HEADER TRANSFERASE 02-AUG-22 8DX2 TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 4-AMINO-3- TITLE 2 BROMOPYRIDINE AT MULTIPLE SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 8 ORGANISM_TAXID: 11676; SOURCE 9 STRAIN: ISOLATE BH10; SOURCE 10 GENE: GAG-POL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DX2 1 REMARK REVDAT 1 31-MAY-23 8DX2 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.7 REMARK 3 NUMBER OF REFLECTIONS : 69545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.860 REMARK 3 FREE R VALUE TEST SET COUNT : 3240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0500 - 5.6700 0.66 4661 139 0.1724 0.2358 REMARK 3 2 5.6700 - 4.5100 0.67 4716 137 0.1521 0.1893 REMARK 3 3 4.5100 - 3.9400 0.67 4735 144 0.1507 0.1834 REMARK 3 4 3.9400 - 3.5800 0.68 4769 148 0.1667 0.2185 REMARK 3 5 3.5800 - 3.3200 0.68 4782 136 0.1944 0.2487 REMARK 3 6 3.3200 - 3.1300 0.67 4793 143 0.2034 0.3091 REMARK 3 7 3.1300 - 2.9700 0.67 4757 131 0.2187 0.2989 REMARK 3 8 2.9700 - 2.8400 0.68 4836 136 0.2076 0.2590 REMARK 3 9 2.8400 - 2.7300 0.68 4816 134 0.2129 0.2978 REMARK 3 10 2.7300 - 2.6400 0.68 4834 139 0.2113 0.3140 REMARK 3 11 2.6400 - 2.5500 0.67 4782 148 0.2063 0.2619 REMARK 3 12 2.5500 - 2.4800 0.67 4679 138 0.2065 0.2569 REMARK 3 13 2.4800 - 2.4200 0.69 4924 146 0.2086 0.2759 REMARK 3 14 2.4200 - 2.3600 0.68 4743 141 0.2059 0.2199 REMARK 3 15 2.3600 - 2.3000 0.68 4797 135 0.2029 0.2456 REMARK 3 16 2.3000 - 2.2500 0.68 4843 146 0.2162 0.2521 REMARK 3 17 2.2500 - 2.2100 0.69 4871 141 0.2075 0.2839 REMARK 3 18 2.2100 - 2.1700 0.69 4878 158 0.2175 0.2486 REMARK 3 19 2.1700 - 2.1300 0.70 4973 150 0.2169 0.2615 REMARK 3 20 2.1300 - 2.0900 0.69 4876 148 0.2300 0.2652 REMARK 3 21 2.0900 - 2.0600 0.68 4818 135 0.2337 0.2727 REMARK 3 22 2.0600 - 2.0300 0.69 4859 138 0.2470 0.3180 REMARK 3 23 2.0300 - 2.0000 0.62 4426 129 0.2603 0.3212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.823 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8365 REMARK 3 ANGLE : 0.990 11379 REMARK 3 CHIRALITY : 0.059 1217 REMARK 3 PLANARITY : 0.007 1432 REMARK 3 DIHEDRAL : 20.677 3155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7116 -15.5997 70.3827 REMARK 3 T TENSOR REMARK 3 T11: 0.5982 T22: 0.3810 REMARK 3 T33: 0.3315 T12: 0.0082 REMARK 3 T13: 0.1582 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.3393 L22: 0.1275 REMARK 3 L33: 0.2086 L12: 0.3018 REMARK 3 L13: -0.0716 L23: 0.2629 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: -0.2352 S13: -0.0448 REMARK 3 S21: 0.3606 S22: -0.0871 S23: 0.0861 REMARK 3 S31: 0.0902 S32: 0.1090 S33: 0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8516 -17.4893 58.9004 REMARK 3 T TENSOR REMARK 3 T11: 0.4933 T22: 0.3346 REMARK 3 T33: 0.3012 T12: -0.0101 REMARK 3 T13: 0.0845 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: -0.0076 L22: 0.0197 REMARK 3 L33: 0.1717 L12: -0.0407 REMARK 3 L13: 0.2682 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.1226 S12: 0.0401 S13: -0.0268 REMARK 3 S21: -0.0315 S22: 0.0138 S23: 0.1048 REMARK 3 S31: -0.0300 S32: -0.1778 S33: 0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9453 -20.3201 54.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.2914 REMARK 3 T33: 0.2432 T12: 0.0206 REMARK 3 T13: 0.0220 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.1734 L22: -0.0796 REMARK 3 L33: 0.2152 L12: 0.0069 REMARK 3 L13: 0.2126 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: -0.0915 S13: -0.1194 REMARK 3 S21: 0.0595 S22: 0.0764 S23: 0.0810 REMARK 3 S31: -0.0048 S32: 0.0304 S33: 0.1036 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7846 -26.9197 38.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.2987 REMARK 3 T33: 0.4164 T12: -0.0381 REMARK 3 T13: 0.0051 T23: 0.1489 REMARK 3 L TENSOR REMARK 3 L11: 0.4575 L22: 0.4304 REMARK 3 L33: 0.5986 L12: 0.4731 REMARK 3 L13: -0.0284 L23: 0.