31:   0.0341 S32:   0.3959 S33:   0.0026                       
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    SELECTION: ((CHAIN B AND RESID 1:11) OR (CHAIN C AND RESID        
REMARK   3               12:22))                                                
REMARK   3    ORIGIN FOR THE GROUP (A):  20.1470  -3.9945  16.1449              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3600 T22:   0.2550                                     
REMARK   3      T33:   0.3428 T12:   0.0121                                     
REMARK   3      T13:  -0.0067 T23:   0.0203                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.2315 L22:   0.3263                                     
REMARK   3      L33:   0.1580 L12:  -0.2705                                     
REMARK   3      L13:   0.0442 L23:   0.0025                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0714 S12:   0.0078 S13:  -0.3084                       
REMARK   3      S21:  -0.1166 S22:  -0.1290 S23:  -0.1337                       
REMARK   3      S31:   0.3501 S32:   0.1392 S33:   0.0000                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 8DWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-22.                  
REMARK 100 THE DEPOSITION ID IS D_1000267480.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 18-MAY-21                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 5.0.2                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00000                            
REMARK 200  MONOCHROMATOR                  : DOUBLE-CRYSTAL, SI(111)            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 100381                             
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.680                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 43.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : 6.760                              
REMARK 200  R MERGE                    (I) : 0.09000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 9.4100                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.72                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.5                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 7.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 1.90000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.080                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: 6U7T                                                 
REMARK 200                                                                      
REMARK 200 REMARK: YELLOW, HEXAGONAL ROD                                        
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 48.20                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CALCIUM ACETATE, ETHYLENE      
REMARK 280  GLYCOL, TRIS-HCL, BETA-MERCAPTOETHANOL, VAPOR DIFFUSION, HANGING    
REMARK 280  DROP, TEMPERATURE 295K                                              
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       18.87000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       70.34500            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       42.96000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       70.34500            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       18.87000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       42.96000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 17890 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     THR A     2                                                      
REMARK 465     ARG A     3                                                      
REMARK 465     GLU A     4                                                      
REMARK 465     THR A     5                                                      
REMARK 465     GLU A     6                                                      
REMARK 465     ARG A     7                                                      
REMARK 465     GLY A   275                                                      
REMARK 465     ALA A   276                                                      
REMARK 465     GLN A   289                                                      
REMARK 465     TYR A   290                                                      
REMARK 465     GLY A   291                                                      
REMARK 465     LEU A   292                                                      
REMARK 465     GLN A   293                                                      
REMARK 465     GLY A   361                                                      
REMARK 465     VAL A   362                                                      
REMARK 465     ARG A   363                                                      
REMARK 465     ARG A   364                                                      
REMARK 465     PRO A   365                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     PHE A   8    N    CA   CB   CG   CD1  CD2  CE1                   
REMARK 470     PHE A   8    CE2  CZ                                             
REMARK 470     GLU A  12    CG   CD   OE1  OE2                                  
REMARK 470     ARG A  15    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A  52    CG   CD   OE1  OE2                                  
REMARK 470     ASP A  75    CG   OD1  OD2                                       
