HEADER TRANSFERASE 02-AUG-22 8DXK
TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 4-
TITLE 2 BROMOPYRAZOLE AT MULTIPLE SITES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT;
COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: P51 RT;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES;
COMPND 12 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M
SOURCE 3 SUBTYPE B (ISOLATE BH10);
SOURCE 4 ORGANISM_COMMON: HIV-1;
SOURCE 5 ORGANISM_TAXID: 11678;
SOURCE 6 STRAIN: ISOLATE BH10;
SOURCE 7 GENE: GAG-POL;
SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 10 MOL_ID: 2;
SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1AHUMAN
SOURCE 12 IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE BH10);
SOURCE 13 ORGANISM_COMMON: HIV-1;
SOURCE 14 ORGANISM_TAXID: 11676;
SOURCE 15 STRAIN: ISOLATE BH10;
SOURCE 16 GENE: GAG-POL;
SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD
REVDAT 2 25-OCT-23 8DXK 1 REMARK
REVDAT 1 31-MAY-23 8DXK 0
JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD
JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND
JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT
JRNL TITL 3 SCREENING.
JRNL REF J.MED.CHEM. V. 66 6013 2023
JRNL REFN ISSN 0022-2623
JRNL PMID 37115705
JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_3051
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 85161
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.182
REMARK 3 R VALUE (WORKING SET) : 0.181
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.350
REMARK 3 FREE R VALUE TEST SET COUNT : 1999
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 38.0000 - 4.8100 1.00 6110 147 0.1664 0.1827
REMARK 3 2 4.8100 - 3.8200 1.00 6003 144 0.1425 0.1797
REMARK 3 3 3.8200 - 3.3400 1.00 5965 144 0.1592 0.1776
REMARK 3 4 3.3400 - 3.0300 1.00 5951 143 0.1769 0.1833
REMARK 3 5 3.0300 - 2.8200 1.00 5955 143 0.1863 0.2443
REMARK 3 6 2.8200 - 2.6500 1.00 5951 144 0.1988 0.2726
REMARK 3 7 2.6500 - 2.5200 1.00 5914 141 0.1959 0.2255
REMARK 3 8 2.5200 - 2.4100 1.00 5932 143 0.2008 0.2501
REMARK 3 9 2.4100 - 2.3200 1.00 5942 143 0.2071 0.2562
REMARK 3 10 2.3100 - 2.2400 1.00 5878 142 0.2176 0.2627
REMARK 3 11 2.2400 - 2.1700 1.00 5914 141 0.2289 0.2761
REMARK 3 12 2.1700 - 2.1000 1.00 5959 143 0.2381 0.2948
REMARK 3 13 2.1000 - 2.0500 1.00 5870 141 0.2475 0.2913
REMARK 3 14 2.0500 - 2.0000 0.98 5818 140 0.2656 0.3240
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.701
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.43
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 8382
REMARK 3 ANGLE : 1.222 11397
REMARK 3 CHIRALITY : 0.058 1218
REMARK 3 PLANARITY : 0.006 1476
REMARK 3 DIHEDRAL : 20.805 3197
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 40.9323 -1.3678 28.9142
REMARK 3 T TENSOR
REMARK 3 T11: 0.1707 T22: 0.1684
REMARK 3 T33: 0.1750 T12: -0.0166
REMARK 3 T13: 0.0324 T23: -0.0149
REMARK 3 L TENSOR
REMARK 3 L11: 0.3308 L22: 0.2649
REMARK 3 L33: 0.6999 L12: -0.1840
REMARK 3 L13: 0.4204 L23: -0.2753
REMARK 3 S TENSOR
REMARK 3 S11: -0.0048 S12: 0.0356 S13: -0.0135
REMARK 3 S21: 0.0989 S22: -0.0028 S23: 0.0275
REMARK 3 S31: -0.0600 S32: 0.0175 S33: -0.0050
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8DXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22.
