HEADER SIGNALING PROTEIN 08-AUG-22 8DZN TITLE CRYSTAL STRUCTURE OF HUMAN SAR1A IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN SAR1A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COPII-ASSOCIATED SMALL GTPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAR1A, SAR1, SARA, SARA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SAR1A, GDP, COPII, SMALL GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUANG REVDAT 2 28-FEB-24 8DZN 1 JRNL REVDAT 1 16-AUG-23 8DZN 0 JRNL AUTH Q.HUANG,D.M.E.SZEBENYI JRNL TITL THE ALARMONE PPGPP SELECTIVELY INHIBITS THE ISOFORM A OF THE JRNL TITL 2 HUMAN SMALL GTPASE SAR1. JRNL REF PROTEINS V. 91 518 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 36369712 JRNL DOI 10.1002/PROT.26445 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 23985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2000 - 5.0693 0.93 1580 144 0.1864 0.2336 REMARK 3 2 5.0693 - 4.0274 0.92 1532 139 0.1424 0.1770 REMARK 3 3 4.0274 - 3.5194 0.94 1556 140 0.1541 0.1871 REMARK 3 4 3.5194 - 3.1981 0.97 1583 145 0.1713 0.2281 REMARK 3 5 3.1981 - 2.9691 0.98 1602 146 0.1903 0.2470 REMARK 3 6 2.9691 - 2.7943 0.99 1628 147 0.1975 0.2787 REMARK 3 7 2.7943 - 2.6544 0.98 1620 148 0.1938 0.2529 REMARK 3 8 2.6544 - 2.5390 0.98 1601 144 0.2048 0.2646 REMARK 3 9 2.5390 - 2.4413 0.98 1603 147 0.1985 0.2806 REMARK 3 10 2.4413 - 2.3571 0.98 1600 143 0.1986 0.2793 REMARK 3 11 2.3571 - 2.2834 0.97 1576 142 0.1913 0.2729 REMARK 3 12 2.2834 - 2.2182 0.95 1533 138 0.2192 0.2772 REMARK 3 13 2.2182 - 2.1598 0.93 1534 139 0.2219 0.2525 REMARK 3 14 2.1598 - 2.1071 0.87 1444 131 0.2315 0.3485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2836 REMARK 3 ANGLE : 1.022 3843 REMARK 3 CHIRALITY : 0.059 448 REMARK 3 PLANARITY : 0.006 469 REMARK 3 DIHEDRAL : 17.781 1665 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.6487 8.1130 -90.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.5384 REMARK 3 T33: 0.5822 T12: 0.0251 REMARK 3 T13: 0.0034 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 1.4480 L22: 1.9181 REMARK 3 L33: 7.0541 L12: -1.1127 REMARK 3 L13: -0.7043 L23: 2.6127 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.1615 S13: 0.4341 REMARK 3 S21: -0.0903 S22: -0.1285 S23: 2.1086 REMARK 3 S31: 0.0218 S32: -1.3024 S33: -0.0199 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.3791 7.3502-100.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.1968 REMARK 3 T33: 0.2227 T12: -0.0161 REMARK 3 T13: -0.0668 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 5.6304 L22: 3.4074 REMARK 3 L33: 4.6743 L12: -1.4470 REMARK 3 L13: -1.2494 L23: 0.4023 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: 0.4892 S13: -0.1366 REMARK 3 S21: -0.4144 S22: 0.0151 S23: 0.2796 REMARK 3 S31: 0.2702 S32: -0.1672 S33: -0.0879 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.3269 9.9033-109.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.5626 T22: 0.5478 REMARK 3 T33: 0.4678 T12: 0.0051 REMARK 3 T13: -0.0144 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 2.9688 L22: 5.3012 REMARK 3 L33: 2.0440 L12: -0.7679 REMARK 3 L13: -0.4075 L23: -0.5658 REMARK 3 S TENSOR REMARK 3 S11: 0.2938 S12: 1.0516 S13: 0.2636 REMARK 3 S21: -1.0100 S22: 0.0642 S23: 0.1241 REMARK 3 S31: -0.0799 S32: 0.2587 S33: -0.1435 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.9283 14.2255 -97.1773 REMARK 3 T TENSOR REMARK 3 T11: 0.4526 T22: 0.2153 REMARK 3 T33: 0.2812 T12: 0.0246 REMARK 3 T13: -0.0833 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 8.2036 L22: 3.0026 REMARK 3 L33: 4.9474 L12: -1.5878 REMARK 3 L13: -3.3193 L23: 0.3120 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: 0.1611 S13: 0.5176 REMARK 3 S21: -0.2367 S22: 0.1759 S23: 0.0285 REMARK 3 S31: -0.3300 S32: -0.3072 S33: -0.3236 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.0421 9.5389 -94.