HEADER TRANSFERASE 10-AUG-22 8E1H TITLE ASP1 KINASE IN COMPLEX WITH ADP MG 5-IP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL- COMPND 3 PENTAKISPHOSPHATE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CORTICAL ACTIN CYTOSKELETON PROTEIN ASP1,INSP6 AND PP-IP5 COMPND 6 KINASE; COMPND 7 EC: 2.7.4.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: ASP1, VIP1, SPCC1672.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,S.SHUMAN,B.BENJAMIN REVDAT 4 25-OCT-23 8E1H 1 REMARK REVDAT 3 04-JAN-23 8E1H 1 JRNL REVDAT 2 21-DEC-22 8E1H 1 JRNL REVDAT 1 30-NOV-22 8E1H 0 JRNL AUTH B.BENJAMIN,Y.GOLDGUR,N.JORK,H.J.JESSEN,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURES OF FISSION YEAST INOSITOL PYROPHOSPHATE KINASE JRNL TITL 2 ASP1 IN LIGAND-FREE, SUBSTRATE-BOUND, AND PRODUCT-BOUND JRNL TITL 3 STATES. JRNL REF MBIO V. 13 08722 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36468882 JRNL DOI 10.1128/MBIO.03087-22 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 52160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4400 - 4.5800 0.95 3704 147 0.1749 0.2128 REMARK 3 2 4.5800 - 3.6300 0.91 3481 139 0.1592 0.1912 REMARK 3 3 3.6300 - 3.1700 0.90 3411 145 0.1812 0.2176 REMARK 3 4 3.1700 - 2.8800 0.89 3409 140 0.2055 0.2447 REMARK 3 5 2.8800 - 2.6800 0.93 3531 133 0.2125 0.2648 REMARK 3 6 2.6800 - 2.5200 0.96 3642 148 0.2194 0.2458 REMARK 3 7 2.5200 - 2.3900 0.96 3617 137 0.2161 0.2392 REMARK 3 8 2.3900 - 2.2900 0.97 3714 147 0.2193 0.2143 REMARK 3 9 2.2900 - 2.2000 0.98 3675 148 0.2156 0.2741 REMARK 3 10 2.2000 - 2.1200 0.96 3596 148 0.2281 0.3090 REMARK 3 11 2.1200 - 2.0600 0.97 3679 147 0.2465 0.3173 REMARK 3 12 2.0600 - 2.0000 0.98 3710 142 0.2504 0.2791 REMARK 3 13 2.0000 - 1.9500 0.98 3686 138 0.2549 0.2970 REMARK 3 14 1.9500 - 1.9000 0.88 3293 153 0.2835 0.3206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5378 REMARK 3 ANGLE : 1.067 7282 REMARK 3 CHIRALITY : 0.064 784 REMARK 3 PLANARITY : 0.008 937 REMARK 3 DIHEDRAL : 11.964 730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7349 -26.8220 3.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.3694 T22: 0.2903 REMARK 3 T33: 0.3528 T12: 0.0355 REMARK 3 T13: 0.0183 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.0621 L22: 1.1923 REMARK 3 L33: 1.0077 L12: -0.5356 REMARK 3 L13: -0.8617 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: 0.0199 S13: -0.1637 REMARK 3 S21: -0.0181 S22: 0.1011 S23: -0.2380 REMARK 3 S31: 0.2032 S32: 0.0986 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2626 -3.9687 15.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.2669 REMARK 3 T33: 0.2501 T12: 0.0387 REMARK 3 T13: 0.0077 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.2127 L22: 1.0733 REMARK 3 L33: 1.1490 L12: 0.1012 REMARK 3 L13: -0.1001 L23: 0.2090 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0411 S13: -0.0053 REMARK 3 S21: -0.0568 S22: 0.0031 S23: -0.0179 REMARK 3 S31: -0.1046 S32: -0.0173 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5268 -20.1612 6.