REMARK 100 THE DEPOSITION ID IS D_1000267514.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-DEC-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.4-6.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85185
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.100
REMARK 200 R MERGE (I) : 0.18700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7
REMARK 200 DATA REDUNDANCY IN SHELL : 4.50
REMARK 200 R MERGE FOR SHELL (I) : 1.86300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 4G1Q
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.96
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM
REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP,
REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.23550
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.49150
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.23550
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.49150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 45570 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1004 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 555
REMARK 465 PRO B 1
REMARK 465 ILE B 2
REMARK 465 SER B 3
REMARK 465 PRO B 4
REMARK 465 THR B 215
REMARK 465 THR B 216
REMARK 465 PRO B 217
REMARK 465 ASP B 218
REMARK 465 LYS B 219
REMARK 465 LYS B 220
REMARK 465 HIS B 221
REMARK 465 GLN B 222
REMARK 465 LYS B 223
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU B 224 CG CD OE1 OE2
REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 92 30.36 -63.93
REMARK 500 MET A 184 -120.93 48.65
REMARK 500 LYS A 219 105.15 -53.07
REMARK 500 ILE A 270 -20.83 -141.95
REMARK 500 ASP B 67 49.97 78.51
REMARK 500 GLN B 85 152.61 -46.10
REMARK 500 MET B 184 -121.96 51.87
REMARK 500 ARG B 284 -57.22 170.05
REMARK 500 THR B 286 74.84 -106.26
REMARK 500 THR B 296 -175.88 -69.84
REMARK 500 LYS B 347 74.10 -116.92
REMARK 500 ALA B 355 -18.62 -143.90
REMARK 500 MET B 357 107.41 -51.33
REMARK 500 ALA B 360 25.53 -147.93
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 864 DISTANCE = 6.28 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 605 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 443 OD2
REMARK 620 2 ASP A 549 OD1 76.3
REMARK 620 3 HOH A 767 O 82.3 82.8
REMARK 620 4 HOH A 814 O 78.3 86.0 159.4
REMARK 620 5 HOH A 928 O 97.8 169.6 105.0 84.4
REMARK 620 6 HOH A 991 O 154.7 89.8 117.3 79.7 92.4
REMARK 620 N 1 2 3 4 5
DBREF 8DXK A 1 555 UNP P03366 POL_HV1B1 600 1154
DBREF 8DXK B 1 428 UNP P03366 POL_HV1B1 600 1027
SEQADV 8DXK MET A -1 UNP P03366 EXPRESSION TAG
SEQADV 8DXK VAL A 0 UNP P03366 EXPRESSION TAG
SEQADV 8DXK ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION
SEQADV 8DXK ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION
SEQADV 8DXK SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION
SEQADV 8DXK SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION
SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS
SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP
SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE
SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE
SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE
SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP
SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU
SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS
SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR
SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR
SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY
SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS
SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE
SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE
SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU
SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG
SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS
SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR
SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL
SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN
SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR
SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG
SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU
SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU
SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS
SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN
SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU
SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR
SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE
SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS
SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP
SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP
SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR
SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE
SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY
SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL
SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU
SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU
SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE
SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL
SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL
SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY
SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY
SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS
SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU
SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR
SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO
SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS
SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG
SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN
SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS
SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER
SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE
SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG
SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER
SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU
SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN
SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE
SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS
SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS
SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU
SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO
SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU
SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY
SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR
SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA
SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU
SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU
SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR
SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR
SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP
SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR
SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS
SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR
SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE
SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN
HET T27 A 601 28
HET DMS A 602 4
HET EDO A 603 4
HET EDO A 604 4
HET MG A 605 1
HET SO4 A 606 5
HET SO4 A 607 5
HET SO4 A 608 5
HET BYZ A 609 6
HET BYZ A 610 6
HET BYZ A 611 6
HET BYZ A 612 6
HET BYZ A 613 6
HET DMS B 501 4
HET DMS B 502 4
HET DMS B 503 4
HET DMS B 504 4
HET DMS B 505 4
HET EDO B 506 4
HET SO4 B 507 5
HET BYZ B 508 6
HET BYZ B 509 6
HET BYZ B 510 6
HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6-
HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM MG MAGNESIUM ION
HETNAM SO4 SULFATE ION
HETNAM BYZ 4-BROMO-1H-PYRAZOLE
HETSYN T27 RILPIVIRINE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 T27 C22 H18 N6
FORMUL 4 DMS 6(C2 H6 O S)
FORMUL 5 EDO 3(C2 H6 O2)
FORMUL 7 MG MG 2+
FORMUL 8 SO4 4(O4 S 2-)
FORMUL 11 BYZ 8(C3 H3 BR N2)
FORMUL 26 HOH *659(H2 O)
HELIX 1 AA1 THR A 27 GLU A 44 1 18
HELIX 2 AA2 PHE A 77 THR A 84 1 8
HELIX 3 AA3 HIS A 96 LEU A 100 5 5
HELIX 4 AA4 VAL A 111 PHE A 116 1 6
HELIX 5 AA5 ASP A 121 ALA A 129 5 9
HELIX 6 AA6 SER A 134 GLU A 138 5 5
HELIX 7 AA7 GLY A 155 GLN A 174 1 20
HELIX 8 AA8 GLU A 194 ARG A 211 1 18
HELIX 9 AA9 THR A 253 SER A 268 1 16
HELIX 10 AB1 VAL A 276 LYS A 281 1 6
HELIX 11 AB2 LEU A 282 ARG A 284 5 3
HELIX 12 AB3 THR A 296 LEU A 310 1 15
HELIX 13 AB4 ASN A 363 GLY A 384 1 22
HELIX 14 AB5 GLN A 394 TYR A 405 1 12
HELIX 15 AB6 THR A 473 SER A 489 1 17
HELIX 16 AB7 SER A 499 ALA A 508 1 10
HELIX 17 AB8 SER A 515 LYS A 528 1 14
HELIX 18 AB9 GLY A 544 SER A 553 1 10
HELIX 19 AC1 THR B 27 GLU B 44 1 18
HELIX 20 AC2 PHE B 77 THR B 84 1 8
HELIX 21 AC3 GLY B 99 LYS B 103 5 5
HELIX 22 AC4 GLY B 112 VAL B 118 5 7
HELIX 23 AC5 PHE B 124 ALA B 129 5 6
HELIX 24 AC6 SER B 134 GLU B 138 5 5
HELIX 25 AC7 LYS B 154 LEU B 168 1 15
HELIX 26 AC8 LEU B 168 ASN B 175 1 8
HELIX 27 AC9 GLU B 194 LEU B 214 1 21
HELIX 28 AD1 HIS B 235 TRP B 239 5 5
HELIX 29 AD2 VAL B 254 SER B 268 1 15
HELIX 30 AD3 VAL B 276 LYS B 281 1 6
HELIX 31 AD4 THR B 296 LEU B 310 1 15
HELIX 32 AD5 ASN B 363 GLY B 384 1 22
HELIX 33 AD6 GLN B 394 TRP B 406 1 13
HELIX 34 AD7 VAL B 423 GLN B 428 1 6
SHEET 1 AA1 3 ILE A 47 LYS A 49 0
SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48
SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142
SHEET 1 AA2 2 VAL A 60 LYS A 64 0
SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61
SHEET 1 AA3 3 SER A 105 ASP A 110 0
SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107
SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188
SHEET 1 AA4 3 PHE A 227 TRP A 229 0
SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227
SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233
SHEET 1 AA5 5 LYS A 347 ALA A 355 0
SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LEU A 349
SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N GLN A 332 O GLN A 336
SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327
SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391
SHEET 1 AA6 2 HIS A 361 THR A 362 0
SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362
SHEET 1 AA7 5 GLN A 464 LEU A 469 0
SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469
SHEET 3 AA7 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458
SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440
SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495
SHEET 1 AA8 3 ILE B 47 LYS B 49 0
SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48
SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142
SHEET 1 AA9 2 VAL B 60 ILE B 63 0
SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63
SHEET 1 AB1 4 VAL B 179 TYR B 183 0
SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181
SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187
SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106
SHEET 1 AB2 2 TRP B 252 THR B 253 0
SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252
SHEET 1 AB3 5 LYS B 347 TYR B 354 0
SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350
SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342
SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327
SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391
LINK OD2 ASP A 443 MG MG A 605 1555 1555 2.87
LINK OD1 ASP A 549 MG MG A 605 1555 1555 2.48
LINK MG MG A 605 O HOH A 767 1555 1555 2.32
LINK MG MG A 605 O HOH A 814 1555 1555 2.27
LINK MG MG A 605 O HOH A 928 1555 1555 2.19
LINK MG MG A 605 O HOH A 991 1555 1555 2.24
CISPEP 1 PRO A 225 PRO A 226 0 2.89
CISPEP 2 PRO A 420 PRO A 421 0 -1.46
CRYST1 162.471 72.983 109.316 90.00 100.69 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006155 0.000000 0.001161 0.00000
SCALE2 0.000000 0.013702 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009309 0.00000