HEADER TRANSFERASE 02-AUG-22 8DXJ TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 1-N- TITLE 2 METHYL-4-(TRIFLUOROMETHYL)BENZENE-1,2-DIAMINE AT THE NNRTI ADJACENT TITLE 3 SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DXJ 1 REMARK REVDAT 1 31-MAY-23 8DXJ 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 113726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.770 REMARK 3 FREE R VALUE TEST SET COUNT : 3653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9400 - 5.3200 0.97 8441 153 0.1710 0.1780 REMARK 3 2 5.3200 - 4.2300 0.97 8337 153 0.1550 0.1652 REMARK 3 3 4.2300 - 3.6900 0.98 8520 156 0.1554 0.1735 REMARK 3 4 3.6900 - 3.3600 0.97 8475 153 0.1751 0.1661 REMARK 3 5 3.3600 - 3.1100 0.96 8293 155 0.1875 0.2342 REMARK 3 6 3.1100 - 2.9300 0.96 8265 149 0.2016 0.2552 REMARK 3 7 2.9300 - 2.7800 0.96 8315 149 0.1926 0.2107 REMARK 3 8 2.7800 - 2.6600 0.95 8240 139 0.1957 0.2617 REMARK 3 9 2.6600 - 2.5600 0.94 8159 149 0.1990 0.2111 REMARK 3 10 2.5600 - 2.4700 0.92 7921 144 0.1979 0.2419 REMARK 3 11 2.4700 - 2.4000 0.93 8073 147 0.1975 0.2337 REMARK 3 12 2.4000 - 2.3300 0.91 7876 146 0.1930 0.2135 REMARK 3 13 2.3300 - 2.2700 0.92 7879 139 0.1970 0.2128 REMARK 3 14 2.2700 - 2.2100 0.92 7975 141 0.1957 0.2161 REMARK 3 15 2.2100 - 2.1600 0.91 7847 143 0.2053 0.2215 REMARK 3 16 2.1600 - 2.1100 0.91 7848 139 0.2020 0.2540 REMARK 3 17 2.1100 - 2.0700 0.87 7548 130 0.2192 0.2592 REMARK 3 18 2.0700 - 2.0300 0.88 7589 144 0.2271 0.2764 REMARK 3 19 2.0300 - 2.0000 0.87 7599 134 0.2294 0.2480 REMARK 3 20 2.0000 - 1.9600 0.84 7239 134 0.2420 0.2599 REMARK 3 21 1.9600 - 1.9300 0.85 7316 133 0.2492 0.2439 REMARK 3 22 1.9300 - 1.9000 0.84 7278 131 0.2575 0.2850 REMARK 3 23 1.9000 - 1.8700 0.83 7196 130 0.2682 0.3039 REMARK 3 24 1.8700 - 1.8500 0.82 7129 125 0.2866 0.2931 REMARK 3 25 1.8500 - 1.8200 0.82 7042 124 0.3020 0.2849 REMARK 3 26 1.8200 - 1.8000 0.71 6154 113 0.3123 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8303 REMARK 3 ANGLE : 0.809 11286 REMARK 3 CHIRALITY : 0.055 1217 REMARK 3 PLANARITY : 0.004 1426 REMARK 3 DIHEDRAL : 16.564 3145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3415 -17.2997 64.3737 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.3070 REMARK 3 T33: 0.2520 T12: 0.0093 REMARK 3 T13: 0.0388 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.2588 L22: -0.0131 REMARK 3 L33: 1.0674 L12: 0.1071 REMARK 3 L13: -0.1601 L23: 0.2433 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: -0.1278 S13: -0.0948 REMARK 3 S21: 0.1016 S22: 0.0151 S23: 0.0904 REMARK 3 S31: 0.1641 S32: -0.0183 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0329 -25.9778 40.0376 REMARK 3 T TENSOR REMARK 3 T11: 0.3599 T22: 0.3193 REMARK 3 T33: 0.3691 T12: -0.0269 REMARK 3 T13: -0.0207 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 0.4169 L22: 0.8027 REMARK 3 L33: 0.8907 L12: 0.1352 REMARK 3 L13: 0.5605 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.3045 S12: -0.2629 S13: -0.3742 REMARK 3 S21: 0.2307 S22: 0.0389 S23: 0.0634 REMARK 3 S31: 0.2219 S32: -0.1497 S33: 0.0219 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1958 -3.6390 11.8413 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2730 REMARK 3 T33: 0.2782 T12: 0.0046 REMARK 3 T13: 0.0251 