HEADER DE NOVO PROTEIN 10-AUG-22 8E1E TITLE SCAFFOLDING PROTEIN FUNCTIONAL SITES USING DEEP LEARNING COMPND MOL_ID: 1; COMPND 2 MOLECULE: SG122_C3; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN, SCAFFOLDING PROTEIN, LIGAND BINDING, POCKET, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,S.GERBEN,D.BAKER REVDAT 1 16-AUG-23 8E1E 0 JRNL AUTH S.R.GERBEN,A.J.BORST,D.R.HICKS,I.MOCZYGEMBA,D.FELDMAN, JRNL AUTH 2 B.COVENTRY,W.YANG,A.K.BERA,M.MIRANDA,A.KANG,H.NGUYEN,D.BAKER JRNL TITL DESIGN OF DIVERSE ASYMMETRIC POCKETS IN DE NOVO JRNL TITL 2 HOMO-OLIGOMERIC PROTEINS. JRNL REF BIOCHEMISTRY V. 62 358 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 36627259 JRNL DOI 10.1021/ACS.BIOCHEM.2C00497 REMARK 2 REMARK 2 RESOLUTION. 4.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.406 REMARK 3 R VALUE (WORKING SET) : 0.405 REMARK 3 FREE R VALUE : 0.427 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 95.5700 - 9.2000 0.99 2740 132 0.3804 0.3975 REMARK 3 2 9.1800 - 7.3000 1.00 2783 107 0.4016 0.4162 REMARK 3 3 7.2900 - 6.3800 1.00 2697 170 0.4698 0.5907 REMARK 3 4 6.3700 - 5.7900 1.00 2791 126 0.4615 0.3741 REMARK 3 5 5.7900 - 5.3800 1.00 2785 104 0.4302 0.4335 REMARK 3 6 5.3700 - 5.0600 1.00 2673 178 0.4366 0.4257 REMARK 3 7 5.0600 - 4.8100 1.00 2734 146 0.4192 0.3917 REMARK 3 8 4.8000 - 4.6000 1.00 2697 163 0.4080 0.4338 REMARK 3 9 4.6000 - 4.4200 1.00 2792 110 0.4059 0.4079 REMARK 3 10 4.4200 - 4.2700 0.97 2652 196 0.3962 0.4487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.947 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 54.173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 281.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 249.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5661 REMARK 3 ANGLE : 0.702 7557 REMARK 3 CHIRALITY : 0.039 867 REMARK 3 PLANARITY : 0.004 969 REMARK 3 DIHEDRAL : 4.885 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28776 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.260 REMARK 200 RESOLUTION RANGE LOW (A) : 117.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 40.90 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DESIGNED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHOUS C9, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 117.04600 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 117.04600 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 117.04600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 117.04600 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 117.04600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 117.04600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 GLU C -8 REMARK 465 ASN C -7 REMARK 465 LEU C -6 REMARK 465 TYR C -5 REMARK 465 PHE C -4 REMARK 465 GLN C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 2 OE1 GLU B 5 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 138 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 137 -130.85 71.82 REMARK 500 LEU A 138 -119.71 48.38 REMARK 500 PHE A 139 -47.87 65.85 REMARK 500 GLU A 159 