HEADER ISOMERASE 04-AUG-22 8DYJ TITLE CRYSTAL STRUCTURE OF HUMAN METHYLMALONYL-COA MUTASE IN COMPLEX WITH TITLE 2 ADP AND COB(II)ALAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLMALONYL-COA MUTASE, MITOCHONDRIAL; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MCM,METHYLMALONYL-COA ISOMERASE; COMPND 5 EC: 5.4.99.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMUT, MUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COBALAMIN, ADP, MUTASE, VITAMIN B12, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.N.MASCARENHAS,H.GOUDA,R.BANERJEE REVDAT 3 25-OCT-23 8DYJ 1 REMARK REVDAT 2 23-AUG-23 8DYJ 1 JRNL REVDAT 1 12-JUL-23 8DYJ 0 JRNL AUTH H.GOUDA,R.MASCARENHAS,M.RUETZ,M.YAW,R.BANERJEE JRNL TITL BIVALENT MOLECULAR MIMICRY BY ADP PROTECTS METAL REDOX STATE JRNL TITL 2 AND PROMOTES COENZYME B 12 REPAIR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 77120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36888659 JRNL DOI 10.1073/PNAS.2220677120 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 37922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1050 - 5.3001 0.97 2686 151 0.1813 0.2026 REMARK 3 2 5.3001 - 4.2077 1.00 2643 135 0.1622 0.1997 REMARK 3 3 4.2077 - 3.6760 1.00 2652 132 0.1708 0.1749 REMARK 3 4 3.6760 - 3.3400 1.00 2616 126 0.1969 0.2334 REMARK 3 5 3.3400 - 3.1007 0.98 2491 165 0.2205 0.2408 REMARK 3 6 3.1007 - 2.9179 1.00 2589 142 0.2312 0.2712 REMARK 3 7 2.9179 - 2.7718 1.00 2566 143 0.2199 0.2577 REMARK 3 8 2.7718 - 2.6511 1.00 2561 133 0.2218 0.2418 REMARK 3 9 2.6511 - 2.5491 1.00 2542 143 0.2168 0.3060 REMARK 3 10 2.5491 - 2.4611 0.99 2580 140 0.2241 0.2708 REMARK 3 11 2.4611 - 2.3842 0.99 2570 117 0.2364 0.2887 REMARK 3 12 2.3842 - 2.3160 1.00 2579 125 0.2488 0.2715 REMARK 3 13 2.3160 - 2.2551 0.99 2539 128 0.2511 0.3118 REMARK 3 14 2.2551 - 2.2000 0.94 2406 122 0.2739 0.3324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0753 -8.9613 7.3058 REMARK 3 T TENSOR REMARK 3 T11: 0.5225 T22: 0.6671 REMARK 3 T33: 0.7554 T12: -0.1240 REMARK 3 T13: 0.1899 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 0.6774 L22: 5.6636 REMARK 3 L33: 1.5024 L12: 1.7365 REMARK 3 L13: 0.8138 L23: 1.3729 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.1122 S13: -0.1091 REMARK 3 S21: 0.1862 S22: -0.3476 S23: 0.8247 REMARK 3 S31: 0.3490 S32: -0.6346 S33: 0.2401 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0860 13.5994 17.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.3773 REMARK 3 T33: 0.4276 T12: -0.0707 REMARK 3 T13: 0.0685 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.0364 L22: 1.6428 REMARK 3 L33: 1.9006 L12: -0.2812 REMARK 3 L13: 0.1293 L23: 0.4111 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.1259 S13: 0.2138 REMARK 3 S21: 0.2451 S22: -0.1557 S23: 0.2224 REMARK 3 S31: -0.2571 S32: 0.0386 S33: 0.1191 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 444 THROUGH 557 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8856 14.8508 27.5023 REMARK 3 T TENSOR REMARK 3 T11: 0.4520 T22: 0.5690 REMARK 3 T33: 0.4153 T12: -0.0748 