REMARK 470     GLU A  76    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 116    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 167    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLN A 172    CG   CD   OE1  NE2                                  
REMARK 470     GLU A 176    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 201    CD   NE   CZ   NH1  NH2                             
REMARK 470     ARG A 202    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 219    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 228    CD   CE   NZ                                        
REMARK 470     MET A 229    CG   SD   CE                                        
REMARK 470     LYS A 230    CE   NZ                                             
REMARK 470     LYS A 231    CG   CD   CE   NZ                                   
REMARK 470     LYS A 235    CD   CE   NZ                                        
REMARK 470     ASP A 277    CG   OD1  OD2                                       
REMARK 470     LYS A 281    CG   CD   CE   NZ                                   
REMARK 470     GLN A 284    CG   CD   OE1  NE2                                  
REMARK 470     GLU A 288    CG   CD   OE1  OE2                                  
REMARK 470     VAL A 294    N    CA   CB   CG1  CG2                             
REMARK 470     GLU A 295    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 320    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 328    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 356    CD   CE   NZ                                        
REMARK 470      DT C  12    O5'  C5'  C4'  O4'  C3'  C2'  C1'                   
REMARK 470      DT C  12    N1   C2   O2   N3   C4   O4   C5                    
REMARK 470      DT C  12    C7   C6                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OP2   DT C    22     O    HOH C   101              1.97            
REMARK 500   O    HOH B   111     O    HOH B   127              2.14            
REMARK 500   OE1  GLU A   267     O    HOH A   501              2.14            
REMARK 500   O    HOH B   129     O    HOH B   130              2.15            
REMARK 500   OE2  GLU A   188     O    HOH A   502              2.16            
REMARK 500   O    HOH A   513     O    HOH A   606              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   OE2  GLU A    59     O3'   DT C    22     1455     2.13            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    CYS A 198   CA  -  CB  -  SG  ANGL. DEV. =   8.9 DEGREES          
REMARK 500     DA B   2   O4' -  C1' -  N9  ANGL. DEV. =   3.5 DEGREES          
REMARK 500     DC B   5   O4' -  C1' -  N1  ANGL. DEV. =   2.9 DEGREES          
REMARK 500     DT B   7   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DC C  16   O4' -  C1' -  N1  ANGL. DEV. =   3.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A  34       39.85    -99.78                                   
REMARK 500    TYR A  88       69.12     33.55                                   
REMARK 500    PRO A 139       49.45    -79.60                                   
REMARK 500    VAL A 197      -57.07   -120.82                                   
REMARK 500    ARG A 202       61.21     37.94                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 403  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 SER A 118   O                                                      
REMARK 620 2 SER A 118   OG   70.7                                              
REMARK 620 3 VAL A 123   O    94.2  99.2                                        
REMARK 620 4 HOH A 521   O    63.4 133.9  80.2                                  
REMARK 620 5 HOH A 524   O   143.7  73.2  87.3 151.5                            
REMARK 620 6 HOH A 618   O    80.5  80.5 174.5  96.0  97.9                      
REMARK 620 7 HOH C 107   O   130.1 137.0 113.5  80.8  81.0  69.5                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE3                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 198   SG                                                     
REMARK 620 2 SF4 A 401   S1  120.9                                              
REMARK 620 3 SF4 A 401   S2  110.0 103.7                                        
REMARK 620 4 SF4 A 401   S4  111.4 104.5 105.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE3                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 198   SG                                                     
REMARK 620 2 SF4 A 401   S1  106.6                                              
REMARK 620 3 SF4 A 401   S2  127.7 104.6                                        
REMARK 620 4 SF4 A 401   S4  107.3 104.4 104.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE2                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 205   SG                                                     
REMARK 620 2 SF4 A 401   S1  118.2                                              
REMARK 620 3 SF4 A 401   S3  109.1 104.2                                        
REMARK 620 4 SF4 A 401   S4  115.7 104.6 103.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE2                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 205   SG                                                     
REMARK 620 2 SF4 A 401   S1  103.0                                              
REMARK 620 3 SF4 A 401   S3  122.6 103.9                                        
