HEADER SIGNALING PROTEIN 08-AUG-22 8DZM TITLE CRYSTAL STRUCTURE OF HUMAN SAR1A IN COMPLEX WITH PPGPP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN SAR1A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COPII-ASSOCIATED SMALL GTPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAR1A, SAR1, SARA, SARA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SAR1A, PPGPP, COPII, SMALL GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUANG REVDAT 2 28-FEB-24 8DZM 1 JRNL REVDAT 1 16-AUG-23 8DZM 0 JRNL AUTH Q.HUANG,D.M.E.SZEBENYI JRNL TITL THE ALARMONE PPGPP SELECTIVELY INHIBITS THE ISOFORM A OF THE JRNL TITL 2 HUMAN SMALL GTPASE SAR1. JRNL REF PROTEINS V. 91 518 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 36369712 JRNL DOI 10.1002/PROT.26445 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 43801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.570 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4100 - 3.9702 0.97 3071 147 0.1788 0.1730 REMARK 3 2 3.9702 - 3.1515 0.99 3053 146 0.1468 0.1898 REMARK 3 3 3.1515 - 2.7532 1.00 3006 144 0.1633 0.1993 REMARK 3 4 2.7532 - 2.5015 1.00 3023 145 0.1666 0.2043 REMARK 3 5 2.5015 - 2.3222 1.00 3021 144 0.1663 0.1944 REMARK 3 6 2.3222 - 2.1853 1.00 3001 144 0.1577 0.1797 REMARK 3 7 2.1853 - 2.0759 1.00 2997 143 0.1587 0.1917 REMARK 3 8 2.0759 - 1.9855 1.00 2978 142 0.1582 0.1995 REMARK 3 9 1.9855 - 1.9091 1.00 2969 143 0.1705 0.2100 REMARK 3 10 1.9091 - 1.8432 1.00 3041 145 0.1843 0.2009 REMARK 3 11 1.8432 - 1.7855 1.00 2948 141 0.1906 0.2291 REMARK 3 12 1.7855 - 1.7345 1.00 3011 144 0.2083 0.2455 REMARK 3 13 1.7345 - 1.6888 1.00 2951 142 0.2303 0.2748 REMARK 3 14 1.6888 - 1.6480 0.92 2731 130 0.2687 0.2963 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2811 REMARK 3 ANGLE : 0.956 3823 REMARK 3 CHIRALITY : 0.056 441 REMARK 3 PLANARITY : 0.004 469 REMARK 3 DIHEDRAL : 18.224 1648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 279.0786 40.5314 92.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.2017 REMARK 3 T33: 0.1648 T12: -0.0190 REMARK 3 T13: -0.0093 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.7252 L22: 4.0227 REMARK 3 L33: 8.6277 L12: 1.2356 REMARK 3 L13: 2.6726 L23: 1.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.3852 S12: -0.2811 S13: -0.0841 REMARK 3 S21: 0.4739 S22: -0.1438 S23: -0.2620 REMARK 3 S31: 0.3653 S32: 0.2059 S33: -0.2279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 280.8248 42.3297 77.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.1683 REMARK 3 T33: 0.1452 T12: 0.0034 REMARK 3 T13: 0.0149 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 7.7091 L22: 4.6021 REMARK 3 L33: 7.8800 L12: -2.9452 REMARK 3 L13: 6.0994 L23: -4.1136 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: 0.1638 S13: -0.0242 REMARK 3 S21: 0.0816 S22: 0.0273 S23: -0.1688 REMARK 3 S31: -0.2751 S32: 0.2895 S33: 0.0423 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 283.8038 35.1959 85.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.1896 REMARK 3 T33: 0.2259 T12: -0.0017 REMARK 3 T13: -0.0076 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 9.3178 L22: 3.0605 REMARK 3 L33: 2.0960 L12: -0.8061 REMARK 3 L13: 2.3778 L23: -1.0977 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: 0.4261 S13: -0.1115 REMARK 3 S21: -0.0935 S22: 0.2505 S23: -0.3006 REMARK 3 S31: 0.0893 S32: 0.5290 S33: -0.4887 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 272.5517 30.1051 80.5465 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.2211 REMARK 3 T33: 0.3375 T12: 0.0090 REMARK 3 T13: 0.0137 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.6935 L22: 5.9427 REMARK 3 L33: 2.2703 L12: -0.2662 REMARK 3 L13: -2.3259 L23: -1.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.2721 S12: -0.0347 S13: -0.7278 REMARK 3 S21: -0.2133 S22: -0.0797 S23: 0.2203 REMARK 3 S31: 1.2492 S32: 0.3382 S33: 0.2793 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 267.4672 43.3867 73.