data_8DWJ # _entry.id 8DWJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DWJ pdb_00008dwj 10.2210/pdb8dwj/pdb WWPDB D_1000267477 ? ? EMDB EMD-27756 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'wild type helicase region in primosome' 8DTP unspecified PDB 'wild type helicase in different conformation' 8DUE unspecified PDB 'DNA-free helicase hexamer' 8DUO unspecified PDB 'wild type primosome conformation I' 8DVF unspecified PDB 'wild type primosome conformation II' 8DVI unspecified PDB 'wild type primosome conformation III' 8DW6 unspecified EMDB 'primase of mutant bacteriophage T4 primosome with single strand DNA/RNA primer hybrid in primer exiting state' EMD-27756 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DWJ _pdbx_database_status.recvd_initial_deposition_date 2022-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Feng, X.' 1 0000-0002-4441-3152 'Li, H.' 2 0000-0001-8085-8928 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nat Commun' ? ? 2041-1723 ? ? 14 ? 4396 4396 'Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.' 2023 ? 10.1038/s41467-023-40106-2 37474605 ? ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.' 2023 ? 10.1101/2023.05.03.539249 37205424 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, X.' 1 0000-0002-4441-3152 primary 'Spiering, M.M.' 2 0000-0002-6222-980X primary 'de Luna Almeida Santos, R.' 3 ? primary 'Benkovic, S.J.' 4 0000-0003-3680-3481 primary 'Li, H.' 5 0000-0001-8085-8928 1 'Feng, X.' 6 ? 1 'Spiering, M.M.' 7 ? 1 'de Luna Almeida Santos, R.' 8 ? 1 'Benkovic, S.J.' 9 ? 1 'Li, H.' 10 0000-0001-8085-8928 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8DWJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "RNA(5'-ppp-GCCGA-3')" 1744.983 1 ? ? ? ? 2 polymer syn 'DNA (70-MER)' 21900.025 1 ? ? ? ? 3 polymer man 'DNA primase' 39842.043 1 2.7.7.- ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'DNA priming protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)CCGA' GCCGA P ? 2 polydeoxyribonucleotide no no ;(DG)(DA)(DA)(DT)(DG)(DA)(DG)(DG)(DA)(DG)(DT)(DA)(DG)(DT)(DA)(DG)(DT)(DG)(DA)(DA) (DT)(DG)(DT)(DA)(DG)(DT)(DG)(DA)(DG)(DG)(DT)(DA)(DA)(DT)(DA)(DT)(DC)(DG)(DG)(DC) (DT)(DG)(DG)(DT)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DG)(DT)(DG)(DC)(DC)(DA)(DA)(DG)(DT) (DT)(DG)(DC)(DT)(DG)(DC)(DA)(DA)(DA)(DA) ; GAATGAGGAGTAGTAGTGAATGTAGTGAGGTAATATCGGCTGGTCTGGTCTGTGCCAAGTTGCTGCAAAA T ? 3 'polypeptide(L)' no no ;MSSIPWIDNEFAYRALAHLPKFTQVNNSSTFKLRFRCPVCGDSKTDQNKARGWYYGDNNEGNIHCYNCNYHAPIGIYLKE FEPDLYREYIFEIRKEKGKSRPIEKPKELPKQPEKKIIKSLPSCVRLDKLAEDHPIIKYVKARCIPKDKWKYLWFTTEWP KLVNSIAPGTYKKEISEPRLVIPIYNANGKAESFQGRALKKDAPQKYITIEAYPEATKIYGVERVKDGDVYVLEGPIDSL FIENGIAITGGQLDLEVVPFKDRRVWVLDNEPRHPDTIKRMTKLVDAGERVMFWDKSPWKSKDVNDMIRKEGATPEQIME YMKNNIAQGLMAKMRLSKYAKI ; ;MSSIPWIDNEFAYRALAHLPKFTQVNNSSTFKLRFRCPVCGDSKTDQNKARGWYYGDNNEGNIHCYNCNYHAPIGIYLKE FEPDLYREYIFEIRKEKGKSRPIEKPKELPKQPEKKIIKSLPSCVRLDKLAEDHPIIKYVKARCIPKDKWKYLWFTTEWP KLVNSIAPGTYKKEISEPRLVIPIYNANGKAESFQGRALKKDAPQKYITIEAYPEATKIYGVERVKDGDVYVLEGPIDSL FIENGIAITGGQLDLEVVPFKDRRVWVLDNEPRHPDTIKRMTKLVDAGERVMFWDKSPWKSKDVNDMIRKEGATPEQIME YMKNNIAQGLMAKMRLSKYAKI ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 C n 1 3 C n 1 4 G n 1 5 A n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DG n 2 11 DT n 2 12 DA n 2 13 DG n 2 14 DT n 2 15 DA n 2 16 DG n 2 17 DT n 2 18 DG n 2 19 DA n 2 20 DA n 2 21 DT n 2 22 DG n 2 23 DT n 2 24 DA n 2 25 DG n 2 26 DT n 2 27 DG n 2 28 DA n 2 29 DG n 2 30 DG n 2 31 DT n 2 32 DA n 2 33 DA n 2 34 DT n 2 35 DA n 2 36 DT n 2 37 DC n 2 38 DG n 2 39 DG n 2 40 DC n 2 41 DT n 2 42 DG n 2 43 DG n 2 44 DT n 2 45 DC n 2 46 DT n 2 47 DG n 2 48 DG n 2 49 DT n 2 50 DC n 2 51 DT n 2 52 DG n 2 53 DT n 2 54 DG n 2 55 DC n 2 56 DC n 2 57 DA n 2 58 DA n 2 59 DG n 2 60 DT n 2 61 DT n 2 62 DG n 2 63 DC n 2 64 DT n 2 65 DG n 2 66 DC n 2 67 DA n 2 68 DA n 2 69 DA n 2 70 DA n 3 1 MET n 3 2 SER n 3 3 SER n 3 4 ILE n 3 5 PRO n 3 6 TRP n 3 7 ILE n 3 8 ASP n 3 9 ASN n 3 10 GLU n 3 11 PHE n 3 12 ALA n 3 13 TYR n 3 14 ARG n 3 15 ALA n 3 16 LEU n 3 17 ALA n 3 18 HIS n 3 19 LEU n 3 20 PRO n 3 21 LYS n 3 22 PHE n 3 23 THR n 3 24 GLN n 3 25 VAL n 3 26 ASN n 3 27 ASN n 3 28 SER n 3 29 SER n 3 30 THR n 3 31 PHE n 3 32 LYS n 3 33 LEU n 3 34 ARG n 3 35 PHE n 3 36 ARG n 3 37 CYS n 3 38 PRO n 3 39 VAL n 3 40 CYS n 3 41 GLY n 3 42 ASP n 3 43 SER n 3 44 LYS n 3 45 THR n 3 46 ASP n 3 47 GLN n 3 48 ASN n 3 49 LYS n 3 50 ALA n 3 51 ARG n 3 52 GLY n 3 53 TRP n 3 54 TYR n 3 55 TYR n 3 56 GLY n 3 57 ASP n 3 58 ASN n 3 59 ASN n 3 60 GLU n 3 61 GLY n 3 62 ASN n 3 63 ILE n 3 64 HIS n 3 65 CYS n 3 66 TYR n 3 67 ASN n 3 68 CYS n 3 69 ASN n 3 70 TYR n 3 71 HIS n 3 72 ALA n 3 73 PRO n 3 74 ILE n 3 75 GLY n 3 76 ILE n 3 77 TYR n 3 78 LEU n 3 79 LYS n 3 80 GLU n 3 81 PHE n 3 82 GLU n 3 83 PRO n 3 84 ASP n 3 85 LEU n 3 86 TYR n 3 87 ARG n 3 88 GLU n 3 89 TYR n 3 90 ILE n 3 91 PHE n 3 92 GLU n 3 93 ILE n 3 94 ARG n 3 95 LYS n 3 96 GLU n 3 97 LYS n 3 98 GLY n 3 99 LYS n 3 100 SER n 3 101 ARG n 3 102 PRO n 3 103 ILE n 3 104 GLU n 3 105 LYS n 3 106 PRO n 3 107 LYS n 3 108 GLU n 3 109 LEU n 3 110 PRO n 3 111 LYS n 3 112 GLN n 3 113 PRO n 3 114 GLU n 3 115 LYS n 3 116 LYS n 3 117 ILE n 3 118 ILE n 3 119 LYS n 3 120 SER n 3 121 LEU n 3 122 PRO n 3 123 SER n 3 124 CYS n 3 125 VAL n 3 126 ARG n 3 127 LEU n 3 128 ASP n 3 129 LYS n 3 130 LEU n 3 131 ALA n 3 132 GLU n 3 133 ASP n 3 134 HIS n 3 135 PRO n 3 136 ILE n 3 137 ILE n 3 138 LYS n 3 139 TYR n 3 140 VAL n 3 141 LYS n 3 142 ALA n 3 143 ARG n 3 144 CYS n 3 145 ILE n 3 146 PRO n 3 147 LYS n 3 148 ASP n 3 149 LYS n 3 150 TRP n 3 151 LYS n 3 152 TYR n 3 153 LEU n 3 154 TRP n 3 155 PHE n 3 156 THR n 3 157 THR n 3 158 GLU n 3 159 TRP n 3 160 PRO n 3 161 LYS n 3 162 LEU n 3 163 VAL n 3 164 ASN n 3 165 SER n 3 166 ILE n 3 167 ALA n 3 168 PRO n 3 169 GLY n 3 170 THR n 3 171 TYR n 3 172 LYS n 3 173 LYS n 3 174 GLU n 3 175 ILE n 3 176 SER n 3 177 GLU n 3 178 PRO n 3 179 ARG n 3 180 LEU n 3 181 VAL n 3 182 ILE n 3 183 PRO n 3 184 ILE n 3 185 TYR n 3 186 ASN n 3 187 ALA n 3 188 ASN n 3 189 GLY n 3 190 LYS n 3 191 ALA n 3 192 GLU n 3 193 SER n 3 194 PHE n 3 195 GLN n 3 196 GLY n 3 197 ARG n 3 198 ALA n 3 199 LEU n 3 200 LYS n 3 201 LYS n 3 202 ASP n 3 203 ALA n 3 204 PRO n 3 205 GLN n 3 206 LYS n 3 207 TYR n 3 208 ILE n 3 209 THR n 3 210 ILE n 3 211 GLU n 3 212 ALA n 3 213 TYR n 3 214 PRO n 3 215 GLU n 3 216 ALA n 3 217 THR n 3 218 LYS n 3 219 ILE n 3 220 TYR n 3 221 GLY n 3 222 VAL n 3 223 GLU n 3 224 ARG n 3 225 VAL n 3 226 LYS n 3 227 ASP n 3 228 GLY n 3 229 ASP n 3 230 VAL n 3 231 TYR n 3 232 VAL n 3 233 LEU n 3 234 GLU n 3 235 GLY n 3 236 PRO n 3 237 ILE n 3 238 ASP n 3 239 SER n 3 240 LEU n 3 241 PHE n 3 242 ILE n 3 243 GLU n 3 244 ASN n 3 245 GLY n 3 246 ILE n 3 247 ALA n 3 248 ILE n 3 249 THR n 3 250 GLY n 3 251 GLY n 3 252 GLN n 3 253 LEU n 3 254 ASP n 3 255 LEU n 3 256 GLU n 3 257 VAL n 3 258 VAL n 3 259 PRO n 3 260 PHE n 3 261 LYS n 3 262 ASP n 3 263 ARG n 3 264 ARG n 3 265 VAL n 3 266 TRP n 3 267 VAL n 3 268 LEU n 3 269 ASP n 3 270 ASN n 3 271 GLU n 3 272 PRO n 3 273 ARG n 3 274 HIS n 3 275 PRO n 3 276 ASP n 3 277 THR n 3 278 ILE n 3 279 LYS n 3 280 ARG n 3 281 MET n 3 282 THR n 3 283 LYS n 3 284 LEU n 3 285 VAL n 3 286 ASP n 3 287 ALA n 3 288 GLY n 3 289 GLU n 3 290 ARG n 3 291 VAL n 3 292 MET n 3 293 PHE n 3 294 TRP n 3 295 ASP n 3 296 LYS n 3 297 SER n 3 298 PRO n 3 299 TRP n 3 300 LYS n 3 301 SER n 3 302 LYS n 3 303 ASP n 3 304 VAL n 3 305 ASN n 3 306 ASP n 3 307 MET n 3 308 ILE n 3 309 ARG n 3 310 LYS n 3 311 GLU n 3 312 GLY n 3 313 ALA n 3 314 THR n 3 315 PRO n 3 316 GLU n 3 317 GLN n 3 318 ILE n 3 319 MET n 3 320 GLU n 3 321 TYR n 3 322 MET n 3 323 LYS n 3 324 ASN n 3 325 ASN n 3 326 ILE n 3 327 ALA n 3 328 GLN n 3 329 GLY n 3 330 LEU n 3 331 MET n 3 332 ALA n 3 333 LYS n 3 334 MET n 3 335 ARG n 3 336 LEU n 3 337 SER n 3 338 LYS n 3 339 TYR n 3 340 ALA n 3 341 LYS n 3 342 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 342 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene '61, 58' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia phage T4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2681598 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 5 'Escherichia phage T4' ? 