REMARK 620 4 SF4 A 401   S4  116.0 104.2 104.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE1                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 208   SG                                                     
REMARK 620 2 SF4 A 401   S2  112.0                                              
REMARK 620 3 SF4 A 401   S3  118.4 104.3                                        
REMARK 620 4 SF4 A 401   S4  112.2 105.7 103.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE1                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 208   SG                                                     
REMARK 620 2 SF4 A 401   S2  140.1                                              
REMARK 620 3 SF4 A 401   S3  107.7 104.4                                        
REMARK 620 4 SF4 A 401   S4   89.7 104.8 104.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE4                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 214   SG                                                     
REMARK 620 2 SF4 A 401   S1  110.0                                              
REMARK 620 3 SF4 A 401   S2  120.7 104.1                                        
REMARK 620 4 SF4 A 401   S3  112.1 104.2 104.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             SF4 A 401  FE4                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 214   SG                                                     
REMARK 620 2 SF4 A 401   S1   81.6                                              
REMARK 620 3 SF4 A 401   S2  139.6 104.3                                        
REMARK 620 4 SF4 A 401   S3  113.6 103.9 103.7                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 404  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 259   O                                                      
REMARK 620 2 THR A 259   OG1  66.7                                              
REMARK 620 3 HOH A 638   O   151.5 140.0                                        
REMARK 620 N                    1     2                                         
DBREF  8DWD A    1   365  UNP    P83847   MUTY_GEOSE       1    365             
DBREF  8DWD B    1    11  PDB    8DWD     8DWD             1     11             
DBREF  8DWD C   12    22  PDB    8DWD     8DWD            12     22             
SEQADV 8DWD SER A   43  UNP  P83847    GLU    43 ENGINEERED MUTATION            
SEQRES   1 A  365  MET THR ARG GLU THR GLU ARG PHE PRO ALA ARG GLU PHE          
SEQRES   2 A  365  GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG GLU ARG ARG          
SEQRES   3 A  365  ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO TYR LYS VAL          
SEQRES   4 A  365  TRP VAL SER SER VAL MET LEU GLN GLN THR ARG VAL GLU          
SEQRES   5 A  365  THR VAL ILE PRO TYR PHE GLU GLN PHE ILE ASP ARG PHE          
SEQRES   6 A  365  PRO THR LEU GLU ALA LEU ALA ASP ALA ASP GLU ASP GLU          
SEQRES   7 A  365  VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR TYR SER ARG          
SEQRES   8 A  365  VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU VAL LYS THR          
SEQRES   9 A  365  ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO ASP GLU PHE          
SEQRES  10 A  365  SER ARG LEU LYS GLY VAL GLY PRO TYR THR VAL GLY ALA          
SEQRES  11 A  365  VAL LEU SER LEU ALA TYR GLY VAL PRO GLU PRO ALA VAL          
SEQRES  12 A  365  ASP GLY ASN VAL MET ARG VAL LEU SER ARG LEU PHE LEU          
SEQRES  13 A  365  VAL THR ASP ASP ILE ALA LYS PRO SER THR ARG LYS ARG          
SEQRES  14 A  365  PHE GLU GLN ILE VAL ARG GLU ILE MET ALA TYR GLU ASN          
SEQRES  15 A  365  PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU LEU GLY ALA          
SEQRES  16 A  365  LEU VAL CYS THR PRO ARG ARG PRO SER CYS LEU LEU CYS          
SEQRES  17 A  365  PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA GLU GLY VAL          
SEQRES  18 A  365  ALA GLU GLU LEU PRO VAL LYS MET LYS LYS THR ALA VAL          
SEQRES  19 A  365  LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU ALA ASP ASP          
SEQRES  20 A  365  GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SER THR GLY          
SEQRES  21 A  365  LEU LEU ALA ASN LEU TRP GLU PHE PRO SER CYS GLU THR          
SEQRES  22 A  365  ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU GLN MET VAL          
SEQRES  23 A  365  GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU THR GLU PRO          
SEQRES  24 A  365  ILE VAL SER PHE GLU HIS ALA PHE SER HIS LEU VAL TRP          
SEQRES  25 A  365  GLN LEU THR VAL PHE PRO GLY ARG LEU VAL HIS GLY GLY          
SEQRES  26 A  365  PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO GLU ASP GLU          
SEQRES  27 A  365  LEU LYS ALA TYR ALA PHE PRO VAL SER HIS GLN ARG VAL          
SEQRES  28 A  365  TRP ARG GLU TYR LYS GLU TRP ALA SER GLY VAL ARG ARG          
SEQRES  29 A  365  PRO                                                          
SEQRES   1 B   11   DA  DA  DG  DA  DC 8OG  DT  DG  DG  DA  DC                  
SEQRES   1 C   11   DT  DG  DT  DC  DC  DA ORP  DG  DT  DC  DT                  
HET    8OG  B   6      34                                                       
HET    ORP  C  18      20                                                       
HET    SF4  A 401      16                                                       
HET    ACT  A 402       7                                                       
HET     CA  A 403       1                                                       
HET     CA  A 404       1                                                       
