HEADER HYDROLASE 10-AUG-22 8E18 TITLE CRYSTAL STRUCTURE OF APO TNMK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CB03234; SOURCE 3 ORGANISM_TAXID: 1703937; SOURCE 4 GENE: TNMK1, AMK26_32035; SOURCE 5 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1916 KEYWDS BIOSYNTHESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.LIU,C.GUI,B.SHEN REVDAT 3 18-OCT-23 8E18 1 REMARK REVDAT 2 16-NOV-22 8E18 1 JRNL REVDAT 1 09-NOV-22 8E18 0 JRNL AUTH C.GUI,E.KALKREUTER,Y.C.LIU,A.ADHIKARI,C.N.TEIJARO,D.YANG, JRNL AUTH 2 C.CHANG,B.SHEN JRNL TITL INTRAMOLECULAR C-C BOND FORMATION LINKS ANTHRAQUINONE AND JRNL TITL 2 ENEDIYNE SCAFFOLDS IN TIANCIMYCIN BIOSYNTHESIS. JRNL REF J.AM.CHEM.SOC. V. 144 20452 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 36279548 JRNL DOI 10.1021/JACS.2C08957 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 172050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 8587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3567 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000266442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 5UNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 1.0 M SUCCINIC REMARK 280 ACID, PH 7.0, AND 1% W/V PEG 2000 MME, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.19600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.00300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.09800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.00300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.29400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.00300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.00300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.09800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.00300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.00300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.29400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.19600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1008 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1152 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1264 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 HIS A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 473 REMARK 465 ASP A 474 REMARK 465 GLY A 475 REMARK 465 GLY A 476 REMARK 465 PRO A 477 REMARK 465 ALA A 478 REMARK 465 GLY A 479 REMARK 465 GLU A 480 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 PRO A 483 REMARK 465 SER A 484 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 751 O HOH A 1063 1.71 REMARK 500 O HOH A 911 O HOH A 981 1.73 REMARK 500 O HOH A 1063 O HOH A 1328 1.78 REMARK 500 O HOH A 1027 O HOH A 1100 1.85 REMARK 500 O HOH A 672 O HOH A 1007 1.86 REMARK 500 O HOH A 919 O HOH A 1257 1.87 REMARK 500 O HOH A 1078 O HOH A 1105 1.88 REMARK 500 O HOH A 673 O HOH A 983 1.89 REMARK 500 O HOH A 732 O HOH A 1078 1.91 REMARK 500 O HOH A 1196 O HOH A 1311 1.92 REMARK 500 O1S EPE A 502 O HOH A 601 1.94 REMARK 500 O HOH A 1088 O HOH A 1091 1.95 REMARK 500 O HOH A 817 O HOH A 1031 1.98 REMARK 500 OD2 ASP A 72 O HOH A 602 1.99 REMARK 500 O HOH A 870 O HOH A 988 2.01 REMARK 500 O HOH A 1045 O HOH A 1091 2.03 REMARK 500 O HOH A 1043 O HOH A 1324 2.03 REMARK 500 O HOH A 613 O HOH A 1120 2.03 REMARK 500 O HOH A 831 O HOH A 996 2.04 REMARK 500 O HOH A 956 O HOH A 975 2.04 REMARK 500 O HOH A 609 O HOH A 646 2.04 REMARK 500 O HOH A 1022 O HOH A 1043 2.06 REMARK 500 O HOH A 911 O HOH