HEADER PROTEIN BINDING 08-AUG-22 8DZV TITLE CHICKEN ANTI-CARDIAC TROPONIN I ANTIBODY IN COMPLEX WITH PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV 2B12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CTNI PEPTIDE; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SCFV, CHICKEN, CTNI, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.CONROY,H.P.LAW REVDAT 3 23-OCT-24 8DZV 1 REMARK REVDAT 2 30-AUG-23 8DZV 1 JRNL REVDAT 1 26-JUL-23 8DZV 0 JRNL AUTH J.ISLAM,P.CONROY,C.FERCHER,M.KIM,Z.YAARI,M.JONES,T.D.M.BELL, JRNL AUTH 2 T.CARADOC-DAVIES,R.LAW,J.WHISSTOCK,D.HELLER,S.MAHLER, JRNL AUTH 3 S.CORRIE JRNL TITL DESIGN OF POLARITY-DEPENDENT IMMUNOSENSORS BASED ON THE JRNL TITL 2 STRUCTURAL ANALYSIS OF ENGINEERED ANTIBODIES. JRNL REF ACS CHEM.BIOL. V. 18 1863 2023 JRNL REFN ESSN 1554-8937 JRNL PMID 37440171 JRNL DOI 10.1021/ACSCHEMBIO.3C00303 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 80288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7200 - 3.6900 0.90 2591 140 0.1685 0.1712 REMARK 3 2 3.6900 - 2.9300 0.96 2639 143 0.1591 0.1686 REMARK 3 3 2.9300 - 2.5600 0.97 2635 125 0.1683 0.1754 REMARK 3 4 2.5600 - 2.3200 0.98 2633 159 0.1674 0.1736 REMARK 3 5 2.3200 - 2.1600 0.98 2638 127 0.1608 0.2027 REMARK 3 6 2.1600 - 2.0300 0.99 2640 157 0.1448 0.1690 REMARK 3 7 2.0300 - 1.9300 0.99 2630 148 0.1500 0.1468 REMARK 3 8 1.9300 - 1.8400 0.99 2633 152 0.1624 0.1737 REMARK 3 9 1.8400 - 1.7700 0.99 2618 144 0.1529 0.1615 REMARK 3 10 1.7700 - 1.7100 1.00 2659 137 0.1501 0.1556 REMARK 3 11 1.7100 - 1.6600 1.00 2667 127 0.1503 0.1901 REMARK 3 12 1.6600 - 1.6100 1.00 2635 132 0.1452 0.1636 REMARK 3 13 1.6100 - 1.5700 1.00 2632 149 0.1476 0.1616 REMARK 3 14 1.5700 - 1.5300 1.00 2618 131 0.1508 0.1407 REMARK 3 15 1.5300 - 1.4900 1.00 2637 134 0.1473 0.1827 REMARK 3 16 1.4900 - 1.4600 1.00 2664 130 0.1548 0.1757 REMARK 3 17 1.4600 - 1.4300 1.00 2626 127 0.1593 0.1660 REMARK 3 18 1.4300 - 1.4100 1.00 2609 155 0.1602 0.1653 REMARK 3 19 1.4100 - 1.3800 1.00 2646 134 0.1573 0.1956 REMARK 3 20 1.3800 - 1.3600 1.00 2601 142 0.1675 0.1716 REMARK 3 21 1.3600 - 1.3400 1.00 2615 169 0.1650 0.1905 REMARK 3 22 1.3400 - 1.3200 1.00 2633 127 0.1685 0.2044 REMARK 3 23 1.3200 - 1.3000 1.00 2628 132 0.1783 0.1898 REMARK 3 24 1.3000 - 1.2800 1.00 2610 145 0.1835 0.1885 REMARK 3 25 1.2800 - 1.2600 1.00 2589 166 0.1768 0.1878 REMARK 3 26 1.2600 - 1.2400 1.00 2628 139 0.1709 0.1736 REMARK 3 27 1.2400 - 1.2300 1.00 2635 122 0.1784 0.2325 REMARK 3 28 1.2300 - 1.2100 1.00 2607 125 0.1818 0.1928 REMARK 3 29 1.2100 - 1.2000 0.99 2645 129 0.1903 0.1890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 335.5245 85.1789 92.2041 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.0530 