HETNAM     8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE                        
HETNAM     ORP 2-DEOXY-5-PHOSPHONO-RIBOSE                                       
HETNAM     SF4 IRON/SULFUR CLUSTER                                              
HETNAM     ACT ACETATE ION                                                      
HETNAM      CA CALCIUM ION                                                      
HETSYN     8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE            
FORMUL   2  8OG    C10 H14 N5 O8 P                                              
FORMUL   3  ORP    C5 H11 O7 P                                                  
FORMUL   4  SF4    FE4 S4                                                       
FORMUL   5  ACT    C2 H3 O2 1-                                                  
FORMUL   6   CA    2(CA 2+)                                                     
FORMUL   8  HOH   *214(H2 O)                                                    
HELIX    1 AA1 PRO A    9  ARG A   25  1                                  17    
HELIX    2 AA2 LEU A   28  LYS A   32  5                                   5    
HELIX    3 AA3 ASP A   35  LEU A   46  1                                  12    
HELIX    4 AA4 ARG A   50  PHE A   65  1                                  16    
HELIX    5 AA5 THR A   67  ASP A   73  1                                   7    
HELIX    6 AA6 ASP A   75  GLU A   84  1                                  10    
HELIX    7 AA7 TYR A   89  ARG A  105  1                                  17    
HELIX    8 AA8 ASP A  113  ARG A  119  1                                   7    
HELIX    9 AA9 GLY A  124  TYR A  136  1                                  13    
HELIX   10 AB1 ASP A  144  PHE A  155  1                                  12    
HELIX   11 AB2 LYS A  163  MET A  178  1                                  16    
HELIX   12 AB3 ASN A  182  VAL A  197  1                                  16    
HELIX   13 AB4 VAL A  210  TYR A  213  5                                   4    
HELIX   14 AB5 CYS A  214  GLY A  220  1                                   7    
HELIX   15 AB6 VAL A  221  LEU A  225  5                                   5    
HELIX   16 AB7 GLY A  278  GLU A  288  1                                  11    
HELIX   17 AB8 ASP A  337  TYR A  342  5                                   6    
HELIX   18 AB9 PRO A  345  SER A  360  1                                  16    
SHEET    1 AA1 4 SER A 270  GLU A 272  0                                        
SHEET    2 AA1 4 LYS A 235  ALA A 245 -1  N  ALA A 240   O  CYS A 271           
SHEET    3 AA1 4 LEU A 310  ARG A 320  1  O  PHE A 317   N  VAL A 241           
SHEET    4 AA1 4 GLU A 295  LEU A 296 -1  N  GLU A 295   O  ARG A 320           
SHEET    1 AA2 4 SER A 270  GLU A 272  0                                        
SHEET    2 AA2 4 LYS A 235  ALA A 245 -1  N  ALA A 240   O  CYS A 271           
SHEET    3 AA2 4 LEU A 310  ARG A 320  1  O  PHE A 317   N  VAL A 241           
SHEET    4 AA2 4 VAL A 301  ALA A 306 -1  N  PHE A 303   O  LEU A 314           
SHEET    1 AA3 3 TRP A 266  GLU A 267  0                                        
SHEET    2 AA3 3 ARG A 250  LYS A 255 -1  N  ARG A 254   O  GLU A 267           
SHEET    3 AA3 3 TYR A 331  PRO A 335 -1  O  ALA A 334   N  VAL A 251           
LINK         O3'  DC B   5                 P   8OG B   6     1555   1555  1.60  
LINK         O3' 8OG B   6                 P    DT B   7     1555   1555  1.60  
LINK         O3'  DA C  17                 P   ORP C  18     1555   1555  1.60  
LINK         O3  ORP C  18                 P    DG C  19     1555   1555  1.59  
LINK         O   SER A 118                CA    CA A 403     1555   1555  2.43  
LINK         OG  SER A 118                CA    CA A 403     1555   1555  2.25  
LINK         O   VAL A 123                CA    CA A 403     1555   1555  2.26  
LINK         SG ACYS A 198                FE3 ASF4 A 401     1555   1555  2.25  
LINK         SG BCYS A 198                FE3 BSF4 A 401     1555   1555  2.29  
LINK         SG ACYS A 205                FE2 ASF4 A 401     1555   1555  2.28  
LINK         SG BCYS A 205                FE2 BSF4 A 401     1555   1555  2.27  
LINK         SG ACYS A 208                FE1 ASF4 A 401     1555   1555  2.31  
LINK         SG BCYS A 208                FE1 BSF4 A 401     1555   1555  2.19  
LINK         SG ACYS A 214                FE4 ASF4 A 401     1555   1555  2.30  
LINK         SG BCYS A 214                FE4 BSF4 A 401     1555   1555  2.26  
LINK         O   THR A 259                CA    CA A 404     1555   1555  2.23  
LINK         OG1 THR A 259                CA    CA A 404     1555   1555  2.59  
LINK        CA    CA A 403                 O   HOH A 521     1555   1555  2.69  
LINK        CA    CA A 403                 O   HOH A 524     1555   1555  2.02  
LINK        CA    CA A 403                 O   HOH A 618     1555   1555  2.52  
LINK        CA    CA A 403                 O   HOH C 107     1555   1555  2.32  
LINK        CA    CA A 404                 O   HOH A 638     1555   1555  2.73  
CISPEP   1 LEU A  225    PRO A  226          0        -0.99                     
CISPEP   2 GLU A  329    PRO A  330          0         4.78                     
CRYST1   37.740   85.920  140.690  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.026497  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.011639  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007108        0.00000