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.3474 T22: 0.3055 REMARK 3 T33: 0.2546 T12: 0.0227 REMARK 3 T13: -0.0154 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.8294 L22: 1.0898 REMARK 3 L33: 1.1938 L12: 0.2677 REMARK 3 L13: -0.5776 L23: 0.5048 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0318 S13: -0.0168 REMARK 3 S21: -0.1672 S22: -0.0653 S23: 0.0031 REMARK 3 S31: 0.0072 S32: -0.2689 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9775 -22.2618 35.8074 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.2866 REMARK 3 T33: 0.3374 T12: -0.0251 REMARK 3 T13: -0.0197 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.9898 L22: 1.5099 REMARK 3 L33: 0.9385 L12: -0.4186 REMARK 3 L13: -0.0947 L23: 0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: 0.1715 S13: 0.2403 REMARK 3 S21: -0.1808 S22: 0.0306 S23: 0.0692 REMARK 3 S31: -0.3651 S32: -0.0358 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6476 -29.0181 42.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.2916 REMARK 3 T33: 0.2858 T12: -0.0265 REMARK 3 T13: -0.0222 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: -0.1273 L22: 0.2807 REMARK 3 L33: -0.0146 L12: -0.2248 REMARK 3 L13: -0.1603 L23: 0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0552 S13: -0.1682 REMARK 3 S21: 0.1523 S22: -0.0031 S23: -0.0275 REMARK 3 S31: 0.1615 S32: -0.0678 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7684 -45.6351 39.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.2841 REMARK 3 T33: 0.2598 T12: -0.0305 REMARK 3 T13: 0.0064 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.3187 L22: 0.2342 REMARK 3 L33: 0.7553 L12: -0.7466 REMARK 3 L13: -0.4343 L23: 0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.1602 S13: -0.1169 REMARK 3 S21: 0.0875 S22: 0.0425 S23: -0.0356 REMARK 3 S31: -0.1714 S32: 0.2252 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7758 -48.8732 21.5792 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2418 REMARK 3 T33: 0.2314 T12: 0.0079 REMARK 3 T13: -0.0186 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.1459 L22: 1.0758 REMARK 3 L33: 1.2715 L12: 0.3939 REMARK 3 L13: 0.0072 L23: -0.3298 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0033 S13: -0.0461 REMARK 3 S21: -0.1470 S22: 0.1105 S23: -0.0308 REMARK 3 S31: -0.1043 S32: 0.0898 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1720 -48.8107 20.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2895 REMARK 3 T33: 0.2352 T12: -0.0274 REMARK 3 T13: -0.0108 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 0.3956 L22: 1.0753 REMARK 3 L33: 0.3389 L12: -0.4210 REMARK 3 L13: -0.1393 L23: -0.1483 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.1268 S13: -0.1617 REMARK 3 S21: -0.1884 S22: 0.0116 S23: 0.0694 REMARK 3 S31: 0.0868 S32: -0.0451 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0929 -46.5045 25.7446 REMARK 3 T TENSOR REMARK 3 T11: 0.3738 T22: 0.3790 REMARK 3 T33: 0.3584 T12: 0.0139 REMARK 3 T13: -0.0036 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.6328 L22: 0.2819 REMARK 3 L33: 0.1080 L12: 0.0581 REMARK 3 L13: 0.1897 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.2300 S12: 0.1809 S13: 0.1604 REMARK 3 S21: -0.2046 S22: 0.0720 S23: -0.2146 REMARK 3 S31: -0.1881 S32: -0.2226 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9965 -42.0466 34.