2681598 ? 2 1 sample 1 70 'Escherichia phage T4' ? 2681598 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8DWJ 8DWJ ? 1 ? 1 2 PDB 8DWJ 8DWJ ? 2 ? 1 3 UNP PRIM_BPT4 P04520 ? 3 ;MSSIPWIDNEFAYRALAHLPKFTQVNNSSTFKLRFRCPVCGDSKTDQNKARGWYYGDNNEGNIHCYNCNYHAPIGIYLKE FEPDLYREYIFEIRKEKGKSRPIEKPKELPKQPEKKIIKSLPSCVRLDKLAEDHPIIKYVKARCIPKDKWKYLWFTTEWP KLVNSIAPGTYKKEISEPRLVIPIYNANGKAESFQGRALKKDAPQKYITIEAYPEATKIYGVERVKDGDVYVLEGPIDSL FIENGIAITGGQLDLEVVPFKDRRVWVLDNEPRHPDTIKRMTKLVDAGERVMFWDKSPWKSKDVNDMIRKEGATPEQIME YMKNNIAQGLMAKMRLSKYAKI ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DWJ P 1 ? 5 ? 8DWJ 1 ? 5 ? 1 5 2 2 8DWJ T 1 ? 70 ? 8DWJ -34 ? 35 ? -34 35 3 3 8DWJ A 1 ? 342 ? P04520 1 ? 342 ? 1 342 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DWJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8DWJ _struct.title 'Primase of mutant bacteriophage T4 primosome with single strand DNA/RNA primer hybrid in primer exiting state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DWJ _struct_keywords.text 'phage, complex, helicase, REPLICATION-DNA-RNA complex' _struct_keywords.pdbx_keywords REPLICATION/DNA/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE C 4 ? ALA C 17 ? ILE A 4 ALA A 17 1 ? 14 HELX_P HELX_P2 AA2 ILE C 74 ? GLU C 82 ? ILE A 74 GLU A 82 1 ? 9 HELX_P HELX_P3 AA3 GLU C 82 ? LYS C 97 ? GLU A 82 LYS A 97 1 ? 16 HELX_P HELX_P4 AA4 ASP C 128 ? LEU C 130 ? ASP A 128 LEU A 130 5 ? 3 HELX_P HELX_P5 AA5 HIS C 134 ? ARG C 143 ? HIS A 134 ARG A 143 1 ? 10 HELX_P HELX_P6 AA6 PRO C 146 ? TYR C 152 ? PRO A 146 TYR A 152 5 ? 7 HELX_P HELX_P7 AA7 GLU C 158 ? ALA C 167 ? GLU A 158 ALA A 167 1 ? 10 HELX_P HELX_P8 AA8 GLY C 221 ? VAL C 225 ? GLY A 221 VAL A 225 5 ? 5 HELX_P HELX_P9 AA9 GLY C 235 ? LEU C 240 ? GLY A 235 LEU A 240 1 ? 6 HELX_P HELX_P10 AB1 HIS C 274 ? ALA C 287 ? HIS A 274 ALA A 287 1 ? 14 HELX_P HELX_P11 AB2 TRP C 294 ? SER C 297 ? TRP A 294 SER A 297 5 ? 4 HELX_P HELX_P12 AB3 ASP C 303 ? GLY C 312 ? ASP A 303 GLY A 312 1 ? 10 HELX_P HELX_P13 AB4 THR C 314 ? ASN C 324 ? THR A 314 ASN A 324 1 ? 11 HELX_P HELX_P14 AB5 GLY C 329 ? LYS C 341 ? GLY A 329 LYS A 341 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A C 2 P ? ? P GTP 1 P C 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? C CYS 37 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 37 A ZN 401 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc2 metalc ? ? C CYS 40 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 40 A ZN 401 1_555 ? ? ? ? ? ? ? 2.476 ? ? metalc3 metalc ? ? C CYS 65 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 65 A ZN 401 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc4 metalc ? ? C CYS 68 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 68 A ZN 401 1_555 ? ? ? ? ? ? ? 2.512 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 B DC 40 N3 ? ? P GTP 1 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 B DC 40 O2 ? ? P GTP 1 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 B DC 40 N4 ? ? P GTP 1 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B DG 39 N1 ? ? P C 2 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B DG 39 O6 ? ? P C 2 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B DG 39 N2 ? ? P C 2 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B DG 38 N1 ? ? P C 3 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B DG 38 O6 ? ? P C 3 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B DG 38 N2 ? ? P C 3 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 37 N3 ? ? P G 4 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 37 O2 ? ? P G 4 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 37 N4 ? ? P G 4 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 B DT 36 N3 ? ? P A 5 T DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 B DT 36 O4 ? ? P A 5 T DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR C 23 ? ASN C 27 ? THR A 23 ASN A 27 AA1 2 THR C 30 ? PHE C 35 ? THR A 30 PHE A 35 AA1 3 GLY C 52 ? TYR C 55 ? GLY A 52 TYR A 55 AA1 4 ASN C 62 ? CYS C 65 ? ASN A 62 CYS A 65 AA1 5 TYR C 70 ? PRO C 73 ? TYR A 70 PRO A 73 AA2 1 CYS C 124 ? ARG C 126 ? CYS A 124 ARG A 126 AA2 2 TRP C 154 ? THR C 156 ? TRP A 154 THR A 156 AA2 3 ARG C 179 ? TYR C 185 ? ARG A 179 TYR A 185 AA2 4 ALA C 191 ? ALA C 198 ? ALA A 191 ALA A 198 AA2 5 THR C 209 ? GLU C 211 ? THR A 209 GLU A 211 AA3 1 ILE C 219 ? TYR C 220 ? ILE A 219 TYR A 220 AA3 2 GLY C 245 ? ILE C 248 ? GLY A 245 ILE A 248 AA3 3 VAL C 230 ? LEU C 233 ? VAL A 230 LEU A 233 AA3 4 ARG C 264 ? TRP C 266 ? ARG A 264 TRP A 266 AA4 1 VAL C 291 ? MET C 292 ? VAL A 291 MET A 292 AA4 2 ILE C 326 ? ALA C 327 ? ILE A 326 ALA A 327 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR C 23 ? N THR A 23 O ARG C 34 ? O ARG A 34 AA1 2 3 N PHE C 35 ? N PHE A 35 O GLY C 52 ? O GLY A 52 AA1 3 4 N TYR C 55 ? N TYR A 55 O ASN C 62 ? O ASN A 62 AA1 4 5 N ILE C 63 ? N ILE A 63 O ALA C 72 ? O ALA A 72 AA2 1 2 N VAL C 125 ? N VAL A 125 O PHE C 155 ? O PHE A 155 AA2 2 3 N TRP C 154 ? N TRP A 154 O VAL C 181 ? O VAL A 181 AA2 3 4 N LEU C 180 ? N LEU A 180 O ARG C 197 ? O ARG A 197 AA2 4 5 N PHE C 194 ? N PHE A 194 O ILE C 210 ? O ILE A 210 AA3 1 2 N TYR C 220 ? N TYR A 220 O ALA C 247 ? O ALA A 247 AA3 2 3 O ILE C 246 ? O ILE A 246 N LEU C 233 ? N LEU A 233 AA3 3 4 N VAL C 232 ? N VAL A 232 O VAL C 265 ? O VAL A 265 AA4 1 2 N VAL C 291 ? N VAL A 291 O ALA C 327 ? O ALA A 327 # _atom_sites.entry_id 8DWJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP P . n A 1 2 C 2 2 2 C C P . n A 1 3 C 3 3 3 C C P . n A 1 4 G 4 4 4 G G P . n A 1 5 A 5 5 5 A A P . n B 2 1 DG 1 -34 ? ? ? T . n B 2 2 DA 2 -33 ? ? ? T . n B 2 3 DA 3 -32 ? ? ? T . n B 2 4 DT 4 -31 ? ? ? T . n B 2 5 DG 5 -30 ? ? ? T . n B 2 6 DA 6 -29 ? ? ? T . n B 2 7 DG 7 -28 ? ? ? T . n B 2 8 DG 8 -27 ? ? ? T . n B 2 9 DA 9 -26 ? ? ? T . n B 2 10 DG 10 -25 ? ? ? T . n B 2 11 DT 11 -24 ? ? ? T . n B 2 12 DA 12 -23 ? ? ? T . n B 2 13 DG 13 -22 ? ? ? T . n B 2 14 DT 14 -21 ? ? ? T . n B 2 15 DA 15 -20 ? ? ? T . n B 2 16 DG 16 -19 ? ? ? T . n B 2 17 DT 17 -18 ? ? ? T . n B 2 18 DG 18 -17 ? ? ? T . n B 2 19 