REMARK 3 T33: 0.0661 T12: 0.0073 REMARK 3 T13: -0.0076 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2868 L22: 0.6126 REMARK 3 L33: 1.8860 L12: 0.2907 REMARK 3 L13: 0.9270 L23: 0.0732 REMARK 3 S TENSOR REMARK 3 S11: 0.0623 S12: -0.0012 S13: -0.0583 REMARK 3 S21: 0.0175 S22: -0.0211 S23: -0.1113 REMARK 3 S31: 0.0698 S32: 0.1139 S33: -0.0347 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 320.3682 98.3960 90.4771 REMARK 3 T TENSOR REMARK 3 T11: 0.0589 T22: 0.0485 REMARK 3 T33: 0.0457 T12: -0.0029 REMARK 3 T13: 0.0008 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4108 L22: 0.6081 REMARK 3 L33: 0.8735 L12: -0.1243 REMARK 3 L13: -0.0849 L23: -0.0491 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0037 S13: 0.0181 REMARK 3 S21: -0.0112 S22: -0.0073 S23: 0.0109 REMARK 3 S31: -0.0906 S32: -0.0305 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 319.3897 87.9587 75.1514 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.0663 REMARK 3 T33: 0.0476 T12: -0.0023 REMARK 3 T13: -0.0131 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.7513 L22: 5.7160 REMARK 3 L33: 5.3522 L12: 0.4782 REMARK 3 L13: -0.0040 L23: -0.2497 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.1984 S13: -0.1769 REMARK 3 S21: -0.1963 S22: 0.0013 S23: 0.3329 REMARK 3 S31: 0.1277 S32: -0.3398 S33: -0.0274 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000264347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953689 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.03426 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16180 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M POTASSIUM REMARK 280 IODIDE, 25% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.71500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 112 REMARK 465 SER A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 465 SER A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 THR A 253 REMARK 465 SER A 254 REMARK 465 GLY A 255 REMARK 465 GLN A 256 REMARK 465 ALA A 257 REMARK 465 GLY A 258 REMARK 465 GLN A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 GLY A 266 REMARK 465 ALA A 267 REMARK 465 TYR A 268 REMARK 465 PRO A 269 REMARK 465 TYR A 270 REMARK 465 ASP A 271 REMARK 465 VAL A 272 REMARK 465 PRO A 273 REMARK 465 ASP A 274 REMARK 465 TYR A 275 REMARK 465 ALA A 276 REMARK 465 SER A 277 REMARK 465 LEU C 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 MET A 96 SD CE REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LYS C 50 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 50 O HOH C 101 1.80 REMARK 500 O HOH A 597 O HOH A 642 1.81 REMARK 500 O HOH A 690 O HOH A 738 1.90 REMARK 500 O HOH A 405 O HOH A 490 1.91 REMARK 500 NH1 ARG A 208 O HOH A 401 1.97 REMARK 