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.4162 S12: -0.2339 S13: -0.3269 REMARK 3 S21: 0.3150 S22: 0.0587 S23: 0.1038 REMARK 3 S31: 0.2280 S32: -0.3336 S33: 0.2906 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0878 -15.5943 17.4669 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.2567 REMARK 3 T33: 0.3320 T12: 0.0018 REMARK 3 T13: -0.0276 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0692 L22: 0.8387 REMARK 3 L33: 0.3649 L12: -0.2785 REMARK 3 L13: 0.3012 L23: -0.1815 REMARK 3 S TENSOR REMARK 3 S11: 0.1122 S12: -0.0170 S13: -0.1876 REMARK 3 S21: -0.0151 S22: 0.0583 S23: 0.2353 REMARK 3 S31: 0.0420 S32: -0.1609 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0539 6.9947 6.6696 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.3498 REMARK 3 T33: 0.2638 T12: 0.0113 REMARK 3 T13: 0.0419 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.6596 L22: 0.3982 REMARK 3 L33: 0.3864 L12: -0.2226 REMARK 3 L13: 0.9498 L23: -0.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.1541 S13: -0.1064 REMARK 3 S21: 0.0032 S22: 0.1347 S23: 0.0552 REMARK 3 S31: -0.0341 S32: -0.0456 S33: 0.0058 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1316 17.5458 4.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.2826 REMARK 3 T33: 0.3713 T12: 0.0063 REMARK 3 T13: -0.0062 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.1105 L22: 0.0097 REMARK 3 L33: 0.0033 L12: 0.1726 REMARK 3 L13: -0.0846 L23: 0.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0550 S13: 0.0366 REMARK 3 S21: -0.0717 S22: -0.1987 S23: 0.1369 REMARK 3 S31: -0.0836 S32: -0.0096 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4050 1.3502 36.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.2457 REMARK 3 T33: 0.2034 T12: -0.0347 REMARK 3 T13: 0.0106 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.5707 L22: 0.9906 REMARK 3 L33: 0.3712 L12: -0.1322 REMARK 3 L13: 0.5540 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.1037 S13: 0.0057 REMARK 3 S21: 0.1895 S22: -0.0924 S23: 0.0015 REMARK 3 S31: -0.1278 S32: 0.1338 S33: -0.0011 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4529 15.5157 31.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.3542 REMARK 3 T33: 0.4533 T12: -0.2055 REMARK 3 T13: -0.1232 T23: 0.1707 REMARK 3 L TENSOR REMARK 3 L11: 0.7777 L22: 0.9852 REMARK 3 L33: 0.3197 L12: -0.5821 REMARK 3 L13: 1.0722 L23: -0.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.2997 S12: 0.3723 S13: 0.3870 REMARK 3 S21: 0.1737 S22: -0.0466 S23: -0.4257 REMARK 3 S31: -0.0594 S32: 0.3834 S33: 0.0438 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8786 25.2711 7.8838 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.2724 REMARK 3 T33: 0.2496 T12: -0.0222 REMARK 3 T13: 0.0049 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.1415 L22: 0.7765 REMARK 3 L33: 0.9477 L12: 0.2590 REMARK 3 L13: 0.1038 L23: -0.2327 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: 0.1144 S13: 0.1014 REMARK 3 S21: 0.1727 S22: 0.0151 S23: 0.0948 REMARK 3 S31: -0.1199 S32: 0.0488 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0944 10.6358 19.9548 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.2655 REMARK 3 T33: 0.2793 T12: -0.0287 REMARK 3 T13: -0.0081 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.4008 L22: 0.5591 REMARK 3 L33: 0.3607 L12: -0.0842 REMARK 3 L13: -0.0046 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.2863 S13: 0.0612 REMARK 3 S21: 0.0766 S22: -0.1911 S23: 0.0406 REMARK 3 S31: -0.1292 S32: 0.0510 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.95900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.63050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.95900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.63050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 122.61 -26.25 REMARK 500 GLN A 85 157.35 -47.69 REMARK 500 MET A 184 -127.58 58.51 REMARK 500 ASP A 185 30.49 -96.48 REMARK 500 LYS A 287 36.49 -144.81 REMARK 500 LEU A 289 -19.35 -45.09 REMARK 500 THR B 69 -15.32 61.97 REMARK 500 PRO B 95 104.14 -59.93 REMARK 500 MET B 184 -117.90 49.79 REMARK 500 ARG B 284 106.50 -50.94 REMARK 500 THR B 286 61.37 -110.94 REMARK 500 LYS B 347 68.50 -112.14 REMARK 500 ARG B 356 34.09 -85.95 REMARK 500 MET B 357 99.97 -62.04 REMARK 500 ALA B 360 73.86 -156.