DA 19 -16 ? ? ? T . n B 2 20 DA 20 -15 ? ? ? T . n B 2 21 DT 21 -14 ? ? ? T . n B 2 22 DG 22 -13 ? ? ? T . n B 2 23 DT 23 -12 ? ? ? T . n B 2 24 DA 24 -11 ? ? ? T . n B 2 25 DG 25 -10 ? ? ? T . n B 2 26 DT 26 -9 ? ? ? T . n B 2 27 DG 27 -8 ? ? ? T . n B 2 28 DA 28 -7 ? ? ? T . n B 2 29 DG 29 -6 ? ? ? T . n B 2 30 DG 30 -5 ? ? ? T . n B 2 31 DT 31 -4 ? ? ? T . n B 2 32 DA 32 -3 ? ? ? T . n B 2 33 DA 33 -2 ? ? ? T . n B 2 34 DT 34 -1 ? ? ? T . n B 2 35 DA 35 0 ? ? ? T . n B 2 36 DT 36 1 1 DT DT T . n B 2 37 DC 37 2 2 DC DC T . n B 2 38 DG 38 3 3 DG DG T . n B 2 39 DG 39 4 4 DG DG T . n B 2 40 DC 40 5 5 DC DC T . n B 2 41 DT 41 6 6 DT DT T . n B 2 42 DG 42 7 7 DG DG T . n B 2 43 DG 43 8 ? ? ? T . n B 2 44 DT 44 9 ? ? ? T . n B 2 45 DC 45 10 ? ? ? T . n B 2 46 DT 46 11 ? ? ? T . n B 2 47 DG 47 12 ? ? ? T . n B 2 48 DG 48 13 ? ? ? T . n B 2 49 DT 49 14 ? ? ? T . n B 2 50 DC 50 15 ? ? ? T . n B 2 51 DT 51 16 ? ? ? T . n B 2 52 DG 52 17 ? ? ? T . n B 2 53 DT 53 18 ? ? ? T . n B 2 54 DG 54 19 ? ? ? T . n B 2 55 DC 55 20 ? ? ? T . n B 2 56 DC 56 21 ? ? ? T . n B 2 57 DA 57 22 ? ? ? T . n B 2 58 DA 58 23 ? ? ? T . n B 2 59 DG 59 24 ? ? ? T . n B 2 60 DT 60 25 ? ? ? T . n B 2 61 DT 61 26 ? ? ? T . n B 2 62 DG 62 27 ? ? ? T . n B 2 63 DC 63 28 ? ? ? T . n B 2 64 DT 64 29 ? ? ? T . n B 2 65 DG 65 30 ? ? ? T . n B 2 66 DC 66 31 ? ? ? T . n B 2 67 DA 67 32 ? ? ? T . n B 2 68 DA 68 33 ? ? ? T . n B 2 69 DA 69 34 ? ? ? T . n B 2 70 DA 70 35 ? ? ? T . n C 3 1 MET 1 1 ? ? ? A . n C 3 2 SER 2 2 ? ? ? A . n C 3 3 SER 3 3 3 SER SER A . n C 3 4 ILE 4 4 4 ILE ILE A . n C 3 5 PRO 5 5 5 PRO PRO A . n C 3 6 TRP 6 6 6 TRP TRP A . n C 3 7 ILE 7 7 7 ILE ILE A . n C 3 8 ASP 8 8 8 ASP ASP A . n C 3 9 ASN 9 9 9 ASN ASN A . n C 3 10 GLU 10 10 10 GLU GLU A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 ALA 12 12 12 ALA ALA A . n C 3 13 TYR 13 13 13 TYR TYR A . n C 3 14 ARG 14 14 14 ARG ARG A . n C 3 15 ALA 15 15 15 ALA ALA A . n C 3 16 LEU 16 16 16 LEU LEU A . n C 3 17 ALA 17 17 17 ALA ALA A . n C 3 18 HIS 18 18 18 HIS HIS A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 PRO 20 20 20 PRO PRO A . n C 3 21 LYS 21 21 21 LYS LYS A . n C 3 22 PHE 22 22 22 PHE PHE A . n C 3 23 THR 23 23 23 THR THR A . n C 3 24 GLN 24 24 24 GLN GLN A . n C 3 25 VAL 25 25 25 VAL VAL A . n C 3 26 ASN 26 26 26 ASN ASN A . n C 3 27 ASN 27 27 27 ASN ASN A . n C 3 28 SER 28 28 28 SER SER A . n C 3 29 SER 29 29 29 SER SER A . n C 3 30 THR 30 30 30 THR THR A . n C 3 31 PHE 31 31 31 PHE PHE A . n C 3 32 LYS 32 32 32 LYS LYS A . n C 3 33 LEU 33 33 33 LEU LEU A . n C 3 34 ARG 34 34 34 ARG ARG A . n C 3 35 PHE 35 35 35 PHE PHE A . n C 3 36 ARG 36 36 36 ARG ARG A . n C 3 37 CYS 37 37 37 CYS CYS A . n C 3 38 PRO 38 38 38 PRO PRO A . n C 3 39 VAL 39 39 39 VAL VAL A . n C 3 40 CYS 40 40 40 CYS CYS A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ASP 42 42 42 ASP ASP A . n C 3 43 SER 43 43 43 SER SER A . n C 3 44 LYS 44 44 44 LYS LYS A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ASP 46 46 46 ASP ASP A . n C 3 47 GLN 47 47 47 GLN GLN A . n C 3 48 ASN 48 48 48 ASN ASN A . n C 3 49 LYS 49 49 49 LYS LYS A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 GLY 52 52 52 GLY GLY A . n C 3 53 TRP 53 53 53 TRP TRP A . n C 3 54 TYR 54 54 54 TYR TYR A . n C 3 55 TYR 55 55 55 TYR TYR A . n C 3 56 GLY 56 56 56 GLY GLY A . n C 3 57 ASP 57 57 57 ASP ASP A . n C 3 58 ASN 58 58 58 ASN ASN A . n C 3 59 ASN 59 59 59 ASN ASN A . n C 3 60 GLU 60 60 60 GLU GLU A . n C 3 61 GLY 61 61 61 GLY GLY A . n C 3 62 ASN 62 62 62 ASN ASN A . n C 3 63 ILE 63 63 63 ILE ILE A . n C 3 64 HIS 64 64 64 HIS HIS A . n C 3 65 CYS 65 65 65 CYS CYS A . n C 3 66 TYR 66 66 66 TYR TYR A . n C 3 67 ASN 67 67 67 ASN ASN A . n C 3 68 CYS 68 68 68 CYS CYS A . n C 3 69 ASN 69 69 69 ASN ASN A . n C 3 70 TYR 70 70 70 TYR TYR A . n C 3 71 HIS 71 71 71 HIS HIS A . n C 3 72 ALA 72 72 72 ALA ALA A . n C 3 73 PRO 73 73 73 PRO PRO A . n C 3 74 ILE 74 74 74 ILE ILE A . n C 3 75 GLY 75 75 75 GLY GLY A . n C 3 76 ILE 76 76 76 ILE ILE A . n C 3 77 TYR 77 77 77 TYR TYR A . n C 3 78 LEU 78 78 78 LEU LEU A . n C 3 79 LYS 79 79 79 LYS LYS A . n C 3 80 GLU 80 80 80 GLU GLU A . n C 3 81 PHE 81 81 81 PHE PHE A . n C 3 82 GLU 82 82 82 GLU GLU A . n C 3 83 PRO 83 83 83 PRO PRO A . n C 3 84 ASP 84 84 84 ASP ASP A . n C 3 85 LEU 85 85 85 LEU LEU A . n C 3 86 TYR 86 86 86 TYR TYR A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 GLU 88 88 88 GLU GLU A . n C 3 89 TYR 89 89 89 TYR TYR A . n C 3 90 ILE 90 90 90 ILE ILE A . n C 3 91 PHE 91 91 91 PHE PHE A . n C 3 92 GLU 92 92 92 GLU GLU A . n C 3 93 ILE 93 93 93 ILE ILE A . n C 3 94 ARG 94 94 94 ARG ARG A . n C 3 95 LYS 95 95 95 LYS LYS A . n C 3 96 GLU 96 96 96 GLU GLU A . n C 3 97 LYS 97 97 97 LYS LYS A . n C 3 98 GLY 98 98 98 GLY GLY A . n C 3 99 LYS 99 99 99 LYS LYS A . n C 3 100 SER 100 100 100 SER SER A . n C 3 101 ARG 101 101 101 ARG ARG A . n C 3 102 PRO 102 102 102 PRO PRO A . n C 3 103 ILE 103 103 103 ILE ILE A . n C 3 104 GLU 104 104 104 GLU GLU A . n C 3 105 LYS 105 105 105 LYS LYS A . n C 3 106 PRO 106 106 106 PRO PRO A . n C 3 107 LYS 107 107 107 LYS LYS A . n C 3 108 GLU 108 108 108 GLU GLU A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 PRO 110 110 110 PRO PRO A . n C 3 111 LYS 111 111 111 LYS LYS A . n C 3 112 GLN 112 112 112 GLN GLN A . n C 3 113 PRO 113 113 113 PRO PRO A . n C 3 114 GLU 114 114 114 GLU GLU A . n C 3 115 LYS 115 115 115 LYS LYS A . n C 3 116 LYS 116 116 116 LYS LYS A . n C 3 117 ILE 117 117 117 ILE ILE A . n C 3 118 ILE 118 118 118 ILE ILE A . n C 3 119 LYS 119 119 119 LYS LYS A . n C 3 120 SER 120 120 120 SER SER A . n C 3 121 LEU 121 121 121 LEU LEU A . n C 3 122 PRO 122 122 122 PRO PRO A . n C 3 123 SER 123 123 123 SER SER A . n C 3 124 CYS 124 124 124 CYS CYS A . n C 3 125 VAL 125 125 125 VAL VAL A . n C 3 126 ARG 126 126 126 ARG ARG A . n C 3 127 LEU 127 127 127 LEU LEU A . n C 3 128 ASP 128 128 128 ASP ASP A . n C 3 129 LYS 129 129 129 LYS LYS A . n C 3 130 LEU 130 130 130 LEU LEU A . n C 3 131 ALA 131 131 131 ALA ALA A . n C 3 132 GLU 132 132 132 GLU GLU A . n C 3 133 ASP 133 133 133 ASP ASP A . n C 3 134 HIS 134 134 134 HIS HIS A . n C 3 135 PRO 135 135 135 PRO PRO A . n C 3 136 ILE 136 136 136 ILE ILE A . n C 3 137 ILE 137 137 137 ILE ILE A . n C 3 138 LYS 138 138 138 LYS LYS A . n C 3 139 TYR 139 139 139 TYR TYR A . n C 3 140 VAL 140 140 140 VAL VAL A . n C 3 141 LYS 141 141 141 LYS LYS A . n C 3 142 ALA 142 142 142 ALA ALA A . n C 3 143 ARG 143 143 143 ARG ARG A . n C 3 144 CYS 144 144 144 CYS CYS A . n C 3 145 ILE 145 145 145 ILE ILE A . n C 3 146 PRO 146 146 146 PRO PRO A . n C 3 147 LYS 147 147 147 LYS LYS A . n C 3 148 ASP 148 148 148 ASP ASP A . n C 3 149 LYS 149 149 149 LYS LYS A . n C 3 150 TRP 150 150 150 TRP TRP A . n C 3 151 LYS 151 151 151 LYS LYS A . n C 3 152 TYR 152 152 152 TYR TYR A . n C 3 153 LEU 153 153 153 LEU LEU A . n C 3 154 TRP 154 154 154 TRP TRP A . n C 3 155 PHE 155 155 155 PHE PHE A . n C 3 156 THR 156 156 156 THR THR A . n C 3 157 THR 157 157 157 THR THR A . n C 3 158 GLU 158 158 158 GLU GLU A . n C 3 159 TRP 159 159 159 TRP TRP A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 