REMARK 3 T13: -0.0877 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.0878 L22: 5.7553 REMARK 3 L33: 2.6061 L12: 0.5066 REMARK 3 L13: -0.0880 L23: 1.0927 REMARK 3 S TENSOR REMARK 3 S11: 0.1302 S12: -0.2709 S13: 0.2431 REMARK 3 S21: 0.4613 S22: -0.1278 S23: -0.0636 REMARK 3 S31: -0.4523 S32: 0.3530 S33: -0.0335 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 558 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7647 -6.7965 33.1209 REMARK 3 T TENSOR REMARK 3 T11: 0.7138 T22: 0.6570 REMARK 3 T33: 0.3251 T12: 0.0444 REMARK 3 T13: -0.0441 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.2447 L22: 3.4816 REMARK 3 L33: 2.1172 L12: 0.1566 REMARK 3 L13: -0.1100 L23: 0.8385 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.1237 S13: -0.0698 REMARK 3 S21: 0.6569 S22: 0.1027 S23: -0.4212 REMARK 3 S31: 0.5376 S32: 0.5928 S33: -0.1126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1272 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.105 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XIQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE, 54% PEG 400, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.21100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.21100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.51250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.67900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.51250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.67900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.21100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.51250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.67900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.21100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.51250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.67900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -26 REMARK 465 SER B -25 REMARK 465 PRO B -24 REMARK 465 HIS B -23 REMARK 465 TYR B -22 REMARK 465 LEU B -21 REMARK 465 ARG B -20 REMARK 465 GLN B -19 REMARK 465 VAL B -18 REMARK 465 LYS B -17 REMARK 465 GLU B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 ARG B -11 REMARK 465 LEU B -10 REMARK 465 ILE B -9 REMARK 465 GLN B -8 REMARK 465 GLN B -7 REMARK 465 ARG B -6 REMARK 465 LEU B -5 REMARK 465 LEU B -4 REMARK 465 HIS B -3 REMARK 465 GLN B -2 REMARK 465 GLN B -1 REMARK 465 LYS B 708 REMARK 465 LYS B 709 REMARK 465 GLN B 710 REMARK 465 GLN B 711 REMARK 465 SER B 712 REMARK 465 VAL B 713 REMARK 465 ALA B 714 REMARK 465 GLU B 715 REMARK 465 ASN B 716 REMARK 465 LEU B 717 REMARK 465 TYR B 718 REMARK 465 PHE B 719 REMARK 465 GLN B 720 REMARK 465 SER B 721 REMARK 465 HIS B 722 REMARK 465 HIS B 723 REMARK 465 HIS B 724 REMARK 465 HIS B 725 REMARK 465 HIS B 726 REMARK 465 HIS B 727 REMARK 465 ASP B 728 REMARK 465 TYR B 729 REMARK 465 LYS B 730 REMARK 465 ASP B 731 REMARK 465 ASP B 732 REMARK 465 ASP B 733 REMARK 465 ASP B 734 REMARK 465 LYS B 735 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 0 CG CD OE1 NE2 REMARK 470 LYS B 17 CD CE NZ REMARK 470 MET B 42 CG SD CE REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 LYS B 459 CD CE NZ REMARK 470 GLU B 479 CG CD OE1 OE2 REMARK 470 LYS B 483 CG CD CE NZ REMARK 470 GLU B 502 CG CD OE1 OE2 REMARK 470 ASP B 508 CG OD1 OD2 REMARK 470 MET B 545 CG SD CE REMARK 470 LYS B 558 CG CD CE NZ REMARK 470 ARG B 576 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 579 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 650 CE NZ REMARK 470 GLU B 678 CG CD OE1 OE2 REMARK 470 LYS B 693 CE NZ REMARK 470 LYS B 704 CE NZ REMARK 470 GLU B 707 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 1 -168.19 -74.12 REMARK 500 PRO B 53 30.56 -87.33 REMARK 500 MET B 62 -109.29 53.75 REMARK 500 PHE B 76 147.49 -170.04 REMARK 500 SER B 77 -129.12 55.90 REMARK 500 ASN B 152 -50.26 -139.07 REMARK 500 ALA B 154 43.13 -85.97 REMARK 500 VAL B 190 -53.14 -133.89 REMARK 500 ILE B 195 -62.94 -126.33 REMARK 500 ASP B 354 35.71 -89.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 B12 B 801 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 590 NE2 REMARK 620 2 B12 B 801 N21 91.2 REMARK 620 3 B12 B 801 N22 81.1 91.8 REMARK 620 4 B12 B 801 N23 92.9 171.1 96.6 REMARK 620 5 B12 B 801 N24 108.3 82.4 169.0 88.8 REMARK 620 N 1 2 3 4 DBREF 8DYJ B -25 713 UNP P22033 MUTA_HUMAN 12 750 SEQADV 8DYJ MET B -26 UNP P22033 INITIATING METHIONINE SEQADV 8DYJ THR B 462 UNP P22033 ALA 499 CONFLICT SEQADV 8DYJ VAL B 634 UNP P22033 ILE 671 CONFLICT SEQADV 8DYJ ALA B 714 UNP P22033 EXPRESSION TAG SEQADV 8DYJ GLU B 715 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASN B 716 UNP P22033 EXPRESSION TAG SEQADV 8DYJ LEU B 717 UNP P22033 EXPRESSION TAG SEQADV 8DYJ TYR B 718 UNP P22033 EXPRESSION TAG SEQADV 8DYJ PHE B 719 UNP P22033 EXPRESSION TAG SEQADV 8DYJ GLN B 720 UNP P22033 EXPRESSION TAG SEQADV 8DYJ SER B 721 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 722 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 723 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 724 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 725 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 726 UNP P22033 EXPRESSION TAG SEQADV 8DYJ HIS B 727 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASP B 728 UNP P22033 EXPRESSION TAG SEQADV 8DYJ TYR B 729 UNP P22033 EXPRESSION TAG SEQADV 8DYJ LYS B 730 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASP B 731 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASP B 732 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASP B 733 UNP P22033 EXPRESSION TAG SEQADV 8DYJ ASP B 734 UNP P22033 EXPRESSION TAG SEQADV 8DYJ LYS B 735 UNP P22033 EXPRESSION TAG SEQRES 1 B 762 MET SER PRO HIS TYR LEU ARG GLN VAL LYS GLU SER SER SEQRES 2 B 762 GLY SER ARG LEU ILE GLN GLN ARG LEU LEU HIS GLN GLN SEQRES 3 B 762 GLN PRO LEU HIS PRO GLU TRP ALA ALA LEU ALA LYS LYS SEQRES 4 B 762 GLN LEU LYS GLY LYS ASN PRO GLU ASP LEU ILE TRP HIS SEQRES 5 B 762 THR PRO GLU GLY ILE SER ILE LYS PRO LEU TYR SER LYS SEQRES 6 B 762 ARG ASP THR MET ASP LEU PRO GLU GLU LEU PRO GLY VAL SEQRES 7 B 762 LYS PRO PHE THR ARG GLY PRO TYR