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DX2 A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DX2 B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DX2 MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DX2 VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DX2 ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DX2 ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DX2 SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DX2 SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET T27 A 601 28 HET DMS A 602 4 HET DMS A 603 4 HET DMS A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET MG A 607 1 HET V06 A 608 8 HET V06 A 609 16 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HET DMS B 501 4 HET DMS B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET V06 B 505 8 HET V06 B 506 8 HET SO4 B 507 5 HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM V06 3-BROMOPYRIDIN-4-AMINE HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 T27 C22 H18 N6 FORMUL 4 DMS 5(C2 H6 O S) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 9 MG MG 2+ FORMUL 10 V06 4(C5 H5 BR N2) FORMUL 12 SO4 4(O4 S 2-) FORMUL 22 HOH *365(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 VAL A 111 PHE A 116 1 6 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 VAL A 254 SER A 268 1 15 HELIX 10 AB1 VAL A 276 LYS A 281 1 6 HELIX 11 AB2 LEU A 282 ARG A 284 5 3 HELIX 12 AB3 THR A 296 LEU A 310 1 15 HELIX 13 AB4 ASN A 363 GLY A 384 1 22 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 GLN A 507 1 9 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 GLY A 544 SER A 553 1 10 HELIX 19 AC1 THR B 27 GLU B 44 1 18 HELIX 20 AC2 PHE B 77 THR B 84 1 8 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 PHE B 124 ALA B 129 5 6 HELIX 24 AC6 SER B 134 GLU B 138 5 5 HELIX 25 AC7 LYS B 154 LEU B 168 1 15 HELIX 26 AC8 LEU B 168 ASN B 175 1 8 HELIX 27 AC9 GLU B 194 LEU B 214 1 21 HELIX 28 AD1 HIS B 235 TRP B 239 5 5 HELIX 29 AD2 VAL B 254 SER B 268 1 15 HELIX 30 AD3 VAL B 276 LYS B 281 1 6 HELIX 31 AD4 LEU B 282 ARG B 284 5 3 HELIX 32 AD5 THR B 296 LEU B 310 1 15 HELIX 33 AD6 ASN B 363 GLY B 384 1 22 HELIX 34 AD7 GLN B 394 TRP B 402 1 9 HELIX 35 AD8 THR B 403 TYR B 405 5 3 HELIX 36 AD9 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 ILE A 63 0 SHEET 2 AA2 2 ARG A 72 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 2 TRP A 252 THR A 253 0 SHEET 2 AA5 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 AA6 5 LYS A 347 ALA A 355 0 SHEET 2 AA6 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA6 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA6 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA6 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA7 2 HIS A 361 THR A 362 0 SHEET 2 AA7 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA8 5 GLN A 464 LEU A 469 0 SHEET 2 AA8 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 AA8 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA8 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA8 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AB1 2 VAL B 60 LYS B 64 0 SHEET 2 AB1 2 TRP B 71 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB2 4 VAL B 179 TYR B 183 0 SHEET 2 AB2 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB2 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB2 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB3 2 TRP B 252 THR B 253 0 SHEET 2 AB3 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB4 5 ASN B 348 TYR B 354 0 SHEET 2 AB4 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB4 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB4 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB4 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 498 MG MG A 607 1555 1555 2.93 CISPEP 1 PRO A 225 PRO A 226 0 9.21 CISPEP 2 PRO A 420 PRO A 421 0 1.05 CRYST1 161.918 73.261 109.247 90.00 100.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006176 0.000000 0.001131 0.00000 SCALE2 0.000000 0.013650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009306 0.00000