LYS 161 161 161 LYS LYS A . n C 3 162 LEU 162 162 162 LEU LEU A . n C 3 163 VAL 163 163 163 VAL VAL A . n C 3 164 ASN 164 164 164 ASN ASN A . n C 3 165 SER 165 165 165 SER SER A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 ALA 167 167 167 ALA ALA A . n C 3 168 PRO 168 168 168 PRO PRO A . n C 3 169 GLY 169 169 169 GLY GLY A . n C 3 170 THR 170 170 170 THR THR A . n C 3 171 TYR 171 171 171 TYR TYR A . n C 3 172 LYS 172 172 172 LYS LYS A . n C 3 173 LYS 173 173 173 LYS LYS A . n C 3 174 GLU 174 174 174 GLU GLU A . n C 3 175 ILE 175 175 175 ILE ILE A . n C 3 176 SER 176 176 176 SER SER A . n C 3 177 GLU 177 177 177 GLU GLU A . n C 3 178 PRO 178 178 178 PRO PRO A . n C 3 179 ARG 179 179 179 ARG ARG A . n C 3 180 LEU 180 180 180 LEU LEU A . n C 3 181 VAL 181 181 181 VAL VAL A . n C 3 182 ILE 182 182 182 ILE ILE A . n C 3 183 PRO 183 183 183 PRO PRO A . n C 3 184 ILE 184 184 184 ILE ILE A . n C 3 185 TYR 185 185 185 TYR TYR A . n C 3 186 ASN 186 186 186 ASN ASN A . n C 3 187 ALA 187 187 187 ALA ALA A . n C 3 188 ASN 188 188 188 ASN ASN A . n C 3 189 GLY 189 189 189 GLY GLY A . n C 3 190 LYS 190 190 190 LYS LYS A . n C 3 191 ALA 191 191 191 ALA ALA A . n C 3 192 GLU 192 192 192 GLU GLU A . n C 3 193 SER 193 193 193 SER SER A . n C 3 194 PHE 194 194 194 PHE PHE A . n C 3 195 GLN 195 195 195 GLN GLN A . n C 3 196 GLY 196 196 196 GLY GLY A . n C 3 197 ARG 197 197 197 ARG ARG A . n C 3 198 ALA 198 198 198 ALA ALA A . n C 3 199 LEU 199 199 199 LEU LEU A . n C 3 200 LYS 200 200 200 LYS LYS A . n C 3 201 LYS 201 201 201 LYS LYS A . n C 3 202 ASP 202 202 202 ASP ASP A . n C 3 203 ALA 203 203 203 ALA ALA A . n C 3 204 PRO 204 204 204 PRO PRO A . n C 3 205 GLN 205 205 205 GLN GLN A . n C 3 206 LYS 206 206 206 LYS LYS A . n C 3 207 TYR 207 207 207 TYR TYR A . n C 3 208 ILE 208 208 208 ILE ILE A . n C 3 209 THR 209 209 209 THR THR A . n C 3 210 ILE 210 210 210 ILE ILE A . n C 3 211 GLU 211 211 211 GLU GLU A . n C 3 212 ALA 212 212 212 ALA ALA A . n C 3 213 TYR 213 213 213 TYR TYR A . n C 3 214 PRO 214 214 214 PRO PRO A . n C 3 215 GLU 215 215 215 GLU GLU A . n C 3 216 ALA 216 216 216 ALA ALA A . n C 3 217 THR 217 217 217 THR THR A . n C 3 218 LYS 218 218 218 LYS LYS A . n C 3 219 ILE 219 219 219 ILE ILE A . n C 3 220 TYR 220 220 220 TYR TYR A . n C 3 221 GLY 221 221 221 GLY GLY A . n C 3 222 VAL 222 222 222 VAL VAL A . n C 3 223 GLU 223 223 223 GLU GLU A . n C 3 224 ARG 224 224 224 ARG ARG A . n C 3 225 VAL 225 225 225 VAL VAL A . n C 3 226 LYS 226 226 226 LYS LYS A . n C 3 227 ASP 227 227 227 ASP ASP A . n C 3 228 GLY 228 228 228 GLY GLY A . n C 3 229 ASP 229 229 229 ASP ASP A . n C 3 230 VAL 230 230 230 VAL VAL A . n C 3 231 TYR 231 231 231 TYR TYR A . n C 3 232 VAL 232 232 232 VAL VAL A . n C 3 233 LEU 233 233 233 LEU LEU A . n C 3 234 GLU 234 234 234 GLU GLU A . n C 3 235 GLY 235 235 235 GLY GLY A . n C 3 236 PRO 236 236 236 PRO PRO A . n C 3 237 ILE 237 237 237 ILE ILE A . n C 3 238 ASP 238 238 238 ASP ASP A . n C 3 239 SER 239 239 239 SER SER A . n C 3 240 LEU 240 240 240 LEU LEU A . n C 3 241 PHE 241 241 241 PHE PHE A . n C 3 242 ILE 242 242 242 ILE ILE A . n C 3 243 GLU 243 243 243 GLU GLU A . n C 3 244 ASN 244 244 244 ASN ASN A . n C 3 245 GLY 245 245 245 GLY GLY A . n C 3 246 ILE 246 246 246 ILE ILE A . n C 3 247 ALA 247 247 247 ALA ALA A . n C 3 248 ILE 248 248 248 ILE ILE A . n C 3 249 THR 249 249 249 THR THR A . n C 3 250 GLY 250 250 250 GLY GLY A . n C 3 251 GLY 251 251 251 GLY GLY A . n C 3 252 GLN 252 252 252 GLN GLN A . n C 3 253 LEU 253 253 253 LEU LEU A . n C 3 254 ASP 254 254 254 ASP ASP A . n C 3 255 LEU 255 255 255 LEU LEU A . n C 3 256 GLU 256 256 256 GLU GLU A . n C 3 257 VAL 257 257 257 VAL VAL A . n C 3 258 VAL 258 258 258 VAL VAL A . n C 3 259 PRO 259 259 259 PRO PRO A . n C 3 260 PHE 260 260 260 PHE PHE A . n C 3 261 LYS 261 261 261 LYS LYS A . n C 3 262 ASP 262 262 262 ASP ASP A . n C 3 263 ARG 263 263 263 ARG ARG A . n C 3 264 ARG 264 264 264 ARG ARG A . n C 3 265 VAL 265 265 265 VAL VAL A . n C 3 266 TRP 266 266 266 TRP TRP A . n C 3 267 VAL 267 267 267 VAL VAL A . n C 3 268 LEU 268 268 268 LEU LEU A . n C 3 269 ASP 269 269 269 ASP ASP A . n C 3 270 ASN 270 270 270 ASN ASN A . n C 3 271 GLU 271 271 271 GLU GLU A . n C 3 272 PRO 272 272 272 PRO PRO A . n C 3 273 ARG 273 273 273 ARG ARG A . n C 3 274 HIS 274 274 274 HIS HIS A . n C 3 275 PRO 275 275 275 PRO PRO A . n C 3 276 ASP 276 276 276 ASP ASP A . n C 3 277 THR 277 277 277 THR THR A . n C 3 278 ILE 278 278 278 ILE ILE A . n C 3 279 LYS 279 279 279 LYS LYS A . n C 3 280 ARG 280 280 280 ARG ARG A . n C 3 281 MET 281 281 281 MET MET A . n C 3 282 THR 282 282 282 THR THR A . n C 3 283 LYS 283 283 283 LYS LYS A . n C 3 284 LEU 284 284 284 LEU LEU A . n C 3 285 VAL 285 285 285 VAL VAL A . n C 3 286 ASP 286 286 286 ASP ASP A . n C 3 287 ALA 287 287 287 ALA ALA A . n C 3 288 GLY 288 288 288 GLY GLY A . n C 3 289 GLU 289 289 289 GLU GLU A . n C 3 290 ARG 290 290 290 ARG ARG A . n C 3 291 VAL 291 291 291 VAL VAL A . n C 3 292 MET 292 292 292 MET MET A . n C 3 293 PHE 293 293 293 PHE PHE A . n C 3 294 TRP 294 294 294 TRP TRP A . n C 3 295 ASP 295 295 295 ASP ASP A . n C 3 296 LYS 296 296 296 LYS LYS A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 PRO 298 298 298 PRO PRO A . n C 3 299 TRP 299 299 299 TRP TRP A . n C 3 300 LYS 300 300 300 LYS LYS A . n C 3 301 SER 301 301 301 SER SER A . n C 3 302 LYS 302 302 302 LYS LYS A . n C 3 303 ASP 303 303 303 ASP ASP A . n C 3 304 VAL 304 304 304 VAL VAL A . n C 3 305 ASN 305 305 305 ASN ASN A . n C 3 306 ASP 306 306 306 ASP ASP A . n C 3 307 MET 307 307 307 MET MET A . n C 3 308 ILE 308 308 308 ILE ILE A . n C 3 309 ARG 309 309 309 ARG ARG A . n C 3 310 LYS 310 310 310 LYS LYS A . n C 3 311 GLU 311 311 311 GLU GLU A . n C 3 312 GLY 312 312 312 GLY GLY A . n C 3 313 ALA 313 313 313 ALA ALA A . n C 3 314 THR 314 314 314 THR THR A . n C 3 315 PRO 315 315 315 PRO PRO A . n C 3 316 GLU 316 316 316 GLU GLU A . n C 3 317 GLN 317 317 317 GLN GLN A . n C 3 318 ILE 318 318 318 ILE ILE A . n C 3 319 MET 319 319 319 MET MET A . n C 3 320 GLU 320 320 320 GLU GLU A . n C 3 321 TYR 321 321 321 TYR TYR A . n C 3 322 MET 322 322 322 MET MET A . n C 3 323 LYS 323 323 323 LYS LYS A . n C 3 324 ASN 324 324 324 ASN ASN A . n C 3 325 ASN 325 325 325 ASN ASN A . n C 3 326 ILE 326 326 326 ILE ILE A . n C 3 327 ALA 327 327 327 ALA ALA A . n C 3 328 GLN 328 328 328 GLN GLN A . n C 3 329 GLY 329 329 329 GLY GLY A . n C 3 330 LEU 330 330 330 LEU LEU A . n C 3 331 MET 331 331 331 MET MET A . n C 3 332 ALA 332 332 332 ALA ALA A . n C 3 333 LYS 333 333 333 LYS LYS A . n C 3 334 MET 334 334 334 MET MET A . n C 3 335 ARG 335 335 335 ARG ARG A . n C 3 336 LEU 336 336 336 LEU LEU A . n C 3 337 SER 337 337 337 SER SER A . n C 3 338 LYS 338 338 338 LYS LYS A . n C 3 339 TYR 339 339 339 TYR TYR A . n C 3 340 ALA 340 340 340 ALA ALA A . n C 3 341 LYS 341 341 341 LYS LYS A . n C 3 342 ILE 342 342 ? ? ? A . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email huilin.li@vai.org _pdbx_contact_author.name_first Huilin _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8085-8928 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 525 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 37 ? A CYS 37 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 40 ? A CYS 40 ? 