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8577 L22: 0.3685 REMARK 3 L33: 0.3771 L12: -0.4869 REMARK 3 L13: 0.6039 L23: -0.2645 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0945 S13: -0.1311 REMARK 3 S21: 0.0645 S22: 0.0965 S23: 0.1229 REMARK 3 S31: 0.0455 S32: -0.1277 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.2725 1.3723 36.7195 REMARK 3 T TENSOR REMARK 3 T11: 0.3069 T22: 0.3128 REMARK 3 T33: 0.2652 T12: -0.0360 REMARK 3 T13: -0.0047 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.6989 L22: 0.8213 REMARK 3 L33: 0.6229 L12: -0.2200 REMARK 3 L13: 0.5972 L23: -0.2822 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.0277 S13: 0.0716 REMARK 3 S21: 0.1689 S22: -0.0410 S23: 0.0020 REMARK 3 S31: -0.1088 S32: 0.1632 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7799 26.2105 33.7513 REMARK 3 T TENSOR REMARK 3 T11: 0.5971 T22: 0.3234 REMARK 3 T33: 0.7275 T12: -0.1041 REMARK 3 T13: -0.1515 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 0.1244 L22: 0.1982 REMARK 3 L33: 0.0850 L12: -0.1230 REMARK 3 L13: 0.0246 L23: 0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.4256 S12: 0.2693 S13: 0.5840 REMARK 3 S21: 0.1956 S22: 0.0638 S23: 0.0159 REMARK 3 S31: 0.0063 S32: 0.0413 S33: -0.0213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5551 13.6698 30.6972 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.4368 REMARK 3 T33: 0.4067 T12: -0.2223 REMARK 3 T13: -0.0624 T23: 0.1167 REMARK 3 L TENSOR REMARK 3 L11: 1.2976 L22: 1.0122 REMARK 3 L33: 0.5065 L12: -0.4741 REMARK 3 L13: 0.9664 L23: -0.2080 REMARK 3 S TENSOR REMARK 3 S11: -0.2336 S12: 0.4106 S13: 0.3824 REMARK 3 S21: 0.1638 S22: -0.0198 S23: -0.5136 REMARK 3 S31: -0.0971 S32: 0.5260 S33: -0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7932 25.0217 7.7521 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.2764 REMARK 3 T33: 0.2563 T12: -0.0324 REMARK 3 T13: 0.0136 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.3437 L22: 1.0863 REMARK 3 L33: 1.1917 L12: 0.2332 REMARK 3 L13: 0.5215 L23: -0.1486 REMARK 3 S TENSOR REMARK 3 S11: -0.1629 S12: 0.1444 S13: 0.1643 REMARK 3 S21: 0.1361 S22: 0.0217 S23: -0.0297 REMARK 3 S31: -0.1733 S32: 0.1213 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1929 10.0402 20.2208 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.2427 REMARK 3 T33: 0.2692 T12: -0.0223 REMARK 3 T13: 0.0038 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.4582 L22: 0.6316 REMARK 3 L33: 0.4369 L12: -0.0237 REMARK 3 L13: 0.1362 L23: -0.1999 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0979 S13: 0.0899 REMARK 3 S21: 0.0297 S22: -0.1160 S23: 0.0123 REMARK 3 S31: -0.0762 S32: 0.0114 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.12150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.40450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.12150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.40450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 176 2.09 -69.22 REMARK 500 MET A 184 -128.89 58.94 REMARK 500 LYS A 219 95.01 -62.20 REMARK 500 ILE A 270 -21.88 -145.75 REMARK 500 LYS A 287 42.85 -147.58 REMARK 500 GLU A 413 124.59 -38.81 REMARK 500 LYS B 66 107.90 -54.45 REMARK 500 ASP B 67 55.85 76.62 REMARK 500 GLN B 85 150.62 -48.25 REMARK 500 GLU B 89 -72.22 -62.39 REMARK 500 LEU B 92 50.29 -113.65 REMARK 500 MET B 184 -120.59 48.44 REMARK 500 LEU B 283 44.35 -89.36 REMARK 500 LYS B 347 73.66 -114.33 REMARK 500 ALA B 355 -24.83 -152.73 REMARK 500 ALA B 360 37.41 -149.