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.1995 REMARK 3 T33: 0.2996 T12: -0.0004 REMARK 3 T13: -0.1490 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.5939 L22: 1.5545 REMARK 3 L33: 1.4202 L12: 0.9219 REMARK 3 L13: 0.1522 L23: -0.6346 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.0344 S13: 0.0648 REMARK 3 S21: -0.4536 S22: -0.0764 S23: -0.0128 REMARK 3 S31: -0.2113 S32: 0.1700 S33: 0.0703 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8624 2.7616 -92.5192 REMARK 3 T TENSOR REMARK 3 T11: 0.3828 T22: 0.2008 REMARK 3 T33: 0.3652 T12: -0.0104 REMARK 3 T13: -0.1279 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.7910 L22: 3.8523 REMARK 3 L33: 3.2960 L12: -0.2722 REMARK 3 L13: 0.0021 L23: 0.4291 REMARK 3 S TENSOR REMARK 3 S11: 0.2290 S12: -0.1636 S13: -0.1927 REMARK 3 S21: 0.0664 S22: -0.0977 S23: -0.5860 REMARK 3 S31: 0.0192 S32: 0.2654 S33: -0.0729 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.6293 -9.8681 -98.8547 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.2282 REMARK 3 T33: 0.3760 T12: 0.0241 REMARK 3 T13: -0.0752 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.7210 L22: 3.6613 REMARK 3 L33: 4.4344 L12: -0.1523 REMARK 3 L13: 4.1879 L23: -0.5587 REMARK 3 S TENSOR REMARK 3 S11: 0.2484 S12: 0.3146 S13: -0.4773 REMARK 3 S21: -0.5320 S22: 0.1911 S23: -0.1811 REMARK 3 S31: 0.4413 S32: 0.3038 S33: -0.4867 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.6518 -2.2738 -79.8299 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.3203 REMARK 3 T33: 0.2443 T12: 0.0015 REMARK 3 T13: -0.1046 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 5.4627 L22: 3.6721 REMARK 3 L33: 2.1453 L12: -0.2363 REMARK 3 L13: -1.2119 L23: 0.8078 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.6600 S13: -0.3286 REMARK 3 S21: 0.3077 S22: -0.0352 S23: -0.1306 REMARK 3 S31: 0.1832 S32: 0.2940 S33: -0.1742 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.9249 -3.8435 -96.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.2530 REMARK 3 T33: 0.3035 T12: -0.0175 REMARK 3 T13: -0.1134 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.7684 L22: 4.4631 REMARK 3 L33: 2.3258 L12: -0.2502 REMARK 3 L13: 3.6596 L23: -0.4896 REMARK 3 S TENSOR REMARK 3 S11: 0.3380 S12: -0.0818 S13: -0.4182 REMARK 3 S21: -0.4555 S22: 0.1658 S23: 0.2832 REMARK 3 S31: 0.4418 S32: -0.5077 S33: -0.6119 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -77.5783 2.4577 -87.2588 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.2801 REMARK 3 T33: 0.2184 T12: 0.0200 REMARK 3 T13: -0.0079 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 8.4121 L22: 7.5457 REMARK 3 L33: 2.2289 L12: 2.4437 REMARK 3 L13: 3.9278 L23: 2.6916 REMARK 3 S TENSOR REMARK 3 S11: -0.2048 S12: -0.5449 S13: -0.1239 REMARK 3 S21: -0.2680 S22: -0.0623 S23: 0.6169 REMARK 3 S31: -0.3419 S32: -0.4733 S33: 0.2314 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.0239 -5.4344 -82.0014 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2795 REMARK 3 T33: 0.2108 T12: -0.0831 REMARK 3 T13: 0.0096 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.4609 L22: 6.9705 REMARK 3 L33: 6.4216 L12: -0.1532 REMARK 3 L13: -1.7726 L23: 1.4721 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: 0.0870 S13: 0.0675 REMARK 3 S21: -0.3766 S22: -0.0947 S23: -0.1068 REMARK 3 S31: -0.3586 S32: -0.0338 S33: 0.3037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A):-100.0378 -4.7629 -74.7391 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.2063 REMARK 3 T33: 0.2622 T12: -0.0322 REMARK 3 T13: -0.1289 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 4.4634 L22: 2.8462 REMARK 3 L33: 4.1543 L12: -1.7459 REMARK 3 L13: -0.4693 L23: -0.2719 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.0697 S13: -0.2136 REMARK 3 S21: -0.3114 S22: 0.0993 S23: 0.4621 REMARK 3 S31: -0.1098 S32: -0.3607 S33: -0.0377 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -99.4955 -10.1501 -77.