A 1284 2.07 REMARK 500 O HOH A 637 O HOH A 923 2.07 REMARK 500 O HOH A 912 O HOH A 1190 2.08 REMARK 500 O HOH A 634 O HOH A 988 2.08 REMARK 500 O HOH A 1081 O HOH A 1121 2.08 REMARK 500 O HOH A 783 O HOH A 890 2.10 REMARK 500 O HOH A 1215 O HOH A 1222 2.10 REMARK 500 O HOH A 1097 O HOH A 1196 2.10 REMARK 500 O HOH A 647 O HOH A 1020 2.10 REMARK 500 O HOH A 1023 O HOH A 1274 2.11 REMARK 500 O HOH A 601 O HOH A 984 2.11 REMARK 500 O8 EPE A 501 O HOH A 603 2.11 REMARK 500 O HOH A 629 O HOH A 869 2.12 REMARK 500 O HOH A 1072 O HOH A 1093 2.12 REMARK 500 O HOH A 1308 O HOH A 1323 2.12 REMARK 500 O HOH A 807 O HOH A 1236 2.13 REMARK 500 O HOH A 1022 O HOH A 1081 2.14 REMARK 500 O HOH A 668 O HOH A 1247 2.14 REMARK 500 O HOH A 621 O HOH A 1100 2.15 REMARK 500 O HOH A 1354 O HOH A 1356 2.15 REMARK 500 O HOH A 1037 O HOH A 1227 2.16 REMARK 500 O HOH A 625 O HOH A 975 2.16 REMARK 500 O HOH A 1226 O HOH A 1300 2.16 REMARK 500 O HOH A 1109 O HOH A 1248 2.16 REMARK 500 O HOH A 1274 O HOH A 1283 2.17 REMARK 500 O HOH A 674 O HOH A 839 2.17 REMARK 500 O HOH A 645 O HOH A 1057 2.17 REMARK 500 O HOH A 952 O HOH A 1170 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 963 O HOH A 983 6444 2.01 REMARK 500 O HOH A 763 O HOH A 1099 6444 2.09 REMARK 500 O HOH A 1198 O HOH A 1365 7645 2.16 REMARK 500 O HOH A 850 O HOH A 1059 3545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 109 79.71 -106.15 REMARK 500 LEU A 122 35.89 -96.13 REMARK 500 ALA A 149 22.68 -141.96 REMARK 500 SER A 183 -119.35 62.93 REMARK 500 PHE A 196 20.46 -140.44 REMARK 500 ASP A 201 -86.37 -93.35 REMARK 500 SER A 207 78.43 63.85 REMARK 500 LEU A 422 43.40 -108.01 REMARK 500 ARG A 438 96.50 77.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1354 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1355 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1356 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1357 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1360 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1363 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1364 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A1365 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1366 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A1367 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1368 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A1372 DISTANCE = 8.47 ANGSTROMS DBREF1 8E18 A 1 484 UNP A0A125SA14_9ACTN DBREF2 8E18 A A0A125SA14 1 484 SEQRES 1 A 484 MET THR GLU HIS ARG SER VAL ARG PHE SER ALA PRO ARG SEQRES 2 A 484 PRO SER TRP ARG PRO ALA GLY ASP ASP THR PRO LEU ALA SEQRES 3 A 484 GLY LEU GLU CYS ALA THR VAL THR VAL PRO VAL ASP HIS SEQRES 4 A 484 ALA ARG PRO ASP GLY PRO THR LEU GLU VAL ALA LEU ALA SEQRES 5 A 484 ARG HIS PRO ALA ARG SER ALA GLY ARG ARG ARG GLY VAL SEQRES 6 A 484 LEU LEU VAL GLY PRO ASP ASP PRO GLY ASN PRO GLY THR SEQRES 7 A 484 LEU LEU VAL PRO GLN LEU VAL ARG ASP LEU PRO ALA ASP SEQRES 8 A 484 VAL LEU ASP GLY TYR ASP VAL VAL GLY PHE ASP HIS ARG SEQRES 9 A 484 PHE SER GLY GLY SER ALA PRO LEU SER CYS GLY LEU THR SEQRES 10 A 484 PRO ASP GLN TRP LEU TRP ILE PHE HIS ARG PRO GLN ASP SEQRES 11 A 484 VAL GLU SER GLU ALA ARG PHE GLN ARG ALA VAL VAL GLU SEQRES 12 A 484 ARG CYS PHE ASP ALA ALA GLY ASP VAL LEU PRO TYR LEU SEQRES 13 A 484 THR SER ARG ASP ILE ALA ARG ASP MET ASP VAL ILE ARG SEQRES 14 A 484 ARG ALA LEU GLY GLU ASP ARG ILE SER TYR LEU