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 88.2 REMARK 620 3 HOH A 742 O 89.9 82.6 REMARK 620 4 HOH A 784 O 171.2 83.4 86.2 REMARK 620 5 HOH A 891 O 103.7 167.1 92.4 84.4 REMARK 620 6 HOH A 898 O 96.1 92.5 172.2 87.1 91.1 REMARK 620 N 1 2 3 4 5 DBREF 8DXJ A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DXJ B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DXJ MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DXJ VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DXJ ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DXJ ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DXJ SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DXJ SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET T27 A 601 28 HET DMS A 602 4 HET DMS A 603 4 HET DMS A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET MG A 607 1 HET U43 A 608 13 HET SO4 A 609 5 HET SO4 A 610 5 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET EDO B 504 4 HET SO4 B 505 5 HET SO4 B 506 5 HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM U43 N~1~-METHYL-4-(TRIFLUOROMETHYL)BENZENE-1,2-DIAMINE HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 T27 C22 H18 N6 FORMUL 4 DMS 6(C2 H6 O S) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 MG MG 2+ FORMUL 10 U43 C8 H9 F3 N2 FORMUL 11 SO4 4(O4 S 2-) FORMUL 19 HOH *560(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 VAL A 111 PHE A 116 1 6 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 GLN A 174 1 20 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 282 1 7 HELIX 11 AB2 THR A 296 LEU A 310 1 15 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 SER A 489 1 17 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 GLY A 544 ALA A 554 1 11 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 THR B 84 1 8 HELIX 20 AC2 GLY B 99 LYS B 103 5 5 HELIX 21 AC3 GLY B 112 VAL B 118 5 7 HELIX 22 AC4 PHE B 124 ALA B 129 5 6 HELIX 23 AC5 SER B 134 GLU B 138 5 5 HELIX 24 AC6 LYS B 154 ASN B 175 1 22 HELIX 25 AC7 GLU B 194 LEU B 214 1 21 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 VAL B 254 SER B 268 1 15 HELIX 28 AD1 VAL B 276 LEU B 283 1 8 HELIX 29 AD2 THR B 296 LEU B 310 1 15 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 406 1 13 HELIX 32 AD5 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 AA7 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 LYS B 64 0 SHEET 2 AA9 2 TRP B 71 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 LYS B 347 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MG MG A 607 1555 1555 2.26 LINK OD1 ASP A 549 MG MG A 607 1555 1555 2.36 LINK MG MG A 607 O HOH A 742 1555 1555 2.23 LINK MG MG A 607 O HOH A 784 1555 1555 2.33 LINK MG MG A 607 O HOH A 891 1555 1555 2.26 LINK MG MG A 607 O HOH A 898 1555 1555 1.99 CISPEP 1 PRO A 225 PRO A 226 0 2.33 CISPEP 2 PRO A 420 PRO A 421 0 -4.69 CRYST1 162.243 72.809 109.454 90.00 100.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006164 0.000000 0.001144 0.00000 SCALE2 0.000000 0.013735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009292 0.00000