34.98 -88.61 REMARK 500 VAL A 161 -44.98 66.30 REMARK 500 ALA A 184 65.26 -169.18 REMARK 500 LYS A 185 -107.56 -88.67 REMARK 500 ASP A 189 67.07 -11.11 REMARK 500 GLU A 190 -1.51 69.08 REMARK 500 GLU A 191 -6.16 91.80 REMARK 500 LEU A 192 42.33 -85.16 REMARK 500 LYS B 137 -88.77 -127.63 REMARK 500 LEU B 138 -41.90 -22.19 REMARK 500 LYS B 162 50.19 -64.38 REMARK 500 ARG B 163 -40.46 -160.17 REMARK 500 ALA B 206 32.58 -64.52 REMARK 500 GLU B 208 101.18 -55.65 REMARK 500 GLU B 212 14.63 47.55 REMARK 500 GLU B 213 -42.76 -138.74 REMARK 500 GLU C 2 18.30 -69.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 8E1E A -10 232 PDB 8E1E 8E1E -10 232 DBREF 8E1E B -10 232 PDB 8E1E 8E1E -10 232 DBREF 8E1E C -10 232 PDB 8E1E 8E1E -10 232 SEQRES 1 A 243 GLY SER GLU ASN LEU TYR PHE GLN GLY SER GLY SER GLU SEQRES 2 A 243 GLU LEU GLU LYS GLN ALA LEU VAL TYR ALA VAL GLN VAL SEQRES 3 A 243 LEU LEU ILE ALA LEU ARG ALA ILE LEU GLN GLY ASP GLU SEQRES 4 A 243 LYS LEU PHE LYS LEU ALA GLU TRP ALA VAL GLU LEU ALA SEQRES 5 A 243 ILE LYS ALA LEU GLN ASN GLY ASP GLU ARG GLN VAL GLN SEQRES 6 A 243 ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU ILE GLN SEQRES 7 A 243 ILE VAL LYS GLU ILE ALA GLU GLU ALA ARG LYS GLN GLY SEQRES 8 A 243 ASP GLU LYS LEU PHE GLU LEU ALA ARG TRP ALA ILE GLU SEQRES 9 A 243 LEU ALA GLU LYS ALA ILE GLU ARG GLY ASP GLU GLU SER SEQRES 10 A 243 VAL LYS ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU SEQRES 11 A 243 ILE GLN ILE VAL LYS LYS ILE ALA GLU LYS ALA LYS ARG SEQRES 12 A 243 GLN GLY ASP ASP LYS LEU PHE LYS LEU ALA GLU TRP ALA SEQRES 13 A 243 ILE GLU LEU ALA GLU ARG ALA ILE GLU GLU GLY ASP GLU SEQRES 14 A 243 GLU LYS VAL LYS ARG ALA ILE LEU PHE MET GLU ALA VAL SEQRES 15 A 243 ILE LEU ILE GLN LEU VAL LYS GLU ILE ALA LYS LYS ALA SEQRES 16 A 243 LYS GLU GLN GLY ASP GLU GLU LEU PHE GLN ARG ALA GLU SEQRES 17 A 243 GLU ALA ILE LYS ASP ALA GLU LYS ALA ILE GLU GLU GLY SEQRES 18 A 243 ASP GLU GLU LYS VAL LYS GLU ALA ILE LYS LYS MET LYS SEQRES 19 A 243 GLU VAL ILE ARG ILE GLN GLU ARG LYS SEQRES 1 B 243 GLY SER GLU ASN LEU TYR PHE GLN GLY SER GLY SER GLU SEQRES 2 B 243 GLU LEU GLU LYS GLN ALA LEU VAL TYR ALA VAL GLN VAL SEQRES 3 B 243 LEU LEU ILE ALA LEU ARG ALA ILE LEU GLN GLY ASP GLU SEQRES 4 B 243 LYS LEU PHE LYS LEU ALA GLU TRP ALA VAL GLU LEU ALA SEQRES 5 B 243 ILE LYS ALA LEU GLN ASN GLY ASP GLU ARG GLN VAL GLN SEQRES 6 B 243 ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU ILE GLN SEQRES 7 B 243 ILE VAL LYS GLU ILE ALA GLU GLU ALA ARG LYS GLN GLY SEQRES 8 B 243 ASP GLU LYS LEU PHE GLU LEU ALA ARG TRP ALA ILE GLU SEQRES 9 B 243 LEU ALA GLU LYS ALA ILE GLU ARG GLY ASP GLU GLU SER SEQRES 10 B 243 VAL LYS ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU SEQRES 11 B 243 ILE GLN ILE VAL LYS LYS ILE ALA GLU LYS ALA LYS ARG SEQRES 12 B 243 GLN GLY ASP ASP LYS LEU PHE LYS LEU ALA GLU TRP ALA SEQRES 13 B 243 ILE GLU LEU ALA GLU ARG ALA ILE GLU GLU GLY ASP GLU SEQRES 14 B 243 GLU LYS VAL LYS ARG ALA ILE LEU PHE MET GLU ALA VAL SEQRES 15 B 243 ILE LEU ILE GLN LEU VAL LYS GLU