1_555 131.7 ? 2 SG ? C CYS 37 ? A CYS 37 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 65 ? A CYS 65 ? 1_555 99.6 ? 3 SG ? C CYS 40 ? A CYS 40 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 65 ? A CYS 65 ? 1_555 121.3 ? 4 SG ? C CYS 37 ? A CYS 37 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 68 ? A CYS 68 ? 1_555 97.6 ? 5 SG ? C CYS 40 ? A CYS 40 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 68 ? A CYS 68 ? 1_555 104.8 ? 6 SG ? C CYS 65 ? A CYS 65 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? C CYS 68 ? A CYS 68 ? 1_555 92.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-06-14 2 'Structure model' 1 1 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author # _pdbx_entry_details.entry_id 8DWJ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 8DWJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.details _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.pdb_entry_id 1 1 ? ? ? 6N9U 1 2 ? ? ? 2AU3 # _em_3d_reconstruction.entry_id 8DWJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 157809 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM HEPES pH 7.8, 100 mM NaCl, 10 mM MgCl2 and 2 mM DTT' _em_buffer.pH 7.8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Complex of T4 bacteriophage primosome including helicase gp41, primase gp61 and ssDNA/RNA hybrid' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8DWJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 8DWJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8DWJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 42 ? ? 53.69 -125.67 2 1 ASP A 46 ? ? -91.03 53.46 3 1 LYS A 111 ? ? -73.87 -161.21 4 1 PRO A 113 ? ? -75.50 -167.48 5 1 LYS A 116 ? ? -119.31 51.33 6 1 LYS A 200 ? ? 58.17 -142.14 7 1 LYS A 206 ? ? 60.84 65.29 8 1 LYS A 226 ? ? -102.01 -168.77 9 1 SER A 301 ? ? -73.36 -166.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 T DG -34 ? B DG 1 2 1 Y 1 T DA -33 ? B DA 2 3 1 Y 1 T DA -32 ? B DA 3 4 1 Y 1 T DT -31 ? B DT 4 5 1 Y 1 T DG -30 ? B DG 5 6 1 Y 1 T DA -29 ? B DA 6 7 1 Y 1 T DG -28 ? B DG 7 8 1 Y 1 T DG -27 ? B DG 8 9 1 Y 1 T DA -26 ? B DA 9 10 1 Y 1 T DG -25 ? B DG 10 11 1 Y 1 T DT -24 ? B DT 11 12 1 Y 1 T DA -23 ? B DA 12 13 1 Y 1 T DG -22 ? B DG 13 14 1 Y 1 T DT -21 ? B DT 14 15 1 Y 1 T DA -20 ? B DA 15 16 1 Y 1 T DG -19 ? B DG 16 17 1 Y 1 T DT -18 ? B DT 17 18 1 Y 1 T DG -17 ? B DG 18 19 1 Y 1 T DA -16 ? B DA 19 20 1 Y 1 T DA -15 ? B DA 20 21 1 Y 1 T DT -14 ? B DT 21 22 1 Y 1 T DG -13 ? B DG 22 23 1 Y 1 T DT -12 ? B DT 23 24 1 Y 1 T DA -11 ? B DA 24 25 1 Y 1 T DG -10 ? B DG 25 26 1 Y 1 T DT -9 ? B DT 26 27 1 Y 1 T DG -8 ? B DG 27 28 1 Y 1 T DA -7 ? B DA 28 29 1 Y 1 T DG -6 ? B DG 29 30 1 Y 1 T DG -5 ? B DG 30 31 1 Y 1 T DT -4 ? B DT 31 32 1 Y 1 T DA -3 ? B DA 32 33 1 Y 1 T DA -2 ? B DA 33 34 1 Y 1 T DT -1 ? B DT 34 35 1 Y 1 T DA 0 ? B DA 35 36 1 Y 1 T DG 8 ? B DG 43 37 1 Y 1 T DT 9 ? B DT 44 38 1 Y 1 T DC 10 ? B DC 45 39 1 Y 1 T DT 11 ? B DT 46 40 1 Y 1 T DG 12 ? B DG 47 41 1 Y 1 T DG 13 ? B DG 48 42 1 Y 1 T DT 14 ? B DT 49 43 1 Y 1 T DC 15 ? B DC 50 44 1 Y 1 T DT 16 ? B DT 51 45 1 Y 1 T DG 17 ? B DG 52 46 1 Y 1 T DT 18 ? B DT 53 47 1 Y 1 T DG 19 ? B DG 54 48 1 Y 1 T DC 20 ? B DC 55 49 1 Y 1 T DC 21 ? B DC 56 50 1 Y 1 T DA 22 ? B DA 57 51 1 Y 1 T DA 23 ? B DA 58 52 1 Y 1 T DG 24 ? B DG 59 53 1 Y 1 T DT 25 ? B DT 60 54 1 Y 1 T DT 26 ? B DT 61 55 1 Y 1 T DG 27 ? B DG 62 56 1 Y 1 T DC 28 ? B DC 63 57 1 Y 1 T DT 29 ? B DT 64 58 1 Y 1 T DG 30 ? B DG 65 59 1 Y 1 T DC 31 ? B DC 66 60 1 Y 1 T DA 32 ? B DA 67 61 1 Y 1 T DA 33 ? B DA 68 62 1 Y 1 T DA 34 ? B DA 69 63 1 Y 1 T DA 35 ? B DA 70 64 1 Y 1 A MET 1 ? C MET 1 65 1 Y 1 A SER 2 ? C SER 2 66 1 Y 1 A ILE 342 ? C ILE 342 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 DA OP3 O N N 160 DA P P N N 161 DA OP1 O N N 162 DA OP2 O N N 163 DA "O5'" O N N 164 DA "C5'" C N N 165 DA "C4'" C N R 166 DA "O4'" O N N 167 DA "C3'" C N S 168 DA "O3'" O N N 169 DA "C2'" C N N 170 DA "C1'" C N R 171 DA N9 N Y N 172 DA C8 C Y N 173 DA N7 N Y N 174 DA C5 C Y N 175 DA C6 C Y N 176 DA N6 N N N 177 DA N1 N Y N 178 DA C2 C Y N 179 DA N3 N Y N 180 DA C4 C Y N 181 DA HOP3 H N N 182 DA HOP2 H N N 183 DA "H5'" H N N 184 DA "H5''" H N N 185 DA "H4'" H N N 186 DA "H3'" H N N 187 DA "HO3'" H N N 188 DA "H2'" H N N 189 DA "H2''" H N N 190 DA "H1'" H N N 191 DA H8 H N N 192 DA H61 H N N 193 DA H62 H N N 194 DA H2 H N N 195 DC OP3 O N N 196 DC P P N N 197 DC OP1 O N N 198 DC OP2 O N N 199 DC "O5'" O N N 200 DC "C5'" C N N 201 DC "C4'" C N R 202 DC "O4'" O N N 203 DC "C3'" C N S 204 DC "O3'" O N N 205 DC "C2'" C N N 206 DC "C1'" C N R 207 DC N1 N N N 208 DC C2 C N N 209 DC O2 O N N 210 DC N3 N N N 211 DC C4 C N N 212 DC N4 N N N 213 DC C5 C N N 214 DC C6 C N N 215 DC HOP3 H N N 216 DC HOP2 H N N 217 DC "H5'" H N N 218 DC "H5''" H N N 219 DC "H4'" H N N 220 DC "H3'" H N N 221 DC "HO3'" H N N 222 DC "H2'" H N N 223 DC "H2''" H N N 224 DC "H1'" H N N 225 DC H41 H N N 226 DC H42 H N N 227 DC H5 H N N 228 DC H6 H N N 229 DG OP3 O N N 230 DG P P N N 231 DG OP1 O N N 232 DG OP2 O N N 233 DG "O5'" O N N 234 DG "C5'" C N N 235 DG "C4'" C N R 236 DG "O4'" O N N 237 DG "C3'" C N S 238 DG "O3'" O N N 239 DG "C2'" C N N 240 DG "C1'" C N R 241 DG N9 N Y N 242 DG C8 C Y N 243 DG N7 N Y N 244 DG C5 C Y N 245 DG C6 C N N 246 DG O6 O N N 247 DG N1 N N N 248 DG C2 C N N 249 DG N2 N N N 250 DG N3 N N N 251 DG C4 C Y N 252 DG HOP3 H N N 253 DG HOP2 H N N 254 DG "H5'" H N N 255 DG "H5''" H N N 256 DG "H4'" H N N 257 DG "H3'" H N N 258 DG "HO3'" H N N 259 DG "H2'" H N N 260 DG "H2''" H N N 261 DG "H1'" H N N 262 DG H8 H N N 263 DG H1 H N N 264 DG H21 H N N 265 DG H22 H N N 266 DT OP3 O N N 267 DT P P N N 268 DT OP1 O N N 269 DT OP2 O N N 270 DT "O5'" O N N 271 DT "C5'" C N N 272 DT "C4'" C N R 273 DT "O4'" O N N 274 DT "C3'" C N S 275 DT "O3'" O N N 276 DT "C2'" C N N 277 DT "C1'" C N R 278 DT N1 N N N 279 DT C2 C N N 280 DT O2 O N N 281 DT N3 N N N 282 DT C4 C N N 283 DT O4 O N N 284 DT C5 C N N 285 DT C7 C N N 286 DT C6 C N N 287 DT HOP3 H N N 288 DT HOP2 H N N 289 DT "H5'" H N N 290 DT "H5''" H N N 291 DT "H4'" H N N 292 DT "H3'" H N N 293 DT "HO3'" H N N 294 DT "H2'" H N N 295 DT "H2''" H N N 296 DT "H1'" H N N 297 DT H3 H N N 298 DT H71 H N N 299 DT H72 H N N 300 DT H73 H N N 301 DT H6 H N N 302 G OP3 O N N 303 G P P N N 304 G OP1 O N N 305 G OP2 O N N 306 G "O5'" O N N 307 G "C5'" C N N 308 G "C4'" C N R 309 G "O4'" O N N 310 G "C3'" C N S 311 G "O3'" O N N 312 G "C2'" C N R 313 G "O2'" O N N 314 G "C1'" C N R 315 G N9 N Y N 316 G C8 C Y N 317 G N7 N Y N 318 G C5 C Y N 319 G C6 C N N 320 G O6 O N N 321 G N1 N N N 322 G C2 C N N 323 G N2 N N N 324 G N3 N N N 325 G C4 C Y N 326 G HOP3 H N N 327 G HOP2 H N N 328 G "H5'" H N N 329 G "H5''" H N N 330 G "H4'" H N N 331 G "H3'" H N N 332 G "HO3'" H N N 333 G "H2'" H N N 334 G "HO2'" H N N 335 G "H1'" H N N 336 G H8 H N N 337 G H1 H N N 338 G H21 H N N 339 G H22 H N N 340 GLN N N N N 341 GLN CA C N S 342 GLN C C N N 343 GLN O O N N 344 GLN CB C N