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.1543 REMARK 3 T33: 0.1752 T12: 0.0433 REMARK 3 T13: -0.0044 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.2904 L22: 2.2604 REMARK 3 L33: 4.4821 L12: 1.4081 REMARK 3 L13: -0.4236 L23: -1.3702 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: 0.1188 S13: -0.0408 REMARK 3 S21: -0.0890 S22: 0.0085 S23: 0.1856 REMARK 3 S31: 0.0054 S32: -0.1764 S33: -0.0933 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 269.0286 45.2089 79.5456 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.1342 REMARK 3 T33: 0.1047 T12: 0.0344 REMARK 3 T13: -0.0215 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.5221 L22: 4.5481 REMARK 3 L33: 2.7032 L12: 1.1670 REMARK 3 L13: -0.3091 L23: -1.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.1597 S13: -0.0769 REMARK 3 S21: -0.0834 S22: -0.0798 S23: 0.1094 REMARK 3 S31: -0.0389 S32: -0.1004 S33: -0.0209 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 261.2769 51.3641 80.5277 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1722 REMARK 3 T33: 0.2252 T12: 0.0650 REMARK 3 T13: -0.0007 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 4.0814 L22: 1.8059 REMARK 3 L33: 6.6458 L12: 0.3981 REMARK 3 L13: -1.8780 L23: 0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.0166 S13: 0.2447 REMARK 3 S21: 0.0330 S22: 0.1527 S23: 0.2284 REMARK 3 S31: -0.2585 S32: -0.3623 S33: -0.1193 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 259.2869 43.6370 95.6764 REMARK 3 T TENSOR REMARK 3 T11: 0.4142 T22: 0.7168 REMARK 3 T33: 0.4060 T12: 0.0643 REMARK 3 T13: 0.1401 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.3761 L22: 5.8186 REMARK 3 L33: 2.5973 L12: 0.3317 REMARK 3 L13: -1.5432 L23: 0.7796 REMARK 3 S TENSOR REMARK 3 S11: -0.2220 S12: -0.8457 S13: -0.1396 REMARK 3 S21: 1.2723 S22: -0.4910 S23: 1.3110 REMARK 3 S31: -0.1663 S32: -1.3303 S33: 0.6013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 274.7367 51.1282 83.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1172 REMARK 3 T33: 0.1710 T12: 0.0245 REMARK 3 T13: -0.0045 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 9.3756 L22: 1.8837 REMARK 3 L33: 5.5110 L12: 0.2769 REMARK 3 L13: -2.7270 L23: -0.8041 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0600 S13: 0.4551 REMARK 3 S21: -0.1286 S22: 0.0422 S23: -0.1008 REMARK 3 S31: -0.1754 S32: -0.0283 S33: -0.1003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 272.3470 45.4401 92.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.2203 REMARK 3 T33: 0.1671 T12: -0.0011 REMARK 3 T13: -0.0304 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.1659 L22: 2.6176 REMARK 3 L33: 6.7019 L12: 0.6726 REMARK 3 L13: -2.4652 L23: 0.4813 REMARK 3 S TENSOR REMARK 3 S11: 0.1327 S12: -0.4068 S13: -0.1664 REMARK 3 S21: 0.1610 S22: -0.1204 S23: -0.1625 REMARK 3 S31: 0.0089 S32: -0.1751 S33: 0.0358 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 307.4822 63.0277 103.5342 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.2047 REMARK 3 T33: 0.1826 T12: -0.0420 REMARK 3 T13: -0.0501 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.3199 L22: 2.6794 REMARK 3 L33: 7.2013 L12: 0.4746 REMARK 3 L13: 1.0686 L23: 0.7080 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: -0.2370 S13: 0.0044 REMARK 3 S21: 0.4651 S22: -0.0858 S23: -0.3022 REMARK 3 S31: -0.0915 S32: 0.5423 S33: -0.0527 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 308.4544 49.9585 99.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.6844 T22: 0.3841 REMARK 3 T33: 0.5306 T12: 0.1827 REMARK 3 T13: -0.1364 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 2.1847 L22: 0.4733 REMARK 3 L33: 1.8630 L12: 0.9117 REMARK 3 L13: -0.6821 L23: 0.1077 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.2727 S13: -0.8723 REMARK 3 S21: 0.5503 S22: 0.0780 S23: -1.0059 REMARK 3 S31: 1.8111 S32: 1.2738 S33: -0.1985 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 293.1164 56.0300 94.2094 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1108 REMARK 3 T33: 0.1483 T12: -0.0141 REMARK 3 T13: 0.0117 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.1490 L22: 2.6108 REMARK 3 L33: 1.6260 L12: 0.0668 REMARK 3 L13: 0.0322 L23: -0.3145 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0359 S13: -0.0637 REMARK 3 S21: 0.1221 S22: -0.0041 S23: 0.1607 REMARK 3 S31: 