500 O HOH A 737 O HOH A 739 1.98 REMARK 500 O HOH A 687 O HOH A 805 1.99 REMARK 500 O HOH A 545 O HOH A 597 2.00 REMARK 500 OG SER A 40 O HOH A 402 2.00 REMARK 500 O HOH A 632 O HOH A 748 2.01 REMARK 500 OE1 GLN A 204 O HOH A 403 2.01 REMARK 500 O HOH A 643 O HOH A 688 2.02 REMARK 500 O HOH A 545 O HOH A 677 2.02 REMARK 500 O HOH A 490 O HOH A 808 2.03 REMARK 500 O HOH A 661 O HOH C 110 2.03 REMARK 500 O HOH A 673 O HOH A 803 2.03 REMARK 500 O HOH A 703 O HOH A 777 2.04 REMARK 500 O HOH A 579 O HOH A 739 2.04 REMARK 500 O HOH A 691 O HOH A 800 2.06 REMARK 500 NH2 ARG A 208 O HOH A 401 2.08 REMARK 500 O HOH A 717 O HOH A 824 2.09 REMARK 500 O HOH A 517 O HOH A 688 2.10 REMARK 500 O HOH A 588 O HOH A 664 2.12 REMARK 500 O HOH A 438 O HOH A 646 2.12 REMARK 500 O HOH A 720 O HOH A 787 2.14 REMARK 500 O HOH C 114 O HOH C 117 2.14 REMARK 500 O HOH A 603 O HOH A 675 2.14 REMARK 500 O HOH A 511 O HOH A 629 2.15 REMARK 500 O HOH A 704 O HOH A 763 2.16 REMARK 500 O HOH A 565 O HOH A 779 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 408 O HOH A 408 2577 1.58 REMARK 500 O HOH A 667 O HOH A 667 2587 2.18 REMARK 500 O HOH A 797 O HOH A 819 42075 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 183 OD1 - CG - OD2 ANGL. DEV. = -45.5 DEGREES REMARK 500 ASP A 183 CB - CG - OD1 ANGL. DEV. = 44.2 DEGREES REMARK 500 ASP A 183 CB - CG - OD2 ANGL. DEV. = -33.5 DEGREES REMARK 500 CYS A 224 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 -49.57 73.70 REMARK 500 ALA A 85 171.21 179.02 REMARK 500 SER A 91 -157.30 -161.66 REMARK 500 ASN A 95 -90.62 -144.55 REMARK 500 ASP A 183 -9.70 89.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 829 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 252 OG REMARK 620 2 HOH A 760 O 83.2 REMARK 620 N 1 DBREF 8DZV A 1 277 PDB 8DZV 8DZV 1 277 DBREF 8DZV C 40 52 UNP P19429 TNNI3_HUMAN 40 52 SEQRES 1 A 277 ALA LEU THR GLN PRO SER SER VAL SER ALA ASN PRO GLY SEQRES 2 A 277 GLU THR VAL LYS ILE THR CYS SER GLY GLY GLY ARG TYR SEQRES 3 A 277 TYR ASP GLY SER TYR TYR TYR GLY TRP TYR GLN GLN LYS SEQRES 4 A 277 SER PRO GLY SER ALA PRO VAL THR VAL ILE TYR GLU ASN SEQRES 5 A 277 THR LYS ARG PRO SER ASN ILE PRO SER ARG PHE SER GLY SEQRES 6 A 277 SER LYS SER GLY SER THR ALA THR LEU THR ILE THR GLY SEQRES 7 A 277 VAL ARG ALA GLU ASP GLU ALA VAL TYR TYR CYS GLY SER SEQRES 8 A 277 ALA ASP ASP ASN MET ASN PRO THR ILE PHE GLY ALA GLY SEQRES 9 A 277 THR THR LEU THR VAL LEU GLY GLN SER SER ARG SER SER SEQRES 10 A 277 GLY GLY GLY GLY SER GLY GLY GLY GLY SER SER ALA VAL SEQRES 11 A 277 THR LEU ASP GLU SER GLY GLY GLY LEU GLN THR PRO GLY SEQRES 12 A 277 GLY ALA LEU SER LEU VAL CYS LYS ALA SER GLY PHE THR SEQRES 13 A 277 PHE SER SER TYR GLY MET GLN TRP VAL