N 345 GLN CG C N N 346 GLN CD C N N 347 GLN OE1 O N N 348 GLN NE2 N N N 349 GLN OXT O N N 350 GLN H H N N 351 GLN H2 H N N 352 GLN HA H N N 353 GLN HB2 H N N 354 GLN HB3 H N N 355 GLN HG2 H N N 356 GLN HG3 H N N 357 GLN HE21 H N N 358 GLN HE22 H N N 359 GLN HXT H N N 360 GLU N N N N 361 GLU CA C N S 362 GLU C C N N 363 GLU O O N N 364 GLU CB C N N 365 GLU CG C N N 366 GLU CD C N N 367 GLU OE1 O N N 368 GLU OE2 O N N 369 GLU OXT O N N 370 GLU H H N N 371 GLU H2 H N N 372 GLU HA H N N 373 GLU HB2 H N N 374 GLU HB3 H N N 375 GLU HG2 H N N 376 GLU HG3 H N N 377 GLU HE2 H N N 378 GLU HXT H N N 379 GLY N N N N 380 GLY CA C N N 381 GLY C C N N 382 GLY O O N N 383 GLY OXT O N N 384 GLY H H N N 385 GLY H2 H N N 386 GLY HA2 H N N 387 GLY HA3 H N N 388 GLY HXT H N N 389 GTP PG P N N 390 GTP O1G O N N 391 GTP O2G O N N 392 GTP O3G O N N 393 GTP O3B O N N 394 GTP PB P N N 395 GTP O1B O N N 396 GTP O2B O N N 397 GTP O3A O N N 398 GTP PA P N N 399 GTP O1A O N N 400 GTP O2A O N N 401 GTP "O5'" O N N 402 GTP "C5'" C N N 403 GTP "C4'" C N R 404 GTP "O4'" O N N 405 GTP "C3'" C N S 406 GTP "O3'" O N N 407 GTP "C2'" C N R 408 GTP "O2'" O N N 409 GTP "C1'" C N R 410 GTP N9 N Y N 411 GTP C8 C Y N 412 GTP N7 N Y N 413 GTP C5 C Y N 414 GTP C6 C N N 415 GTP O6 O N N 416 GTP N1 N N N 417 GTP C2 C N N 418 GTP N2 N N N 419 GTP N3 N N N 420 GTP C4 C Y N 421 GTP HOG2 H N N 422 GTP HOG3 H N N 423 GTP HOB2 H N N 424 GTP HOA2 H N N 425 GTP "H5'" H N N 426 GTP "H5''" H N N 427 GTP "H4'" H N N 428 GTP "H3'" H N N 429 GTP "HO3'" H N N 430 GTP "H2'" H N N 431 GTP "HO2'" H N N 432 GTP "H1'" H N N 433 GTP H8 H N N 434 GTP HN1 H N N 435 GTP HN21 H N N 436 GTP HN22 H N N 437 HIS N N N N 438 HIS CA C N S 439 HIS C C N N 440 HIS O O N N 441 HIS CB C N N 442 HIS CG C Y N 443 HIS ND1 N Y N 444 HIS CD2 C Y N 445 HIS CE1 C Y N 446 HIS NE2 N Y N 447 HIS OXT O N N 448 HIS H H N N 449 HIS H2 H N N 450 HIS HA H N N 451 HIS HB2 H N N 452 HIS HB3 H N N 453 HIS HD1 H N N 454 HIS HD2 H N N 455 HIS HE1 H N N 456 HIS HE2 H N N 457 HIS HXT H N N 458 ILE N N N N 459 ILE CA C N S 460 ILE C C N N 461 ILE O O N N 462 ILE CB C N S 463 ILE CG1 C N N 464 ILE CG2 C N N 465 ILE CD1 C N N 466 ILE OXT O N N 467 ILE H H N N 468 ILE H2 H N N 469 ILE HA H N N 470 ILE HB H N N 471 ILE HG12 H N N 472 ILE HG13 H N N 473 ILE HG21 H N N 474 ILE HG22 H N N 475 ILE HG23 H N N 476 ILE HD11 H N N 477 ILE HD12 H N N 478 ILE HD13 H N N 479 ILE HXT H N N 480 LEU N N N N 481 LEU CA C N S 482 LEU C C N N 483 LEU O O N N 484 LEU CB C N N 485 LEU CG C N N 486 LEU CD1 C N N 487 LEU CD2 C N N 488 LEU OXT O N N 489 LEU H H N N 490 LEU H2 H N N 491 LEU HA H N N 492 LEU HB2 H N N 493 LEU HB3 H N N 494 LEU HG H N N 495 LEU HD11 H N N 496 LEU HD12 H N N 497 LEU HD13 H N N 498 LEU HD21 H N N 499 LEU HD22 H N N 500 LEU HD23 H N N 501 LEU HXT H N N 502 LYS N N N N 503 LYS CA C N S 504 LYS C C N N 505 LYS O O N N 506 LYS CB C N N 507 LYS CG C N N 508 LYS CD C N N 509 LYS CE C N N 510 LYS NZ N N N 511 LYS OXT O N N 512 LYS H H N N 513 LYS H2 H N N 514 LYS HA H N N 515 LYS HB2 H N N 516 LYS HB3 H N N 517 LYS HG2 H N N 518 LYS HG3 H N N 519 LYS HD2 H N N 520 LYS HD3 H N N 521 LYS HE2 H N N 522 LYS HE3 H N N 523 LYS HZ1 H N N 524 LYS HZ2 H N N 525 LYS HZ3 H N N 526 LYS HXT H N N 527 MET N N N N 528 MET CA C N S 529 MET C C N N 530 MET O O N N 531 MET CB C N N 532 MET CG C N N 533 MET SD S N N 534 MET CE C N N 535 MET OXT O N N 536 MET H H N N 537 MET H2 H N N 538 MET HA H N N 539 MET HB2 H N N 540 MET HB3 H N N 541 MET HG2 H N N 542 MET HG3 H N N 543 MET HE1 H N N 544 MET HE2 H N N 545 MET HE3 H N N 546 MET HXT H N N 547 PHE N N N N 548 PHE CA C N S 549 PHE C C N N 550 PHE O O N N 551 PHE CB C N N 552 PHE CG C Y N 553 PHE CD1 C Y N 554 PHE CD2 C Y N 555 PHE CE1 C Y N 556 PHE CE2 C Y N 557 PHE CZ C Y N 558 PHE OXT O N N 559 PHE H H N N 560 PHE H2 H N N 561 PHE HA H N N 562 PHE HB2 H N N 563 PHE HB3 H N N 564 PHE HD1 H N N 565 PHE HD2 H N N 566 PHE HE1 H N N 567 PHE HE2 H N N 568 PHE HZ H N N 569 PHE HXT H N N 570 PRO N N N N 571 PRO CA C N S 572 PRO C C N N 573 PRO O O N N 574 PRO CB C N N 575 PRO CG C N N 576 PRO CD C N N 577 PRO OXT O N N 578 PRO H H N N 579 PRO HA H N N 580 PRO HB2 H N N 581 PRO HB3 H N N 582 PRO HG2 H N N 583 PRO HG3 H N N 584 PRO HD2 H N N 585 PRO HD3 H N N 586 PRO HXT H N N 587 SER N N N N 588 SER CA C N S 589 SER C C N N 590 SER O O N N 591 SER CB C N N 592 SER OG O N N 593 SER OXT O N N 594 SER H H N N 595 SER H2 H N N 596 SER HA H N N 597 SER HB2 H N N 598 SER HB3 H N N 599 SER HG H N N 600 SER HXT H N N 601 THR N N N N 602 THR CA C N S 603 THR C C N N 604 THR O O N N 605 THR CB C N R 606 THR OG1 O N N 607 THR CG2 C N N 608 THR OXT O N N 609 THR H H N N 610 THR H2 H N N 611 THR HA H N N 612 THR HB H N N 613 THR HG1 H N N 614 THR HG21 H N N 615 THR HG22 H N N 616 THR HG23 H N N 617 THR HXT H N N 618 TRP N N N N 619 TRP CA C N S 620 TRP C C N N 621 TRP O O N N 622 TRP CB C N N 623 TRP CG C Y N 624 TRP CD1 C Y N 625 TRP CD2 C Y N 626 TRP NE1 N Y N 627 TRP CE2 C Y N 628 TRP CE3 C Y N 629 TRP CZ2 C Y N 630 TRP CZ3 C Y N 631 TRP CH2 C Y N 632 TRP OXT O N N 633 TRP H H N N 634 TRP H2 H N N 635 TRP HA H N N 636 TRP HB2 H N N 637 TRP HB3 H N N 638 TRP HD1 H N N 639 TRP HE1 H N N 640 TRP HE3 H N N 641 TRP HZ2 H N N 642 TRP HZ3 H N N 643 TRP HH2 H N N 644 TRP HXT H N N 645 TYR N N N N 646 TYR CA C N S 647 TYR C C N N 648 TYR O O N N 649 TYR CB C N N 650 TYR CG C Y N 651 TYR CD1 C Y N 652 TYR CD2 C Y N 653 TYR CE1 C Y N 654 TYR CE2 C Y N 655 TYR CZ C Y N 656 TYR OH O N N 657 TYR OXT O N N 658 TYR H H N N 659 TYR H2 H N N 660 TYR HA H N N 661 TYR HB2 H N N 662 TYR HB3 H N N 663 TYR HD1 H N N 664 TYR HD2 H N N 665 TYR HE1 H N N 666 TYR HE2 H N N 667 TYR HH H N N 668 TYR HXT H N N 669 VAL N N N N 670 VAL CA C N S 671 VAL C C N N 672 VAL O O N N 673 VAL CB C N N 674 VAL CG1 C N N 675 VAL CG2 C N N 676 VAL OXT O N N 677 VAL H H N N 678 VAL H2 H N N 679 VAL HA H N N 680 VAL HB H N N 681 VAL HG11 H N N 682 VAL HG12 H N N 683 VAL HG13 H N N 684 VAL HG21 H N N 685 VAL HG22 H N N 686 VAL HG23 H N N 687 VAL HXT H N N 688 ZN ZN ZN N N 689 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 DA OP3 P sing N N 158 DA OP3 HOP3 sing N N 159 DA P OP1 doub N N 160 DA P OP2 sing N N 161 DA P "O5'" sing N N 162 DA OP2 HOP2 sing N N 163 DA "O5'" "C5'" sing N N 164 DA "C5'" "C4'" sing N N 165 DA "C5'" "H5'" sing N N 166 DA "C5'" "H5''" sing N N 167 DA "C4'" "O4'" sing N N 168 DA "C4'" "C3'" sing N N 169 DA "C4'" "H4'" sing N N 170 DA "O4'" "C1'" sing N N 171 DA "C3'" "O3'" sing N N 172 DA "C3'" "C2'" sing N N 173 DA "C3'" "H3'" sing N N 174 DA "O3'" "HO3'" sing N N 175 DA "C2'" "C1'" sing N N 176 DA "C2'" "H2'" sing N N 177 DA "C2'" "H2''" sing N N 178 DA "C1'" N9 sing N N 179 DA "C1'" "H1'" sing N N 180 DA N9 C8 sing Y N 181 DA N9 C4 sing Y N 182 DA C8 N7 doub Y N 183 DA C8 H8 sing N N 184 DA N7 C5 sing Y N 185 DA C5 C6 sing Y N 186 DA C5 C4 doub Y N 187 DA C6 N6 sing N N 188 DA C6 N1 doub Y N 189 DA N6 H61 sing N N 190 DA N6 H62 sing N N 191 DA N1 C2 sing Y N 192 DA C2 N3 doub Y N 193 DA C2 H2 sing N N 194 DA N3 C4 sing Y N 195 DC OP3 P sing N N 196 DC OP3 HOP3 sing N N 197 DC P OP1 doub N N 198 