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.4749 T22: 0.3182 REMARK 3 T33: 0.3469 T12: -0.0186 REMARK 3 T13: -0.1306 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 8.3472 L22: 2.3932 REMARK 3 L33: 3.7275 L12: 1.8966 REMARK 3 L13: -3.6647 L23: -0.4076 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.7483 S13: -0.0375 REMARK 3 S21: -0.2895 S22: 0.1929 S23: 0.5868 REMARK 3 S31: 0.1213 S32: -0.6210 S33: -0.2044 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -96.7842 -12.9688 -64.3876 REMARK 3 T TENSOR REMARK 3 T11: 0.7674 T22: 0.2799 REMARK 3 T33: 0.3106 T12: 0.0218 REMARK 3 T13: -0.1190 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.1632 L22: 4.3157 REMARK 3 L33: 0.4098 L12: 1.6453 REMARK 3 L13: -0.2246 L23: -1.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: -0.0280 S13: -0.5264 REMARK 3 S21: 0.5902 S22: -0.0254 S23: -0.4694 REMARK 3 S31: 0.3011 S32: 0.1350 S33: 0.0990 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -99.2953 0.7634 -63.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.4522 T22: 0.1933 REMARK 3 T33: 0.2766 T12: 0.0136 REMARK 3 T13: -0.0535 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.3082 L22: 2.9561 REMARK 3 L33: 2.5584 L12: -0.4640 REMARK 3 L13: -0.6951 L23: -0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.0611 S13: 0.0475 REMARK 3 S21: 0.5044 S22: 0.0553 S23: 0.2767 REMARK 3 S31: -0.2283 S32: -0.1452 S33: 0.0142 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A):-102.2970 12.6745 -69.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.5534 T22: 0.2356 REMARK 3 T33: 0.3560 T12: 0.0680 REMARK 3 T13: -0.1171 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.5321 L22: 3.3942 REMARK 3 L33: 7.5065 L12: 0.0793 REMARK 3 L13: -1.3964 L23: 0.6063 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: 0.0463 S13: 0.6132 REMARK 3 S21: -0.1286 S22: -0.0463 S23: 0.5450 REMARK 3 S31: -1.6374 S32: -0.5542 S33: 0.2397 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.0327 5.7716 -62.3237 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.3618 REMARK 3 T33: 0.2993 T12: -0.0977 REMARK 3 T13: -0.1950 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.2278 L22: 5.5887 REMARK 3 L33: 3.9418 L12: -0.2425 REMARK 3 L13: -3.4532 L23: -1.1088 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.6375 S13: 0.0933 REMARK 3 S21: 0.2303 S22: -0.2074 S23: -0.8504 REMARK 3 S31: -0.2759 S32: 0.4938 S33: 0.1516 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -95.9137 6.5181 -76.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.5269 T22: 0.2384 REMARK 3 T33: 0.2732 T12: -0.0157 REMARK 3 T13: 0.0085 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 9.7265 L22: 4.4137 REMARK 3 L33: 7.8888 L12: -0.7255 REMARK 3 L13: 4.5493 L23: 0.5580 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.7569 S13: 0.4296 REMARK 3 S21: -0.4494 S22: -0.0013 S23: -0.0798 REMARK 3 S31: -0.8564 S32: 0.2240 S33: 0.1567 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.8854 0.4301 -73.7671 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2256 REMARK 3 T33: 0.2124 T12: -0.0415 REMARK 3 T13: -0.0280 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 7.9067 L22: 3.9426 REMARK 3 L33: 8.2582 L12: 0.7227 REMARK 3 L13: 2.4690 L23: 0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: -0.1829 S13: 0.2723 REMARK 3 S21: 0.0819 S22: 0.0276 S23: -0.2920 REMARK 3 S31: 0.0097 S32: -0.0543 S33: 0.1535 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24060 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8DZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M NAH2PO4/K2HPO4 AND 0.1M SODIUM REMARK 280 CITRATE, PH5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.98500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 TRP A 7 REMARK 465 ILE A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 PHE A 12 REMARK 465 LYS A 46 REMARK 465 ASP A 47 REMARK 465 ASP A 48 REMARK 465 ARG A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 HIS A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 ALA A 82 REMARK 465 ARG A 83 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 TRP B 7 REMARK 465 ILE B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 PHE B 12 REMARK 465 ASP B 47 REMARK 465 ASP B 48 REMARK 465 ARG B 49 REMARK 465 LEU B 50 REMARK 465 GLY B 51 REMARK 465 GLN B 52 REMARK 465 HIS B 53 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 HIS B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 ALA B 82 REMARK 465 ARG B 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 195 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 8.65 81.16 REMARK 500 ALA A 67 -116.72 46.34 REMARK 500 LYS A 135 33.18 78.91 REMARK 500 LEU B 45 11.93 -66.47 REMARK 500 ALA B 67 -122.49 47.98 REMARK 500 LYS B 135 34.70 79.