0.1460 S32: -0.1129 S33: 0.0104 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 294.1801 61.4392 106.0539 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1171 REMARK 3 T33: 0.1162 T12: -0.0029 REMARK 3 T13: 0.0312 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.2039 L22: 4.2655 REMARK 3 L33: 5.6363 L12: 0.8335 REMARK 3 L13: -0.9462 L23: -2.1071 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.2657 S13: -0.0510 REMARK 3 S21: 0.4978 S22: -0.0978 S23: 0.1207 REMARK 3 S31: 0.0883 S32: -0.0906 S33: 0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43805 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1F6B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000 (W/V), 1.0M LICL, 0.1M REMARK 280 MGCL2, 0.1M SODIUM ACETATE BUFFER, PH4.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.06250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.96650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.06250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.96650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 TRP A 7 REMARK 465 ILE A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 PHE A 12 REMARK 465 ARG A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 HIS A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 THR A 56 REMARK 465 LEU A 57 REMARK 465 HIS A 58 REMARK 465 GLY A 78 REMARK 465 HIS A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 ALA A 82 REMARK 465 ARG A 83 REMARK 465 ARG A 84 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 TRP B 7 REMARK 465 ILE B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 PHE B 12 REMARK 465 ASP B 47 REMARK 465 ASP B 48 REMARK 465 ARG B 49 REMARK 465 LEU B 50 REMARK 465 GLY B 51 REMARK 465 GLN B 52 REMARK 465 HIS B 53 REMARK 465 VAL B 54 REMARK 465 PRO B 55 REMARK 465 THR B 56 REMARK 465 LEU B 57 REMARK 465 HIS B 58 REMARK 465 PRO B 59 REMARK 465 GLY B 78 REMARK 465 HIS B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 ALA B 82 REMARK 465 ARG B 83 REMARK 465 ARG B 84 REMARK 465 VAL B 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 34 O HOH A 301 2.07 REMARK 500 O HOH B 334 O HOH B 423 2.12 REMARK 500 OE2 GLU A 188 O HOH A 302 2.13 REMARK 500 O HOH A 420 O HOH A 445 2.13 REMARK 500 O TYR A 89 O HOH A 303 2.14 REMARK 500 O HOH A 303 O HOH A 434 2.16 REMARK 500 O HOH B 412 O HOH B 414 2.16 REMARK 500 O THR B 60 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 1.70 80.10 REMARK 500 ALA A 67 -123.83 52.48 REMARK 500 LYS A 135 34.24 76.35 REMARK 500 ASN B 35 -0.50 76.99 REMARK 500 ALA B 67 -122.15 47.53 REMARK 500 ASN B 88 4.39 -67.81 REMARK 500 LYS B 135 34.18 72.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 39 OG1 REMARK 620 2 G4P A 203 O1B 89.3 REMARK 620 3 HOH A 316 O 176.4 93.4 REMARK 620 4 HOH A 322 O 92.0 90.8 90.2 REMARK 620 5 HOH A 378 O 91.2 92.3 86.5 175.6 REMARK 620 6 HOH A 391 O 88.3 175.2 89.1 85.1 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD1 REMARK 620 2 SER A 106 OG 89.9 REMARK 620 3 HOH A 341 O 72.3 162.1 REMARK 620 4 G4P B 203 O1C 73.0 162.8 3.8 REMARK 620 5 G4P B 203 O1D 74.1 163.9 3.4 1.3 REMARK 620 6 HOH B 328 O 70.8 160.7 2.3 2.9 3.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P A 203 O2C REMARK 620 2 G4P A 203 O2D 89.7 REMARK 620 3 HOH A 328 O 94.6 90.7 REMARK 620 4 ASP B 104 OD1 59.2 46.6 62.0 REMARK 620 5 SER B 106 OG 59.6 43.9 64.8 3.2 REMARK 620 6 HOH B 325 O 91.1 173.8 95.3 138.2 140.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 39 OG1 REMARK 620 2 G4P B 203 O2B 88.9 REMARK 620 3 HOH B 321 O 177.1 92.8 REMARK 620 4 HOH B 333 O 92.2 90.1 90.1 REMARK 620 5 HOH B 350 O 90.6 94.3 86.9 174.8 REMARK 620 6 HOH B 386 O 88.6 175.7 89.9 86.5 89.2 REMARK 620 N 1 2 3 4 5 DBREF 8DZM A 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 DBREF 8DZM B 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 SEQRES 1 A 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 A 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 A 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS THR SEQRES 4 A 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 A 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 A 