ARG GLN ALA PRO SEQRES 14 A 277 GLY LYS GLY LEU GLU TRP VAL ALA GLY ILE GLN ASN ASP SEQRES 15 A 277 ASP THR GLY THR TYR TYR GLY ALA ALA VAL LYS GLY ARG SEQRES 16 A 277 ALA THR ILE SER ARG ASP ASN GLY GLN SER THR VAL ARG SEQRES 17 A 277 LEU GLN LEU ASN ASN LEU ARG ALA GLU ASP THR GLY THR SEQRES 18 A 277 TYR TYR CYS ALA LYS ASP ALA SER SER ASP GLY GLY TYR SEQRES 19 A 277 GLY GLY ASP SER ILE ASP ALA TRP GLY HIS GLY THR GLU SEQRES 20 A 277 VAL ILE VAL SER SER THR SER GLY GLN ALA GLY GLN HIS SEQRES 21 A 277 HIS HIS HIS HIS HIS GLY ALA TYR PRO TYR ASP VAL PRO SEQRES 22 A 277 ASP TYR ALA SER SEQRES 1 C 13 LYS ILE SER ALA SER ARG LYS LEU GLN LEU LYS THR LEU HET K A 301 1 HET K A 302 1 HET PO4 A 303 5 HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 K 2(K 1+) FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *448(H2 O) HELIX 1 AA1 ARG A 80 GLU A 84 5 5 HELIX 2 AA2 THR A 156 TYR A 160 5 5 HELIX 3 AA3 ALA A 190 LYS A 193 5 4 HELIX 4 AA4 ARG A 215 THR A 219 5 5 HELIX 5 AA5 SER C 42 THR C 51 1 10 SHEET 1 AA1 5 SER A 7 ALA A 10 0 SHEET 2 AA1 5 THR A 105 VAL A 109 1 O THR A 108 N VAL A 8 SHEET 3 AA1 5 ALA A 85 SER A 91 -1 N ALA A 85 O LEU A 107 SHEET 4 AA1 5 GLY A 34 GLN A 38 -1 N TYR A 36 O TYR A 88 SHEET 5 AA1 5 VAL A 46 ILE A 49 -1 O VAL A 46 N GLN A 37 SHEET 1 AA2 4 SER A 7 ALA A 10 0 SHEET 2 AA2 4 THR A 105 VAL A 109 1 O THR A 108 N VAL A 8 SHEET 3 AA2 4 ALA A 85 SER A 91 -1 N ALA A 85 O LEU A 107 SHEET 4 AA2 4 ILE A 100 PHE A 101 -1 O ILE A 100 N SER A 91 SHEET 1 AA3 3 THR A 15 CYS A 20 0 SHEET 2 AA3 3 THR A 71 THR A 77 -1 O LEU A 74 N ILE A 18 SHEET 3 AA3 3 PHE A 63 SER A 68 -1 N SER A 64 O THR A 75 SHEET 1 AA4 4 THR A 131 SER A 135 0 SHEET 2 AA4 4 LEU A 146 SER A 153 -1 O VAL A 149 N SER A 135 SHEET 3 AA4 4 THR A 206 LEU A 211 -1 O LEU A 209 N LEU A 148 SHEET 4 AA4 4 ALA A 196 ASP A 201 -1 N THR A 197 O GLN A 210 SHEET 1 AA5 6 GLY A 138 GLN A 140 0 SHEET 2 AA5 6 THR A 246 VAL A 250 1 O ILE A 249 N GLY A 138 SHEET 3 AA5 6 GLY A 220 ASP A 227 -1 N GLY A 220 O VAL A 248 SHEET 4 AA5 6 MET A 162 GLN A 167 -1 N VAL A 165 O TYR A 223 SHEET 5 AA5 6 LEU A 173 ILE A 179 -1 O GLU A 174 N ARG A 166 SHEET 6 AA5 6 TYR A 187 TYR A 188 -1 O TYR A 187 N GLY A 178 SHEET 1 AA6 4 GLY A 138 GLN A 140 0 SHEET 2 AA6 4 THR A 246 VAL A 250 1 O ILE A 249 N GLY A 138 SHEET 3 AA6 4 GLY A 220 ASP A 227 -1 N GLY A 220 O VAL A 248 SHEET 4 AA6 4 ILE A 239 TRP A 242 -1 O ALA A 241 N LYS A 226 SSBOND 1 CYS A 20 CYS A 89 1555 1555 2.09 SSBOND 2 CYS A 150 CYS A 224 1555 1555 2.11 LINK OG SER A 252 K K A 301 1555 1555 2.90 LINK K K A 301 O HOH A 760 1555 1555 3.47 LINK K K A 302 O HOH A 526 1555 1555 3.41 CRYST1 45.800 74.210 75.430 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013257 0.00000