PRO THR MET TYR THR SEQRES 8 B 762 PHE ARG PRO TRP THR ILE ARG GLN TYR ALA GLY PHE SER SEQRES 9 B 762 THR VAL GLU GLU SER ASN LYS PHE TYR LYS ASP ASN ILE SEQRES 10 B 762 LYS ALA GLY GLN GLN GLY LEU SER VAL ALA PHE ASP LEU SEQRES 11 B 762 ALA THR HIS ARG GLY TYR ASP SER ASP ASN PRO ARG VAL SEQRES 12 B 762 ARG GLY ASP VAL GLY MET ALA GLY VAL ALA ILE ASP THR SEQRES 13 B 762 VAL GLU ASP THR LYS ILE LEU PHE ASP GLY ILE PRO LEU SEQRES 14 B 762 GLU LYS MET SER VAL SER MET THR MET ASN GLY ALA VAL SEQRES 15 B 762 ILE PRO VAL LEU ALA ASN PHE ILE VAL THR GLY GLU GLU SEQRES 16 B 762 GLN GLY VAL PRO LYS GLU LYS LEU THR GLY THR ILE GLN SEQRES 17 B 762 ASN ASP ILE LEU LYS GLU PHE MET VAL ARG ASN THR TYR SEQRES 18 B 762 ILE PHE PRO PRO GLU PRO SER MET LYS ILE ILE ALA ASP SEQRES 19 B 762 ILE PHE GLU TYR THR ALA LYS HIS MET PRO LYS PHE ASN SEQRES 20 B 762 SER ILE SER ILE SER GLY TYR HIS MET GLN GLU ALA GLY SEQRES 21 B 762 ALA ASP ALA ILE LEU GLU LEU ALA TYR THR LEU ALA ASP SEQRES 22 B 762 GLY LEU GLU TYR SER ARG THR GLY LEU GLN ALA GLY LEU SEQRES 23 B 762 THR ILE ASP GLU PHE ALA PRO ARG LEU SER PHE PHE TRP SEQRES 24 B 762 GLY ILE GLY MET ASN PHE TYR MET GLU ILE ALA LYS MET SEQRES 25 B 762 ARG ALA GLY ARG ARG LEU TRP ALA HIS LEU ILE GLU LYS SEQRES 26 B 762 MET PHE GLN PRO LYS ASN SER LYS SER LEU LEU LEU ARG SEQRES 27 B 762 ALA HIS CYS GLN THR SER GLY TRP SER LEU THR GLU GLN SEQRES 28 B 762 ASP PRO TYR ASN ASN ILE VAL ARG THR ALA ILE GLU ALA SEQRES 29 B 762 MET ALA ALA VAL PHE GLY GLY THR GLN SER LEU HIS THR SEQRES 30 B 762 ASN SER PHE ASP GLU ALA LEU GLY LEU PRO THR VAL LYS SEQRES 31 B 762 SER ALA ARG ILE ALA ARG ASN THR GLN ILE ILE ILE GLN SEQRES 32 B 762 GLU GLU SER GLY ILE PRO LYS VAL ALA ASP PRO TRP GLY SEQRES 33 B 762 GLY SER TYR MET MET GLU CYS LEU THR ASN ASP VAL TYR SEQRES 34 B 762 ASP ALA ALA LEU LYS LEU ILE ASN GLU ILE GLU GLU MET SEQRES 35 B 762 GLY GLY MET ALA LYS ALA VAL ALA GLU GLY ILE PRO LYS SEQRES 36 B 762 LEU ARG ILE GLU GLU CYS ALA ALA ARG ARG GLN ALA ARG SEQRES 37 B 762 ILE ASP SER GLY SER GLU VAL ILE VAL GLY VAL ASN LYS SEQRES 38 B 762 TYR GLN LEU GLU LYS GLU ASP THR VAL GLU VAL LEU ALA SEQRES 39 B 762 ILE ASP ASN THR SER VAL ARG ASN ARG GLN ILE GLU LYS SEQRES 40 B 762 LEU LYS LYS ILE LYS SER SER ARG ASP GLN ALA LEU ALA SEQRES 41 B 762 GLU ARG CYS LEU ALA ALA LEU THR GLU CYS ALA ALA SER SEQRES 42 B 762 GLY ASP GLY ASN ILE LEU ALA LEU ALA VAL ASP ALA SER SEQRES 43 B 762 ARG ALA ARG CYS THR VAL GLY GLU ILE THR ASP ALA LEU SEQRES 44 B 762 LYS LYS VAL PHE GLY GLU HIS LYS ALA ASN ASP ARG MET SEQRES 45 B 762 VAL SER GLY ALA TYR ARG GLN GLU PHE GLY GLU SER LYS SEQRES 46 B 762 GLU ILE THR SER ALA ILE LYS ARG VAL HIS LYS PHE MET SEQRES 47 B 762 GLU ARG GLU GLY ARG ARG PRO ARG LEU LEU VAL ALA LYS SEQRES 48 B 762 MET GLY GLN ASP GLY HIS ASP ARG GLY ALA LYS VAL ILE SEQRES 49 B 762 ALA THR GLY PHE ALA ASP LEU GLY PHE ASP VAL ASP ILE SEQRES 50 B 762 GLY PRO LEU PHE GLN THR PRO ARG GLU VAL ALA GLN GLN SEQRES 51 B 762 ALA VAL ASP ALA ASP VAL HIS ALA VAL GLY VAL SER THR SEQRES 52 B 762 LEU ALA ALA GLY HIS