DC P OP2 sing N N 199 DC P "O5'" sing N N 200 DC OP2 HOP2 sing N N 201 DC "O5'" "C5'" sing N N 202 DC "C5'" "C4'" sing N N 203 DC "C5'" "H5'" sing N N 204 DC "C5'" "H5''" sing N N 205 DC "C4'" "O4'" sing N N 206 DC "C4'" "C3'" sing N N 207 DC "C4'" "H4'" sing N N 208 DC "O4'" "C1'" sing N N 209 DC "C3'" "O3'" sing N N 210 DC "C3'" "C2'" sing N N 211 DC "C3'" "H3'" sing N N 212 DC "O3'" "HO3'" sing N N 213 DC "C2'" "C1'" sing N N 214 DC "C2'" "H2'" sing N N 215 DC "C2'" "H2''" sing N N 216 DC "C1'" N1 sing N N 217 DC "C1'" "H1'" sing N N 218 DC N1 C2 sing N N 219 DC N1 C6 sing N N 220 DC C2 O2 doub N N 221 DC C2 N3 sing N N 222 DC N3 C4 doub N N 223 DC C4 N4 sing N N 224 DC C4 C5 sing N N 225 DC N4 H41 sing N N 226 DC N4 H42 sing N N 227 DC C5 C6 doub N N 228 DC C5 H5 sing N N 229 DC C6 H6 sing N N 230 DG OP3 P sing N N 231 DG OP3 HOP3 sing N N 232 DG P OP1 doub N N 233 DG P OP2 sing N N 234 DG P "O5'" sing N N 235 DG OP2 HOP2 sing N N 236 DG "O5'" "C5'" sing N N 237 DG "C5'" "C4'" sing N N 238 DG "C5'" "H5'" sing N N 239 DG "C5'" "H5''" sing N N 240 DG "C4'" "O4'" sing N N 241 DG "C4'" "C3'" sing N N 242 DG "C4'" "H4'" sing N N 243 DG "O4'" "C1'" sing N N 244 DG "C3'" "O3'" sing N N 245 DG "C3'" "C2'" sing N N 246 DG "C3'" "H3'" sing N N 247 DG "O3'" "HO3'" sing N N 248 DG "C2'" "C1'" sing N N 249 DG "C2'" "H2'" sing N N 250 DG "C2'" "H2''" sing N N 251 DG "C1'" N9 sing N N 252 DG "C1'" "H1'" sing N N 253 DG N9 C8 sing Y N 254 DG N9 C4 sing Y N 255 DG C8 N7 doub Y N 256 DG C8 H8 sing N N 257 DG N7 C5 sing Y N 258 DG C5 C6 sing N N 259 DG C5 C4 doub Y N 260 DG C6 O6 doub N N 261 DG C6 N1 sing N N 262 DG N1 C2 sing N N 263 DG N1 H1 sing N N 264 DG C2 N2 sing N N 265 DG C2 N3 doub N N 266 DG N2 H21 sing N N 267 DG N2 H22 sing N N 268 DG N3 C4 sing N N 269 DT OP3 P sing N N 270 DT OP3 HOP3 sing N N 271 DT P OP1 doub N N 272 DT P OP2 sing N N 273 DT P "O5'" sing N N 274 DT OP2 HOP2 sing N N 275 DT "O5'" "C5'" sing N N 276 DT "C5'" "C4'" sing N N 277 DT "C5'" "H5'" sing N N 278 DT "C5'" "H5''" sing N N 279 DT "C4'" "O4'" sing N N 280 DT "C4'" "C3'" sing N N 281 DT "C4'" "H4'" sing N N 282 DT "O4'" "C1'" sing N N 283 DT "C3'" "O3'" sing N N 284 DT "C3'" "C2'" sing N N 285 DT "C3'" "H3'" sing N N 286 DT "O3'" "HO3'" sing N N 287 DT "C2'" "C1'" sing N N 288 DT "C2'" "H2'" sing N N 289 DT "C2'" "H2''" sing N N 290 DT "C1'" N1 sing N N 291 DT "C1'" "H1'" sing N N 292 DT N1 C2 sing N N 293 DT N1 C6 sing N N 294 DT C2 O2 doub N N 295 DT C2 N3 sing N N 296 DT N3 C4 sing N N 297 DT N3 H3 sing N N 298 DT C4 O4 doub N N 299 DT C4 C5 sing N N 300 DT C5 C7 sing N N 301 DT C5 C6 doub N N 302 DT C7 H71 sing N N 303 DT C7 H72 sing N N 304 DT C7 H73 sing N N 305 DT C6 H6 sing N N 306 G OP3 P sing N N 307 G OP3 HOP3 sing N N 308 G P OP1 doub N N 309 G P OP2 sing N N 310 G P "O5'" sing N N 311 G OP2 HOP2 sing N N 312 G "O5'" "C5'" sing N N 313 G "C5'" "C4'" sing N N 314 G "C5'" "H5'" sing N N 315 G "C5'" "H5''" sing N N 316 G "C4'" "O4'" sing N N 317 G "C4'" "C3'" sing N N 318 G "C4'" "H4'" sing N N 319 G "O4'" "C1'" sing N N 320 G "C3'" "O3'" sing N N 321 G "C3'" "C2'" sing N N 322 G "C3'" "H3'" sing N N 323 G "O3'" "HO3'" sing N N 324 G "C2'" "O2'" sing N N 325 G "C2'" "C1'" sing N N 326 G "C2'" "H2'" sing N N 327 G "O2'" "HO2'" sing N N 328 G "C1'" N9 sing N N 329 G "C1'" "H1'" sing N N 330 G N9 C8 sing Y N 331 G N9 C4 sing Y N 332 G C8 N7 doub Y N 333 G C8 H8 sing N N 334 G N7 C5 sing Y N 335 G C5 C6 sing N N 336 G C5 C4 doub Y N 337 G C6 O6 doub N N 338 G C6 N1 sing N N 339 G N1 C2 sing N N 340 G N1 H1 sing N N 341 G C2 N2 sing N N 342 G C2 N3 doub N N 343 G N2 H21 sing N N 344 G N2 H22 sing N N 345 G N3 C4 sing N N 346 GLN N CA sing N N 347 GLN N H sing N N 348 GLN N H2 sing N N 349 GLN CA C sing N N 350 GLN CA CB sing N N 351 GLN CA HA sing N N 352 GLN C O doub N N 353 GLN C OXT sing N N 354 GLN CB CG sing N N 355 GLN CB HB2 sing N N 356 GLN CB HB3 sing N N 357 GLN CG CD sing N N 358 GLN CG HG2 sing N N 359 GLN CG HG3 sing N N 360 GLN CD OE1 doub N N 361 GLN CD NE2 sing N N 362 GLN NE2 HE21 sing N N 363 GLN NE2 HE22 sing N N 364 GLN OXT HXT sing N N 365 GLU N CA sing N N 366 GLU N H sing N N 367 GLU N H2 sing N N 368 GLU CA C sing N N 369 GLU CA CB sing N N 370 GLU CA HA sing N N 371 GLU C O doub N N 372 GLU C OXT sing N N 373 GLU CB CG sing N N 374 GLU CB HB2 sing N N 375 GLU CB HB3 sing N N 376 GLU CG CD sing N N 377 GLU CG HG2 sing N N 378 GLU CG HG3 sing N N 379 GLU CD OE1 doub N N 380 GLU CD OE2 sing N N 381 GLU OE2 HE2 sing N N 382 GLU OXT HXT sing N N 383 GLY N CA sing N N 384 GLY N H sing N N 385 GLY N H2 sing N N 386 GLY CA C sing N N 387 GLY CA HA2 sing N N 388 GLY CA HA3 sing N N 389 GLY C O doub N N 390 GLY C OXT sing N N 391 GLY OXT HXT sing N N 392 GTP PG O1G doub N N 393 GTP PG O2G sing N N 394 GTP PG O3G sing N N 395 GTP PG O3B sing N N 396 GTP O2G HOG2 sing N N 397 GTP O3G HOG3 sing N N 398 GTP O3B PB sing N N 399 GTP PB O1B doub N N 400 GTP PB O2B sing N N 401 GTP PB O3A sing N N 402 GTP O2B HOB2 sing N N 403 GTP O3A PA sing N N 404 GTP PA O1A doub N N 405 GTP PA O2A sing N N 406 GTP PA "O5'" sing N N 407 GTP O2A HOA2 sing N N 408 GTP "O5'" "C5'" sing N N 409 GTP "C5'" "C4'" sing N N 410 GTP "C5'" "H5'" sing N N 411 GTP "C5'" "H5''" sing N N 412 GTP "C4'" "O4'" sing N N 413 GTP "C4'" "C3'" sing N N 414 GTP "C4'" "H4'" sing N N 415 GTP "O4'" "C1'" sing N N 416 GTP "C3'" "O3'" sing N N 417 GTP "C3'" "C2'" sing N N 418 GTP "C3'" "H3'" sing N N 419 GTP "O3'" "HO3'" sing N N 420 GTP "C2'" "O2'" sing N N 421 GTP "C2'" "C1'" sing N N 422 GTP "C2'" "H2'" sing N N 423 GTP "O2'" "HO2'" sing N N 424 GTP "C1'" N9 sing N N 425 GTP "C1'" "H1'" sing N N 426 GTP N9 C8 sing Y N 427 GTP N9 C4 sing Y N 428 GTP C8 N7 doub Y N 429 GTP C8 H8 sing N N 430 GTP N7 C5 sing Y N 431 GTP C5 C6 sing N N 432 GTP C5 C4 doub Y N 433 GTP C6 O6 doub N N 434 GTP C6 N1 sing N N 435 GTP N1 C2 sing N N 436 GTP N1 HN1 sing N N 437 GTP C2 N2 sing N N 438 GTP C2 N3 doub N N 439 GTP N2 HN21 sing N N 440 GTP N2 HN22 sing N N 441 GTP N3 C4 sing N N 442 HIS N CA sing N N 443 HIS N H sing N N 444 HIS N H2 sing N N 445 HIS CA C sing N N 446 HIS CA CB sing N N 447 HIS CA HA sing N N 448 HIS C O doub N N 449 HIS C OXT sing N N 450 HIS CB CG sing N N 451 HIS CB HB2 sing N N 452 HIS CB HB3 sing N N 453 HIS CG ND1 sing Y N 454 HIS CG CD2 doub Y N 455 HIS ND1 CE1 doub Y N 456 HIS ND1 HD1 sing N N 457 HIS CD2 NE2 sing Y N 458 HIS CD2 HD2 sing N N 459 HIS CE1 NE2 sing Y N 460 HIS CE1 HE1 sing N N 461 HIS NE2 HE2 sing N N 462 HIS OXT HXT sing N N 463 ILE N CA sing N N 464 ILE N H sing N N 465 ILE N H2 sing N N 466 ILE CA C sing N N 467 ILE CA CB sing N N 468 ILE CA HA sing N N 469 ILE C O doub N N 470 ILE C OXT sing N N 471 ILE CB CG1 sing N N 472 ILE CB CG2 sing N N 473 ILE CB HB sing N N 474 ILE CG1 CD1 sing N N 475 ILE CG1 HG12 sing N N 476 ILE CG1 HG13 sing N N 477 ILE CG2 HG21 sing N N 478 ILE CG2 HG22 sing N N 479 ILE CG2 HG23 sing N N 480 ILE CD1 HD11 sing N N 481 ILE CD1 HD12 sing N N 482 ILE CD1 HD13 sing N N 483 ILE OXT HXT sing N N 484 LEU N CA sing N N 485 LEU N H sing N N 486 LEU N H2 sing N N 487 LEU CA C sing N N 488 LEU CA CB