ILE ALA LYS LYS ALA SEQRES 16 B 243 LYS GLU GLN GLY ASP GLU GLU LEU PHE GLN ARG ALA GLU SEQRES 17 B 243 GLU ALA ILE LYS ASP ALA GLU LYS ALA ILE GLU GLU GLY SEQRES 18 B 243 ASP GLU GLU LYS VAL LYS GLU ALA ILE LYS LYS MET LYS SEQRES 19 B 243 GLU VAL ILE ARG ILE GLN GLU ARG LYS SEQRES 1 C 243 GLY SER GLU ASN LEU TYR PHE GLN GLY SER GLY SER GLU SEQRES 2 C 243 GLU LEU GLU LYS GLN ALA LEU VAL TYR ALA VAL GLN VAL SEQRES 3 C 243 LEU LEU ILE ALA LEU ARG ALA ILE LEU GLN GLY ASP GLU SEQRES 4 C 243 LYS LEU PHE LYS LEU ALA GLU TRP ALA VAL GLU LEU ALA SEQRES 5 C 243 ILE LYS ALA LEU GLN ASN GLY ASP GLU ARG GLN VAL GLN SEQRES 6 C 243 ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU ILE GLN SEQRES 7 C 243 ILE VAL LYS GLU ILE ALA GLU GLU ALA ARG LYS GLN GLY SEQRES 8 C 243 ASP GLU LYS LEU PHE GLU LEU ALA ARG TRP ALA ILE GLU SEQRES 9 C 243 LEU ALA GLU LYS ALA ILE GLU ARG GLY ASP GLU GLU SER SEQRES 10 C 243 VAL LYS ARG ALA ILE LEU PHE MET GLN ALA VAL ILE LEU SEQRES 11 C 243 ILE GLN ILE VAL LYS LYS ILE ALA GLU LYS ALA LYS ARG SEQRES 12 C 243 GLN GLY ASP ASP LYS LEU PHE LYS LEU ALA GLU TRP ALA SEQRES 13 C 243 ILE GLU LEU ALA GLU ARG ALA ILE GLU GLU GLY ASP GLU SEQRES 14 C 243 GLU LYS VAL LYS ARG ALA ILE LEU PHE MET GLU ALA VAL SEQRES 15 C 243 ILE LEU ILE GLN LEU VAL LYS GLU ILE ALA LYS LYS ALA SEQRES 16 C 243 LYS GLU GLN GLY ASP GLU GLU LEU PHE GLN ARG ALA GLU SEQRES 17 C 243 GLU ALA ILE LYS ASP ALA GLU LYS ALA ILE GLU GLU GLY SEQRES 18 C 243 ASP GLU GLU LYS VAL LYS GLU ALA ILE LYS LYS MET LYS SEQRES 19 C 243 GLU VAL ILE ARG ILE GLN GLU ARG LYS HELIX 1 AA1 SER A 1 GLY A 26 1 26 HELIX 2 AA2 GLU A 28 GLN A 46 1 19 HELIX 3 AA3 ASP A 49 GLN A 79 1 31 HELIX 4 AA4 ASP A 81 GLY A 102 1 22 HELIX 5 AA5 ASP A 103 GLN A 133 1 31 HELIX 6 AA6 PHE A 139 GLY A 156 1 18 HELIX 7 AA7 VAL A 161 LYS A 183 1 23 HELIX 8 AA8 GLY A 188 GLU A 191 5 4 HELIX 9 AA9 LEU A 192 GLY A 210 1 19 HELIX 10 AB1 LYS A 214 GLU A 230 1 17 HELIX 11 AB2 GLU B 3 GLN B 25 1 23 HELIX 12 AB3 GLU B 28 GLN B 46 1 19 HELIX 13 AB4 GLU B 50 GLN B 79 1 30 HELIX 14 AB5 ASP B 81 GLY B 102 1 22 HELIX 15 AB6 ASP B 103 GLN B 133 1 31 HELIX 16 AB7 LYS B 137 GLU B 154 1 18 HELIX 17 AB8 ASP B 157 GLN B 187 1 31 HELIX 18 AB9 PHE B 193 LYS B 205 1 13 HELIX 19 AC1 ALA B 206 GLU B 208 5 3 HELIX 20 AC2 GLU B 213 GLU B 230 1 18 HELIX 21 AC3 GLU C 3 GLY C 26 1 24 HELIX 22 AC4 GLU C 28 GLN C 46 1 19 HELIX 23 AC5 GLU C 50 GLN C 79 1 30 HELIX 24 AC6 ASP C 81 GLY C 102 1 22 HELIX 25 AC7 ASP C 103 GLN C 133 1 31 HELIX 26 AC8 ASP C 136 GLY C 156 1 21 HELIX 27 AC9 ASP C 157 ALA C 184 1 28 HELIX 28 AD1 ASP C 189 GLY C 210 1 22 HELIX 29 AD2 GLU C 213 GLU C 230 1 18 CRYST1 234.092 234.092 234.092 90.00 90.00 90.00 I 2 3 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004272 0.00000 MTRIX1 1 -0.168559 -0.738593 -0.652739 -48.29788 1 MTRIX2 1 -0.505139 0.633373 -0.586236 -10.63242 1 MTRIX3 1 0.846417 0.230908 -0.479854 100.48357 1 MTRIX1 2 -0.188428 -0.456297 0.869648 -99.69197 1 MTRIX2 2 -0.733639 0.654088 0.184235 -49.64349 1 MTRIX3 2 -0.652892 -0.603293 -0.458005 9.40321 1