LYS THR LEU VAL PRO GLU LEU ILE SEQRES 53 B 762 LYS GLU LEU ASN SER LEU GLY ARG PRO ASP ILE LEU VAL SEQRES 54 B 762 MET CYS GLY GLY VAL ILE PRO PRO GLN ASP TYR GLU PHE SEQRES 55 B 762 LEU PHE GLU VAL GLY VAL SER ASN VAL PHE GLY PRO GLY SEQRES 56 B 762 THR ARG ILE PRO LYS ALA ALA VAL GLN VAL LEU ASP ASP SEQRES 57 B 762 ILE GLU LYS CYS LEU GLU LYS LYS GLN GLN SER VAL ALA SEQRES 58 B 762 GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS HIS HIS SEQRES 59 B 762 ASP TYR LYS ASP ASP ASP ASP LYS HET B12 B 801 91 HET ADP B 802 27 HETNAM B12 COBALAMIN HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 B12 C62 H89 CO N13 O14 P 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *121(H2 O) HELIX 1 AA1 HIS B 3 LEU B 14 1 12 HELIX 2 AA2 ASN B 18 ILE B 23 5 6 HELIX 3 AA3 SER B 37 MET B 42 5 6 HELIX 4 AA4 THR B 78 ALA B 92 1 15 HELIX 5 AA5 ASP B 102 ARG B 107 1 6 HELIX 6 AA6 ASN B 113 ARG B 117 5 5 HELIX 7 AA7 THR B 129 PHE B 137 1 9 HELIX 8 AA8 ALA B 154 GLN B 169 1 16 HELIX 9 AA9 PRO B 172 LEU B 176 5 5 HELIX 10 AB1 ILE B 184 VAL B 190 1 7 HELIX 11 AB2 PRO B 197 MET B 216 1 20 HELIX 12 AB3 GLY B 226 GLY B 233 1 8 HELIX 13 AB4 ASP B 235 ALA B 257 1 23 HELIX 14 AB5 THR B 260 ALA B 265 1 6 HELIX 15 AB6 ASN B 277 GLN B 301 1 25 HELIX 16 AB7 ASN B 304 LEU B 309 5 6 HELIX 17 AB8 GLY B 318 LEU B 321 5 4 HELIX 18 AB9 TYR B 327 GLY B 343 1 17 HELIX 19 AC1 THR B 361 GLU B 378 1 18 HELIX 20 AC2 GLY B 380 VAL B 384 5 5 HELIX 21 AC3 SER B 391 GLY B 416 1 26 HELIX 22 AC4 GLY B 417 GLU B 424 1 8 HELIX 23 AC5 GLY B 425 SER B 444 1 20 HELIX 24 AC6 ASP B 469 ARG B 488 1 20 HELIX 25 AC7 ASP B 489 GLY B 507 1 19 HELIX 26 AC8 ASN B 510 ALA B 521 1 12 HELIX 27 AC9 THR B 524 GLY B 537 1 14 HELIX 28 AD1 GLY B 548 GLY B 555 1 8 HELIX 29 AD2 SER B 557 GLY B 575 1 19 HELIX 30 AD3 ASP B 591 LEU B 604 1 14 HELIX 31 AD4 THR B 616 ASP B 628 1 13 HELIX 32 AD5 GLY B 640 LEU B 655 1 16 HELIX 33 AD6 PRO B 669 GLN B 671 5 3 HELIX 34 AD7 ASP B 672 GLY B 680 1 9 HELIX 35 AD8 ARG B 690 LEU B 706 1 17 SHEET 1 AA1 2 TRP B 24 HIS B 25 0 SHEET 2 AA1 2 SER B 31 ILE B 32 -1 O ILE B 32 N TRP B 24 SHEET 1 AA2 9 PHE B 219 ASN B 220 0 SHEET 2 AA2 9 GLY B 178 ILE B 180 1 N GLY B 178 O ASN B 220 SHEET 3 AA2 9 VAL B 147 MET B 149 1 N MET B 149 O THR B 179 SHEET 4 AA2 9 GLY B 96 VAL B 99 1 N VAL B 99 O SER B 148 SHEET 5 AA2 9 THR B 69 ALA B 74 1 N ALA B 74 O SER B 98 SHEET 6 AA2 9 SER B 347 HIS B 349 1 O LEU B 348 N THR B 69 SHEET 7 AA2 9 ALA B 312 THR B 316 1 N CYS B 314 O HIS B 349 SHEET 8 AA2 9 LEU B 268 ILE B 274 1 N PHE B 270 O HIS B 313 SHEET 9 AA2 9 ILE B 222 SER B 225 1 N ILE B 224 O SER B 269 SHEET 1 AA3 5 ASP B 607 ILE B 610 0 SHEET 2 AA3 5 ARG B 579 ALA B 583 1 N LEU B 580 O ASP B 607 SHEET 3 AA3 5 ALA B 631 SER B 635 1 O GLY B 633 N LEU B 581 SHEET 4 AA3 5 LEU B 661 GLY B 665 1 O MET B 663 N VAL B 634 SHEET 5 AA3 5 ASN B 683 PHE B 685 1 O ASN B 683 N CYS B 664 LINK NE2 HIS B 590 CO B12 B 801 1555 1555 2.26 CISPEP 1 LYS B 52 PRO B 53 0 0.55 CRYST1 61.025 129.358 188.422 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005307 0.00000