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.2718 REMARK 3 T33: 0.2782 T12: -0.0223 REMARK 3 T13: -0.0062 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.3972 L22: 0.9586 REMARK 3 L33: 0.5252 L12: 0.1263 REMARK 3 L13: -0.1860 L23: 0.2233 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: 0.0049 S13: -0.0595 REMARK 3 S21: 0.1004 S22: -0.0098 S23: 0.0944 REMARK 3 S31: 0.0499 S32: -0.0212 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: 4NZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE (PH 8.1), 0.15 REMARK 280 M NAF, AND 20% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.56150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 ARG A 363 REMARK 465 HIS A 364 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 ARG B 32 REMARK 465 VAL B 278 REMARK 465 VAL B 279 REMARK 465 ASP B 280 REMARK 465 GLY B 281 REMARK 465 ILE B 282 REMARK 465 VAL B 283 REMARK 465 ARG B 284 REMARK 465 ARG B 285 REMARK 465 ASN B 286 REMARK 465 PRO B 287 REMARK 465 HIS B 288 REMARK 465 GLY B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 ILE B 292 REMARK 465 ARG B 363 REMARK 465 HIS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 600 O HOH B 609 1.84 REMARK 500 O HOH A 612 O HOH A 649 1.86 REMARK 500 OE1 GLU A 100 O HOH A 501 1.87 REMARK 500 O HOH A 593 O HOH B 579 1.88 REMARK 500 O ASP B 342 O HOH B 401 1.88 REMARK 500 O HOH A 606 O HOH A 662 1.89 REMARK 500 OD1 ASN B 349 O HOH B 402 1.90 REMARK 500 O HOH B 444 O HOH B 592 1.90 REMARK 500 O HOH A 677 O HOH A 701 1.95 REMARK 500 NH2 ARG B 352 O HOH B 402 1.97 REMARK 500 O HOH B 585 O HOH B 605 2.03 REMARK 500 O HOH A 538 O HOH A 676 2.03 REMARK 500 O HOH B 497 O HOH B 564 2.07 REMARK 500 O HOH B 557 O HOH B 581 2.07 REMARK 500 O HOH A 658 O HOH A 693 2.08 REMARK 500 O HOH B 548 O HOH B 602 2.12 REMARK 500 O HOH B 526 O HOH B 594 2.12 REMARK 500 O HOH A 611 O HOH A 657 2.12 REMARK 500 O HOH B 578 O HOH B 591 2.13 REMARK 500 O SER B 310 O HOH B 403 2.13 REMARK 500 O HOH B 609 O HOH B 610 2.13 REMARK 500 O HOH A 673 O HOH A 674 2.14 REMARK 500 O HOH B 536 O HOH B 589 2.14 REMARK 500 O HOH B 554 O HOH B 608 2.16 REMARK 500 O43 I7P A 402 O HOH A 502 2.17 REMARK 500 O ASP A 280 O HOH A 503 2.17 REMARK 500 O HOH B 485 O HOH B 589 2.18 REMARK 500 N PHE B 313 O HOH B 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 659 O HOH A 676 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 226 -127.79 58.58 REMARK 500 CYS A 237 -65.68 -146.17 REMARK 500 ASP A 280 -1.37 -144.74 REMARK 500 CYS B 237 -55.93 -140.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD2 REMARK 620 2 ASP A 333 OD2 93.5 REMARK 620 3 ADP A 401 O3B 170.6 94.1 REMARK 620 4 ADP A 401 O2A 98.2 97.8 86.1 REMARK 620 5 HOH A 546 O 84.0 87.9 90.9 173.7 REMARK 620 6 HOH A 610 O 84.8 173.0 87.0 89.1 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD2 REMARK 620 2 ASN A 335 OD1 83.5 REMARK 620 3 ADP A 401 O1B 87.7 168.4 REMARK 620 4 HOH A 530 O 140.1 93.1 88.8 REMARK 620 5 HOH A 665 O 118.4 79.4 111.5 99.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 I7P A 402 O36 REMARK 620 2 I7P A 402 O75 60.2 REMARK 620 N 1 DBREF 8E1H A 31 364 UNP O74429 VIP1_SCHPO 31 364 DBREF 8E1H B 31 364 UNP O74429 VIP1_SCHPO 31 364 SEQADV 8E1H SER A 30 UNP O74429 EXPRESSION TAG SEQADV 8E1H SER B 30 UNP O74429 EXPRESSION TAG SEQRES 1 A 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 A 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 A 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 A 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 A 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 A 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 A 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 