GLY HIS SEQRES 15 A 484 SER TYR GLY SER TYR LEU GLY ALA VAL TRP THR GLN MET SEQRES 16 A 484 PHE GLY GLU HIS ALA ASP ARG VAL VAL LEU ASP SER VAL SEQRES 17 A 484 ILE ASP PRO SER SER VAL TRP ARG ARG MET PHE LEU ASP SEQRES 18 A 484 TYR ALA VAL SER CYS GLU ALA ALA LEU GLU ARG TRP ALA SEQRES 19 A 484 HIS TRP ALA ALA GLU ARG ASP GLY GLU LEU ASP LEU GLY SEQRES 20 A 484 ARG ASP ALA PRO THR VAL ARG ALA ALA LEU ASP ALA LEU SEQRES 21 A 484 ALA GLY ARG ALA ASP ARG GLU PRO LEU PRO VAL ALA GLY SEQRES 22 A 484 MET PRO VAL ASP GLY THR MET LEU ARG LEU PHE THR MET SEQRES 23 A 484 VAL LEU LEU SER SER ASP ARG ALA TRP GLY PHE LEU GLY SEQRES 24 A 484 ASP ILE VAL ARG ALA ALA VAL HIS GLY ASP GLU ALA ALA SEQRES 25 A 484 PRO SER THR LEU ARG ALA LEU GLY ALA MET PHE GLY ARG SEQRES 26 A 484 GLY LYS GLU GLU SER GLY ALA VAL ALA GLN LEU GLY VAL SEQRES 27 A 484 LEU CYS GLY ASP ALA ALA TRP PRO ARG ASP MET GLU VAL SEQRES 28 A 484 TYR ARG ARG ASP LEU ALA GLY HIS GLY ALA ARG HIS PRO SEQRES 29 A 484 PHE ILE GLY PRO ALA MET ALA GLY PRO LYS ALA GLY ALA SEQRES 30 A 484 PHE TRP PRO VAL PRO PRO ALA GLU PRO VAL THR VAL LEU SEQRES 31 A 484 GLY ALA ASP ASN ARG ALA GLU SER VAL LEU LEU VAL GLN SEQRES 32 A 484 SER GLU GLN ASP MET PHE THR PRO ALA ARG GLY ALA ARG SEQRES 33 A 484 ARG MET ARG GLU LEU LEU ALA HIS ASN THR ARG LEU VAL SEQRES 34 A 484 THR LEU ALA GLY ALA VAL GLN HIS ARG VAL PHE PRO PHE SEQRES 35 A 484 HIS GLY ASP PRO GLY VAL ASN ARG ALA ALA ALA ALA TYR SEQRES 36 A 484 LEU LEU THR GLY LYS LEU PRO ASP THR ASP LEU THR LEU SEQRES 37 A 484 ARG ALA ALA ALA ALA ASP GLY GLY PRO ALA GLY GLU GLY SEQRES 38 A 484 SER PRO SER HET EPE A 501 15 HET EPE A 502 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 EPE 2(C8 H18 N2 O4 S) FORMUL 4 HOH *772(H2 O) HELIX 1 AA1 PRO A 76 THR A 78 5 3 HELIX 2 AA2 LEU A 79 LEU A 88 1 10 HELIX 3 AA3 PRO A 89 GLY A 95 1 7 HELIX 4 AA4 THR A 117 LEU A 122 1 6 HELIX 5 AA5 ASP A 130 GLY A 150 1 21 HELIX 6 AA6 VAL A 152 LEU A 156 5 5 HELIX 7 AA7 THR A 157 GLY A 173 1 17 HELIX 8 AA8 SER A 183 GLY A 197 1 15 HELIX 9 AA9 ASP A 210 VAL A 214 5 5 HELIX 10 AB1 TRP A 215 GLU A 239 1 25 HELIX 11 AB2 ARG A 240 ASP A 245 1 6 HELIX 12 AB3 ASP A 249 GLU A 267 1 19 HELIX 13 AB4 ASP A 277 SER A 290 1 14 HELIX 14 AB5 SER A 291 ARG A 293 5 3 HELIX 15 AB6 ALA A 294 GLY A 308 1 15 HELIX 16 AB7 ALA A 312 GLY A 324 1 13 HELIX 17 AB8 GLU A 328 ASP A 342 1 15 HELIX 18 AB9 ASP A 348 GLY A 358 1 11 HELIX 19 AC1 GLY A 358 HIS A 363 1 6 HELIX 20 AC2 ILE A 366 GLY A 372 1 7 HELIX 21 AC3 LYS A 374 TRP A 379 5 6 HELIX 22 AC4 PRO A 411 LEU A 422 1 12 HELIX 23 AC5 ASP A 445 GLY A 459 1 15 SHEET 1 AA110 ARG A 17 PRO A 18 0 SHEET 2 AA110 GLU A 29 PRO A 36 -1 O CYS A 30 N ARG A 17 SHEET 3 AA110 THR A 46 HIS A 54 -1 O LEU A 51 N ALA A 31 SHEET 4 AA110 TYR A 96 PHE A 101 -1 O VAL A 98 N HIS A 54 SHEET 5 AA110 GLY A 64 VAL A 68 1 N LEU A 66 O ASP A 97 SHEET 6 AA110 ILE A 177 HIS A 182 1 O SER A 178 N LEU A 67 SHEET 7 AA110 ALA A 200 ASP A 206 1 O VAL A 204 N TYR A 179 SHEET 8 AA110 VAL A 399 GLN A 406 1 O LEU A 400 N VAL A 203 SHEET 9 AA110 THR A 426 VAL A 435 1 O ARG A 427 N LEU A 401 SHEET 10 AA110 LEU A 466 ARG A 469 1 O LEU A 468 N ALA A 432 SHEET 1 AA2 2 LEU A 269 VAL A 271 0 SHEET 2 AA2 2 MET A 274 VAL A 276 -1 O VAL A 276 N LEU A 269 CISPEP 1 VAL A 214 TRP A 215 0 -22.09 CISPEP 2 PHE A 440 PRO A 441 0 0.14 CRYST1 86.006 86.006 132.392 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007553 0.00000