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DZM RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND DBREF 8DZN A 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 DBREF 8DZN B 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 SEQRES 1 A 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 A 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 A 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS THR SEQRES 4 A 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 A 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 A 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 A 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 A 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 A 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 A 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 A 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 A 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 A 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 A 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 A 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 A 198 TYR ILE ASP SEQRES 1 B 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 B 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 B 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS THR SEQRES 4 B 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 B 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 B 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 B 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 B 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 B 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 B 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 B 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 B 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 B 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 B 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 B 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 B 198 TYR ILE ASP HET GDP A 201 28 HET SO4 B 201 5 HET GDP B 202 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *121(H2 O) HELIX 1 AA1 SER A 14 LEU A 19 1 6 HELIX 2 AA2 GLY A 37 LEU A 45 1 9 HELIX 3 AA3 ARG A 84 LEU A 90 5 7 HELIX 4 AA4 ASP A 104 SER A 106 5 3 HELIX 5 AA5 ARG A 107 THR A 120 1 14 HELIX 6 AA6 ASP A 121 SER A 125 5 5 HELIX 7 AA7 SER A 143 GLY A 152 1 10 HELIX 8 AA8 GLY A 185 GLN A 195 1 11 HELIX 9 AA9 SER B 14 LEU B 19 1 6 HELIX 10 AB1 GLY B 37 LEU B 45 1 9 HELIX 11 AB2 ARG B 84 ILE B 93 5 10 HELIX 12 AB3 ASP B 104 SER B 106 5 3 HELIX 13 AB4 ARG B 107 ASP B 121 1 15 HELIX 14 AB5 GLU B 122 SER B 125 5 4 HELIX 15 AB6 SER B 143 GLY B 152 1 10 HELIX 16 AB7 GLY B 185 GLN B 195 1 11 SHEET 1 AA1 6 GLU A 62 ILE A 66 0 SHEET 2 AA1 6 MET A 69 ASP A 75 -1 O PHE A 71 N LEU A 64 SHEET 3 AA1 6 GLY A 26 GLY A 32 1 N PHE A 30 O THR A 72 SHEET 4 AA1 6 GLY A 95 ASP A 101 1 O LEU A 99 N LEU A 31 SHEET 5 AA1 6 ILE A 129 ASN A 134 1 O LEU A 130 N PHE A 98 SHEET 6 AA1 6 MET A 173 CYS A 178 1 O GLU A 174 N ILE A 131 SHEET 1 AA2 6 GLU B 63 ILE B 66 0 SHEET 2 AA2 6 MET B 69 ASP B 75 -1 O MET B 69 N ILE B 66 SHEET 3 AA2 6 GLY B 26 GLY B 32 1 N PHE B 30 O THR B 72 SHEET 4 AA2 6 GLY B 95 ASP B 101 1 O VAL B 97 N LEU B 31 SHEET 5 AA2 6 ILE B 129 ASN B 134 1 O LEU B 130 N PHE B 98 SHEET 6 AA2 6 MET B 173 MET B 177 1 O GLU B 174 N ILE B 131 CRYST1 57.172 63.970 62.233 90.00 105.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017491 0.000000 0.004998 0.00000 SCALE2 0.000000 0.015632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016712 0.00000