A 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 A 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 A 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 A 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 A 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 A 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 A 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 A 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 A 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 A 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 A 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 A 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 A 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 A 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 A 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 A 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 A 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 A 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 A 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS SEQRES 1 B 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 B 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 B 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 B 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 B 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 B 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 B 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 B 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 B 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 B 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 B 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 B 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 B 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 B 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 B 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 B 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 B 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 B 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 B 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 B 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 B 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 B 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 B 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 B 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 B 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 B 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS HET ADP A 401 27 HET I7P A 402 40 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM I7P (1R,2R,3S,4S,5R,6S)-2,3,4,5,6-PENTAKIS(PHOSPHONOOXY) HETNAM 2 I7P CYCLOHEXYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN I7P 1D-MYO-INOSITOL 5-DIPHOSPHATE 1,2,3,4,6- HETSYN 2 I7P PENTAKISPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 I7P C6 H19 O27 P7 FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *416(H2 O) HELIX 1 AA1 MET A 40 ARG A 45 1 6 HELIX 2 AA2 SER A 46 ALA A 58 1 13 HELIX 3 AA3 GLY A 68 GLU A 75 1 8 HELIX 4 AA4 ALA A 76 TRP A 80 5 5 HELIX 5 AA5 PRO A 95 LYS A 107 1 13 HELIX 6 AA6 VAL A 114 TRP A 121 5 8 HELIX 7 AA7 ASP A 122 ILE A 133 1 12 HELIX 8 AA8 ASN A 152 GLY A 164 1 13 HELIX 9 AA9 PRO A 211 GLY A 215 5 5 HELIX 10 AB1 VAL A 253 ASN A 255 5 3 HELIX 11 AB2 SER A 299 PHE A 313 1 15 HELIX 12 AB3 ASN A 343 GLU A 362 1 20 HELIX 13 AB4 MET B 40 ARG B 45 1 6 HELIX 14 AB5 SER B 46 ILE B 57 1 12 HELIX 15 AB6 GLY B 68 GLU B 75 1 8 HELIX 16 AB7 ALA B 76 TRP B 80 5 5 HELIX 17 AB8 PRO B 95 LYS B 107 1 13 HELIX 18 AB9 VAL B 114 TRP B 121 5 8 HELIX 19 AC1 ASP B 122 ILE B 133 1 12 HELIX 20 AC2 ASN B 152 GLY B 164 1 13 HELIX 21 AC3 PRO B 211 GLY B 215 5 5 HELIX 22 AC4 SER B 299 PHE B 313 1 15 HELIX 23 AC5 ASN B 343 GLU B 362 1 20 SHEET 1 AA1 4 GLU A 63 VAL A 66 0 SHEET 2 AA1 4 VAL A 34 CYS A 38 1 N VAL A 35 O GLU A 63 SHEET 3 AA1 4 TYR A 85 CYS A 88 1 O ILE A 87 N GLY A 36 SHEET 4 AA1 4 PHE A 109 CYS A 110 1 O PHE A 109 N LEU A 86 SHEET 1 AA2 6 ARG A 140 CYS A 143 0 SHEET 2 AA2 6 PHE A 245 GLU A 249 -1 O TYR A 247 N LEU A 141 SHEET 3 AA2 6 TYR A 194 PRO A 198 -1 N VAL A 195 O GLU A 248 SHEET 4 AA2 6 TYR A 207 TYR A 209 -1 O TYR A 207 N GLU A 196 SHEET 5 AA2 6 GLY A 218 VAL A 225 -1 O ARG A 219 N ILE A 208 SHEET 6 AA2 6 LYS A 228 ASP A 233 -1 O ASP A 233 N GLY A 218 SHEET 1 AA3 3 VAL A 175 ASP A 179 0 SHEET 2 AA3 3 THR A 182 VAL A 185 -1 O SER A 184 N LYS A 176 SHEET 3 AA3 3 LYS A 188 LYS A 191 -1 O ILE A 190 N LEU A 183 SHEET 1 AA4 5 PHE A 294 ILE A 295 0 SHEET 2 AA4 5 SER A 269 LYS A 275 -1 N THR A 273 O PHE A 294 SHEET 3 AA4 5 GLU A 257 VAL A 264 -1 N ASP A 258 O ARG A 274 SHEET 4 AA4 5 VAL A 317 VAL A 325 -1 O PHE A 320 N VAL A 261 SHEET 5 AA4 5 GLN A 328 GLY A 336 -1 O ASN A 335 N GLY A 319 SHEET 1 AA5 4 GLU B 63 VAL B 66 0 SHEET 2 AA5 4 VAL B 34 CYS B 38 1 N VAL B 35 O GLU B 63 SHEET 3 AA5 4 TYR B 85 CYS B 88 1 O ILE B 87 N CYS B 38 SHEET 4 AA5 4 PHE B 109 CYS B 110 1 O PHE B 109 N LEU B 86 SHEET 1 AA6 6 ARG B 140 CYS B 143 0 SHEET 2 AA6 6 PHE B 245 GLU B 249 -1 O PHE B 245 N CYS B 143 SHEET 3 AA6 6 TYR B 194 PRO B 198 -1 N LYS B 197 O ILE B 246 SHEET 4 AA6 6 TYR B 207 TYR B 209 -1 O TYR B 207 N GLU B 196 SHEET 5 AA6 6 GLY B 218 LYS B 220 -1 O ARG B 219 N ILE B 208 SHEET 6 AA6 6 TYR B 232 ASP B 233 -1 O ASP B 233 N GLY B 218 SHEET 1 AA7 3 VAL B 175 ASP B 179 0 SHEET 2 AA7 3 THR B 182 VAL B 185 -1 O SER B 184 N LYS B 176 SHEET 3 AA7 3 LYS B 188 LYS B 191 -1 O LYS B 188 N VAL B 185 SHEET 1 AA8 5 PHE B 294 ILE B 295 0 SHEET 2 AA8 5 SER B 269 THR B 273 -1 N THR B 273 O PHE B 294 SHEET 3 AA8 5 GLU B 257 VAL B 264 -1 N TYR B 262 O HIS B 270 SHEET 4 AA8 5 VAL B 317 VAL B 325 -1 O CYS B 318 N THR B 263 SHEET 5 AA8 5 GLN B 328 GLY B 336 -1 O ILE B 332 N ASP B 321 LINK OD2 ASP A 321 MG MG A 403 1555 1555 2.05 LINK OD2 ASP A 333 MG MG A 403 1555 1555 2.26 LINK OD2 ASP A 333 MG MG A 404 1555 1555 2.26 LINK OD1 ASN A 335 MG MG A 404 1555 1555 2.48 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.00 LINK O2A ADP A 401 MG MG A 403 1555 1555 2.02 LINK O1B ADP A 401 MG MG A 404 1555 1555 2.35 LINK O36 I7P A 402 MG MG A 405 1555 1555 2.83 LINK O75 I7P A 402 MG MG A 405 1555 1555 2.20 LINK MG MG A 403 O HOH A 546 1555 1555 1.86 LINK MG MG A 403 O HOH A 610 1555 1555 2.21 LINK MG MG A 404 O HOH A 530 1555 1555 2.09 LINK MG MG A 404 O HOH A 665 1555 1555 2.57 CISPEP 1 LYS A 192 PRO A 193 0 2.61 CISPEP 2 LYS B 192 PRO B 193 0 7.02 CRYST1 47.600 87.123 86.025 90.00 94.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021008 0.000000 0.001738 0.00000 SCALE2 0.000000 0.011478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011664 0.00000