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 A 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 A 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 A 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 A 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 A 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 A 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 A 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 A 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 A 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 A 198 TYR ILE ASP SEQRES 1 B 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 B 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 B 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS THR SEQRES 4 B 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 B 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 B 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 B 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 B 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 B 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 B 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 B 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 B 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 B 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 B 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 B 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 B 198 TYR ILE ASP HET MG A 201 1 HET MG A 202 1 HET G4P A 203 36 HET MG B 201 1 HET MG B 202 1 HET G4P B 203 36 HETNAM MG MAGNESIUM ION HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 3 MG 4(MG 2+) FORMUL 5 G4P 2(C10 H17 N5 O17 P4) FORMUL 9 HOH *282(H2 O) HELIX 1 AA1 SER A 13 LEU A 19 1 7 HELIX 2 AA2 GLY A 37 MET A 44 1 8 HELIX 3 AA3 ASP A 104 SER A 106 5 3 HELIX 4 AA4 ARG A 107 THR A 120 1 14 HELIX 5 AA5 ASP A 121 SER A 125 5 5 HELIX 6 AA6 SER A 143 GLY A 152 1 10 HELIX 7 AA7 GLY A 185 GLN A 195 1 11 HELIX 8 AA8 SER B 14 LEU B 19 1 6 HELIX 9 AA9 GLY B 37 LEU B 45 1 9 HELIX 10 AB1 ASP B 104 SER B 106 5 3 HELIX 11 AB2 ARG B 107 ASP B 121 1 15 HELIX 12 AB3 GLU B 122 SER B 125 5 4 HELIX 13 AB4 SER B 143 PHE B 151 1 9 HELIX 14 AB5 GLY B 185 GLN B 195 1 11 SHEET 1 AA1 6 GLU A 62 ILE A 66 0 SHEET 2 AA1 6 MET A 69 THR A 73 -1 O MET A 69 N ILE A 66 SHEET 3 AA1 6 GLY A 26 LEU A 31 1 N LEU A 28 O THR A 70 SHEET 4 AA1 6 GLY A 95 ASP A 101 1 O VAL A 97 N LEU A 31 SHEET 5 AA1 6 ILE A 129 ASN A 134 1 O LEU A 130 N PHE A 98 SHEET 6 AA1 6 MET A 173 MET A 177 1 O GLU A 174 N ILE A 131 SHEET 1 AA2 6 GLU B 62 ILE B 66 0 SHEET 2 AA2 6 MET B 69 THR B 73 -1 O PHE B 71 N LEU B 64 SHEET 3 AA2 6 GLY B 26 GLY B 32 1 N PHE B 30 O THR B 72 SHEET 4 AA2 6 GLY B 95 ASP B 101 1 O VAL B 97 N LEU B 31 SHEET 5 AA2 6 ILE B 129 ASN B 134 1 O LEU B 130 N PHE B 98 SHEET 6 AA2 6 MET B 173 MET B 177 1 O GLU B 174 N ILE B 131 LINK OG1 THR A 39 MG MG A 202 1555 1555 2.04 LINK OD1 ASP A 104 MG MG B 202 1555 4947 2.03 LINK OG SER A 106 MG MG B 202 1555 4947 2.13 LINK MG MG A 201 O2C G4P A 203 1555 1555 2.12 LINK MG MG A 201 O2D G4P A 203 1555 1555 2.00 LINK MG MG A 201 O HOH A 328 1555 1555 2.07 LINK MG MG A 201 OD1 ASP B 104 4957 1555 2.06 LINK MG MG A 201 OG SER B 106 4957 1555 2.12 LINK MG MG A 201 O HOH B 325 1555 4947 2.00 LINK MG MG A 202 O1B G4P A 203 1555 1555 2.02 LINK MG MG A 202 O HOH A 316 1555 1555 2.20 LINK MG MG A 202 O HOH A 322 1555 1555 2.08 LINK MG MG A 202 O HOH A 378 1555 1555 2.01 LINK MG MG A 202 O HOH A 391 1555 1555 2.13 LINK O HOH A 341 MG MG B 202 4957 1555 2.07 LINK OG1 THR B 39 MG MG B 201 1555 1555 2.06 LINK MG MG B 201 O2B G4P B 203 1555 1555 2.04 LINK MG MG B 201 O HOH B 321 1555 1555 2.14 LINK MG MG B 201 O HOH B 333 1555 1555 2.04 LINK MG MG B 201 O HOH B 350 1555 1555 2.08 LINK MG MG B 201 O HOH B 386 1555 1555 2.13 LINK MG MG B 202 O1C G4P B 203 1555 1555 2.10 LINK MG MG B 202 O1D G4P B 203 1555 1555 2.05 LINK MG MG B 202 O HOH B 328 1555 1555 2.09 CRYST1 136.125 35.933 76.118 90.00 101.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007346 0.000000 0.001497 0.00000 SCALE2 0.000000 0.027830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013407 0.00000