sing N N 489 LEU CA HA sing N N 490 LEU C O doub N N 491 LEU C OXT sing N N 492 LEU CB CG sing N N 493 LEU CB HB2 sing N N 494 LEU CB HB3 sing N N 495 LEU CG CD1 sing N N 496 LEU CG CD2 sing N N 497 LEU CG HG sing N N 498 LEU CD1 HD11 sing N N 499 LEU CD1 HD12 sing N N 500 LEU CD1 HD13 sing N N 501 LEU CD2 HD21 sing N N 502 LEU CD2 HD22 sing N N 503 LEU CD2 HD23 sing N N 504 LEU OXT HXT sing N N 505 LYS N CA sing N N 506 LYS N H sing N N 507 LYS N H2 sing N N 508 LYS CA C sing N N 509 LYS CA CB sing N N 510 LYS CA HA sing N N 511 LYS C O doub N N 512 LYS C OXT sing N N 513 LYS CB CG sing N N 514 LYS CB HB2 sing N N 515 LYS CB HB3 sing N N 516 LYS CG CD sing N N 517 LYS CG HG2 sing N N 518 LYS CG HG3 sing N N 519 LYS CD CE sing N N 520 LYS CD HD2 sing N N 521 LYS CD HD3 sing N N 522 LYS CE NZ sing N N 523 LYS CE HE2 sing N N 524 LYS CE HE3 sing N N 525 LYS NZ HZ1 sing N N 526 LYS NZ HZ2 sing N N 527 LYS NZ HZ3 sing N N 528 LYS OXT HXT sing N N 529 MET N CA sing N N 530 MET N H sing N N 531 MET N H2 sing N N 532 MET CA C sing N N 533 MET CA CB sing N N 534 MET CA HA sing N N 535 MET C O doub N N 536 MET C OXT sing N N 537 MET CB CG sing N N 538 MET CB HB2 sing N N 539 MET CB HB3 sing N N 540 MET CG SD sing N N 541 MET CG HG2 sing N N 542 MET CG HG3 sing N N 543 MET SD CE sing N N 544 MET CE HE1 sing N N 545 MET CE HE2 sing N N 546 MET CE HE3 sing N N 547 MET OXT HXT sing N N 548 PHE N CA sing N N 549 PHE N H sing N N 550 PHE N H2 sing N N 551 PHE CA C sing N N 552 PHE CA CB sing N N 553 PHE CA HA sing N N 554 PHE C O doub N N 555 PHE C OXT sing N N 556 PHE CB CG sing N N 557 PHE CB HB2 sing N N 558 PHE CB HB3 sing N N 559 PHE CG CD1 doub Y N 560 PHE CG CD2 sing Y N 561 PHE CD1 CE1 sing Y N 562 PHE CD1 HD1 sing N N 563 PHE CD2 CE2 doub Y N 564 PHE CD2 HD2 sing N N 565 PHE CE1 CZ doub Y N 566 PHE CE1 HE1 sing N N 567 PHE CE2 CZ sing Y N 568 PHE CE2 HE2 sing N N 569 PHE CZ HZ sing N N 570 PHE OXT HXT sing N N 571 PRO N CA sing N N 572 PRO N CD sing N N 573 PRO N H sing N N 574 PRO CA C sing N N 575 PRO CA CB sing N N 576 PRO CA HA sing N N 577 PRO C O doub N N 578 PRO C OXT sing N N 579 PRO CB CG sing N N 580 PRO CB HB2 sing N N 581 PRO CB HB3 sing N N 582 PRO CG CD sing N N 583 PRO CG HG2 sing N N 584 PRO CG HG3 sing N N 585 PRO CD HD2 sing N N 586 PRO CD HD3 sing N N 587 PRO OXT HXT sing N N 588 SER N CA sing N N 589 SER N H sing N N 590 SER N H2 sing N N 591 SER CA C sing N N 592 SER CA CB sing N N 593 SER CA HA sing N N 594 SER C O doub N N 595 SER C OXT sing N N 596 SER CB OG sing N N 597 SER CB HB2 sing N N 598 SER CB HB3 sing N N 599 SER OG HG sing N N 600 SER OXT HXT sing N N 601 THR N CA sing N N 602 THR N H sing N N 603 THR N H2 sing N N 604 THR CA C sing N N 605 THR CA CB sing N N 606 THR CA HA sing N N 607 THR C O doub N N 608 THR C OXT sing N N 609 THR CB OG1 sing N N 610 THR CB CG2 sing N N 611 THR CB HB sing N N 612 THR OG1 HG1 sing N N 613 THR CG2 HG21 sing N N 614 THR CG2 HG22 sing N N 615 THR CG2 HG23 sing N N 616 THR OXT HXT sing N N 617 TRP N CA sing N N 618 TRP N H sing N N 619 TRP N H2 sing N N 620 TRP CA C sing N N 621 TRP CA CB sing N N 622 TRP CA HA sing N N 623 TRP C O doub N N 624 TRP C OXT sing N N 625 TRP CB CG sing N N 626 TRP CB HB2 sing N N 627 TRP CB HB3 sing N N 628 TRP CG CD1 doub Y N 629 TRP CG CD2 sing Y N 630 TRP CD1 NE1 sing Y N 631 TRP CD1 HD1 sing N N 632 TRP CD2 CE2 doub Y N 633 TRP CD2 CE3 sing Y N 634 TRP NE1 CE2 sing Y N 635 TRP NE1 HE1 sing N N 636 TRP CE2 CZ2 sing Y N 637 TRP CE3 CZ3 doub Y N 638 TRP CE3 HE3 sing N N 639 TRP CZ2 CH2 doub Y N 640 TRP CZ2 HZ2 sing N N 641 TRP CZ3 CH2 sing Y N 642 TRP CZ3 HZ3 sing N N 643 TRP CH2 HH2 sing N N 644 TRP OXT HXT sing N N 645 TYR N CA sing N N 646 TYR N H sing N N 647 TYR N H2 sing N N 648 TYR CA C sing N N 649 TYR CA CB sing N N 650 TYR CA HA sing N N 651 TYR C O doub N N 652 TYR C OXT sing N N 653 TYR CB CG sing N N 654 TYR CB HB2 sing N N 655 TYR CB HB3 sing N N 656 TYR CG CD1 doub Y N 657 TYR CG CD2 sing Y N 658 TYR CD1 CE1 sing Y N 659 TYR CD1 HD1 sing N N 660 TYR CD2 CE2 doub Y N 661 TYR CD2 HD2 sing N N 662 TYR CE1 CZ doub Y N 663 TYR CE1 HE1 sing N N 664 TYR CE2 CZ sing Y N 665 TYR CE2 HE2 sing N N 666 TYR CZ OH sing N N 667 TYR OH HH sing N N 668 TYR OXT HXT sing N N 669 VAL N CA sing N N 670 VAL N H sing N N 671 VAL N H2 sing N N 672 VAL CA C sing N N 673 VAL CA CB sing N N 674 VAL CA HA sing N N 675 VAL C O doub N N 676 VAL C OXT sing N N 677 VAL CB CG1 sing N N 678 VAL CB CG2 sing N N 679 VAL CB HB sing N N 680 VAL CG1 HG11 sing N N 681 VAL CG1 HG12 sing N N 682 VAL CG1 HG13 sing N N 683 VAL CG2 HG21 sing N N 684 VAL CG2 HG22 sing N N 685 VAL CG2 HG23 sing N N 686 VAL OXT HXT sing N N 687 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 20 mM HEPES HEPES 1 2 100 mM NaCl 'sodium chloride' 1 3 10 mM MgCl2 'Magnesium chloride' 1 4 2 mM DTT DTT # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2681598 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Escherichia phage T4' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 66 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? SerialEM 3.8 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1.10 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? PHENIX 1.20 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 3.3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 3.1 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.20 ? 1 ? 14 'MODEL REFINEMENT' ? Coot 0.9.6 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _ndb_struct_conf_na.entry_id 8DWJ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 B DC 40 1_555 -0.654 -0.388 -0.871 -17.143 -6.335 1.863 1 P_GTP1:DC5_T P 1 ? T 5 ? 19 1 1 A C 2 1_555 B DG 39 1_555 0.122 -0.381 -0.975 -12.340 0.945 -1.031 2 P_C2:DG4_T P 2 ? T 4 ? 19 1 1 A C 3 1_555 B DG 38 1_555 0.152 -0.151 -0.159 -6.937 10.901 -1.332 3 P_C3:DG3_T P 3 ? T 3 ? 19 1 1 A G 4 1_555 B DC 37 1_555 -0.203 -0.198 -0.495 -5.109 -3.979 0.577 4 P_G4:DC2_T P 4 ? T 2 ? 19 1 1 A A 5 1_555 B DT 36 1_555 0.237 -0.621 -1.607 1.644 1.267 -1.735 5 P_A5:DT1_T P 5 ? T 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 B DC 40 1_555 A C 2 1_555 B DG 39 1_555 -1.265 -0.812 3.172 2.524 -4.177 45.329 -0.693 1.848 3.159 -5.402 -3.264 45.578 1 PP_GTP1C2:DG4DC5_TT P 1 ? T 5 ? P 2 ? T 4 ? 1 A C 2 1_555 B DG 39 1_555 A C 3 1_555 B DG 38 1_555 0.091 -1.082 3.445 -3.818 4.415 30.038 -2.950 -0.949 3.221 8.419 7.280 30.587 2 PP_C2C3:DG3DG4_TT P 2 ? T 4 ? P 3 ? T 3 ? 1 A C 3 1_555 B DG 38 1_555 A G 4 1_555 B DC 37 1_555 -0.042 -1.206 3.292 -0.630 19.766 30.379 -4.482 -0.013 2.138 33.618 1.071 36.121 3 PP_C3G4:DC2DG3_TT P 3 ? T 3 ? P 4 ? T 2 ? 1 A G 4 1_555 B DC 37 1_555 A A 5 1_555 B DT 36 1_555 -0.455 -1.069 3.777 -0.218 4.109 27.053 -3.414 0.900 3.582 8.719 0.462 27.359 4 PP_G4A5:DT1DC2_TT P 4 ? T 2 ? P 5 ? T 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM131754 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM013306 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? 2 GTP ? ? GTP ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 6N9U 2 'experimental model' PDB 2AU3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #