HEADER TRANSFERASE 10-AUG-22 8E1I TITLE ASP1 KINASE IN COMPLEX WITH ATP MG 5-IP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL- COMPND 3 PENTAKISPHOSPHATE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CORTICAL ACTIN CYTOSKELETON PROTEIN ASP1,INSP6 AND PP-IP5 COMPND 6 KINASE; COMPND 7 EC: 2.7.4.24; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE/PUCCINIA GRAMINIS SOURCE 3 MIXED DNA LIBRARY; SOURCE 4 ORGANISM_TAXID: 584653; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: ASP1, VIP1, SPCC1672.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INOSITOL PYROPHOSPHOSPHATE IPP KINASE FISSION YEAST, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,S.SHUMAN,B.BENJAMIN REVDAT 4 25-OCT-23 8E1I 1 REMARK REVDAT 3 04-JAN-23 8E1I 1 JRNL REVDAT 2 21-DEC-22 8E1I 1 JRNL REVDAT 1 30-NOV-22 8E1I 0 JRNL AUTH B.BENJAMIN,Y.GOLDGUR,N.JORK,H.J.JESSEN,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURES OF FISSION YEAST INOSITOL PYROPHOSPHATE KINASE JRNL TITL 2 ASP1 IN LIGAND-FREE, SUBSTRATE-BOUND, AND PRODUCT-BOUND JRNL TITL 3 STATES. JRNL REF MBIO V. 13 08722 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36468882 JRNL DOI 10.1128/MBIO.03087-22 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 93269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6700 - 6.0500 1.00 3281 142 0.1658 0.1721 REMARK 3 2 6.0500 - 4.8100 0.98 3200 138 0.1661 0.2063 REMARK 3 3 4.8000 - 4.2000 0.91 3008 134 0.1418 0.1744 REMARK 3 4 4.2000 - 3.8200 0.98 3248 130 0.1564 0.1863 REMARK 3 5 3.8200 - 3.5400 0.99 3262 151 0.1636 0.1668 REMARK 3 6 3.5400 - 3.3300 0.99 3233 145 0.1816 0.2451 REMARK 3 7 3.3300 - 3.1700 0.99 3230 142 0.1851 0.2486 REMARK 3 8 3.1700 - 3.0300 1.00 3302 153 0.2029 0.2358 REMARK 3 9 3.0300 - 2.9100 0.99 3325 134 0.2092 0.2742 REMARK 3 10 2.9100 - 2.8100 1.00 3198 144 0.2212 0.2797 REMARK 3 11 2.8100 - 2.7200 1.00 3356 143 0.2154 0.2961 REMARK 3 12 2.7200 - 2.6500 0.99 3176 162 0.2240 0.2661 REMARK 3 13 2.6500 - 2.5800 0.98 3267 134 0.2205 0.2542 REMARK 3 14 2.5800 - 2.5100 0.96 3066 130 0.2299 0.3055 REMARK 3 15 2.5100 - 2.4600 0.88 2944 127 0.2174 0.3100 REMARK 3 16 2.4600 - 2.4100 0.94 3080 155 0.2372 0.3077 REMARK 3 17 2.4000 - 2.3600 0.97 3245 132 0.2194 0.2499 REMARK 3 18 2.3600 - 2.3100 0.98 3179 137 0.2291 0.3281 REMARK 3 19 2.3100 - 2.2700 0.98 3183 117 0.2295 0.2357 REMARK 3 20 2.2700 - 2.2300 0.96 3181 166 0.2407 0.2851 REMARK 3 21 2.2300 - 2.2000 0.98 3240 144 0.2428 0.2588 REMARK 3 22 2.2000 - 2.1600 0.98 3169 141 0.2432 0.3295 REMARK 3 23 2.1600 - 2.1300 0.98 3267 130 0.2558 0.3465 REMARK 3 24 2.1300 - 2.1000 0.97 3179 144 0.2698 0.2999 REMARK 3 25 2.1000 - 2.0700 0.98 3189 144 0.2820 0.3778 REMARK 3 26 2.0700 - 2.0500 0.97 3199 132 0.2998 0.3091 REMARK 3 27 2.0500 - 2.0200 0.98 3237 142 0.3091 0.3813 REMARK 3 28 2.0200 - 2.0000 0.90 2883 149 0.3151 0.3758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8E1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M BIS-TRIS PROPANE (PH 7.8), 0.1 REMARK 280 M NAF, AND 20% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.24750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 ARG A 363 REMARK 465 HIS A 364 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 ARG B 32 REMARK 465 VAL B 278 REMARK 465 VAL B 279 REMARK 465 ASP B 280 REMARK 465 GLY B 281 REMARK 465 ILE B 282 REMARK 465 VAL B 283 REMARK 465 ARG B 284 REMARK 465 ARG B 285 REMARK 465 ASN B 286 REMARK 465 PRO B 287 REMARK 465 HIS B 288 REMARK 465 GLY B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 ILE B 292 REMARK 465 ARG B 363 REMARK 465 HIS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP B 80 O HOH B 401 1.93 REMARK 500 O HOH B 422 O HOH B 542 1.94 REMARK 500 O HOH B 550 O HOH B 585 1.94 REMARK 500 OD2 ASP A 254 O HOH A 601 1.97 REMARK 500 O HOH B 620 O HOH B 621 2.00 REMARK 500 O HOH B 500 O HOH B 576 2.01 REMARK 500 O HOH A 754 O HOH A 785 2.02 REMARK 500 O HOH A 626 O HOH A 740 2.05 REMARK 500 OE2 GLU A 100 O HOH A 602 2.05 REMARK 500 OD1 ASP B 258 O HOH B 402 2.05 REMARK 500 OD2 ASP B 74 O HOH B 403 2.08 REMARK 500 O ASN B 252 O HOH B 404 2.10 REMARK 500 NE2 GLN B 328 O HOH B 405 2.11 REMARK 500 O HOH B 550 O HOH B 598 2.12 REMARK 500 O HOH A 703 O HOH A 756 2.13 REMARK 500 OD1 ASP A 41 O HOH A 603 2.15 REMARK 500 OE1 GLU A 180 NZ LYS A 212 2.15 REMARK 500 OH TYR B 200 O HOH B 406 2.16 REMARK 500 OE2 GLU A 157 NH1 ARG A 160 2.18 REMARK 500 O HOH A 616 O HOH A 620 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 567 O HOH B 577 1655 2.01 REMARK 500 O HOH A 691 O HOH B 573 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 146 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 186 55.20 39.16 REMARK 500 ALA A 226 -126.68 60.36 REMARK 500 CYS A 237 -59.88 -149.80 REMARK 500 ASP A 280 -1.46 -143.42 REMARK 500 ASN B 227 -0.94 80.82 REMARK 500 CYS B 237 -61.54 -137.87 REMARK 500 SER B 276 160.69 -48.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 146 GLY B 147 -149.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 621 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 622 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 623 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD2 REMARK 620 2 ASP A 333 OD2 99.8 REMARK 620 3 ATP A 502 O3G 83.7 77.1 REMARK 620 4 ATP A 502 O3B 154.0 84.3 72.1 REMARK 620 5 ATP A 502 O1A 109.2 103.3 166.7 94.6 REMARK 620 6 HOH A 693 O 78.2 164.0 87.0 90.8 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD1 REMARK 620 2 ASP A 333 OD2 54.4 REMARK 620 3 ASN A 335 OD1 82.7 86.3 REMARK 620 4 ATP A 502 O1G 159.4 105.0 98.1 REMARK 620 5 ATP A 502 O1B 94.4 96.0 174.3 86.4 REMARK 620 6 HOH A 708 O 73.2 127.7 88.6 127.3 85.9 REMARK 620 N 1 2 3 4 5 DBREF 8E1I A 31 364 UNP O74429 VIP1_SCHPO 31 364 DBREF 8E1I B 31 364 UNP O74429 VIP1_SCHPO 31 364 SEQADV 8E1I SER A 30 UNP O74429 EXPRESSION TAG SEQADV 8E1I ALA A 47 UNP O74429 LYS 47 ENGINEERED MUTATION SEQADV 8E1I ALA A 50 UNP O74429 ARG 50 ENGINEERED MUTATION SEQADV 8E1I SER B 30 UNP O74429 EXPRESSION TAG SEQADV 8E1I ALA B 47 UNP O74429 LYS 47 ENGINEERED MUTATION SEQADV 8E1I ALA B 50 UNP O74429 ARG 50 ENGINEERED MUTATION SEQRES 1 A 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 A 335 LYS ALA ARG SER ALA PRO CYS ALA ASN ILE LEU ASN ARG SEQRES 3 A 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 A 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 A 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 A 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 A 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 A 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 A 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 A 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 A 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 A 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 A 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 A 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 A 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 A 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 A 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 A 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 A 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 A 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 A 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 A 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 A 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 A 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 A 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 A 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS SEQRES 1 B 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 B 335 LYS ALA ARG SER ALA PRO CYS ALA ASN ILE LEU ASN ARG SEQRES 3 B 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 B 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 B 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 B 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 B 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 B 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 B 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 B 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 B 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 B 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 B 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 B 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 B 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 B 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 B 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 B 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 B 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 B 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 B 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 B 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 B 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 B 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 B 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 B 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS HET I7P A 501 40 HET ATP A 502 31 HET MG A 503 1 HET MG A 504 1 HETNAM I7P (1R,2R,3S,4S,5R,6S)-2,3,4,5,6-PENTAKIS(PHOSPHONOOXY) HETNAM 2 I7P CYCLOHEXYL TRIHYDROGEN DIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN I7P 1D-MYO-INOSITOL 5-DIPHOSPHATE 1,2,3,4,6- HETSYN 2 I7P PENTAKISPHOSPHATE FORMUL 3 I7P C6 H19 O27 P7 FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *419(H2 O) HELIX 1 AA1 MET A 40 ARG A 45 1 6 HELIX 2 AA2 SER A 46 ALA A 58 1 13 HELIX 3 AA3 GLY A 68 GLU A 75 1 8 HELIX 4 AA4 ALA A 76 TRP A 80 5 5 HELIX 5 AA5 PRO A 95 LYS A 107 1 13 HELIX 6 AA6 VAL A 114 TRP A 121 5 8 HELIX 7 AA7 ASP A 122 ILE A 133 1 12 HELIX 8 AA8 ASN A 152 GLY A 164 1 13 HELIX 9 AA9 PRO A 211 GLY A 215 5 5 HELIX 10 AB1 VAL A 253 ASN A 255 5 3 HELIX 11 AB2 SER A 299 PHE A 313 1 15 HELIX 12 AB3 ASN A 343 GLU A 362 1 20 HELIX 13 AB4 MET B 40 ARG B 45 1 6 HELIX 14 AB5 SER B 46 ALA B 58 1 13 HELIX 15 AB6 GLY B 68 GLU B 75 1 8 HELIX 16 AB7 PRO B 95 LYS B 107 1 13 HELIX 17 AB8 VAL B 114 TRP B 121 5 8 HELIX 18 AB9 ASP B 122 ILE B 133 1 12 HELIX 19 AC1 ASN B 152 GLY B 164 1 13 HELIX 20 AC2 PRO B 211 GLY B 215 5 5 HELIX 21 AC3 SER B 299 PHE B 313 1 15 HELIX 22 AC4 ASN B 343 GLU B 362 1 20 SHEET 1 AA1 4 GLU A 63 VAL A 66 0 SHEET 2 AA1 4 VAL A 34 CYS A 38 1 N VAL A 35 O GLU A 63 SHEET 3 AA1 4 TYR A 85 CYS A 88 1 O TYR A 85 N GLY A 36 SHEET 4 AA1 4 PHE A 109 CYS A 110 1 O PHE A 109 N LEU A 86 SHEET 1 AA2 6 ARG A 140 CYS A 143 0 SHEET 2 AA2 6 PHE A 245 GLU A 249 -1 O TYR A 247 N LEU A 141 SHEET 3 AA2 6 TYR A 194 PRO A 198 -1 N VAL A 195 O GLU A 248 SHEET 4 AA2 6 TYR A 207 TYR A 209 -1 O TYR A 207 N GLU A 196 SHEET 5 AA2 6 GLY A 218 VAL A 225 -1 O ARG A 219 N ILE A 208 SHEET 6 AA2 6 LYS A 228 ASP A 233 -1 O ASP A 233 N GLY A 218 SHEET 1 AA3 3 VAL A 175 ASP A 179 0 SHEET 2 AA3 3 THR A 182 VAL A 185 -1 O SER A 184 N LYS A 176 SHEET 3 AA3 3 LYS A 188 LYS A 191 -1 O LYS A 188 N VAL A 185 SHEET 1 AA4 5 PHE A 294 THR A 296 0 SHEET 2 AA4 5 SER A 269 LYS A 275 -1 N THR A 273 O PHE A 294 SHEET 3 AA4 5 GLU A 257 VAL A 264 -1 N ASP A 258 O ARG A 274 SHEET 4 AA4 5 VAL A 317 VAL A 325 -1 O PHE A 320 N VAL A 261 SHEET 5 AA4 5 GLN A 328 GLY A 336 -1 O GLN A 328 N VAL A 325 SHEET 1 AA5 4 GLU B 63 VAL B 66 0 SHEET 2 AA5 4 VAL B 34 CYS B 38 1 N VAL B 35 O GLU B 63 SHEET 3 AA5 4 TYR B 85 CYS B 88 1 O ILE B 87 N CYS B 38 SHEET 4 AA5 4 PHE B 109 CYS B 110 1 O PHE B 109 N LEU B 86 SHEET 1 AA6 6 ARG B 140 CYS B 143 0 SHEET 2 AA6 6 PHE B 245 GLU B 249 -1 O PHE B 245 N CYS B 143 SHEET 3 AA6 6 TYR B 194 PRO B 198 -1 N VAL B 195 O GLU B 248 SHEET 4 AA6 6 TYR B 207 TYR B 209 -1 O TYR B 207 N GLU B 196 SHEET 5 AA6 6 GLY B 218 LYS B 220 -1 O ARG B 219 N ILE B 208 SHEET 6 AA6 6 TYR B 232 ASP B 233 -1 O ASP B 233 N GLY B 218 SHEET 1 AA7 3 VAL B 175 ASP B 179 0 SHEET 2 AA7 3 THR B 182 VAL B 185 -1 O SER B 184 N LYS B 176 SHEET 3 AA7 3 LYS B 188 LYS B 191 -1 O LYS B 188 N VAL B 185 SHEET 1 AA8 5 PHE B 294 ILE B 295 0 SHEET 2 AA8 5 SER B 269 THR B 273 -1 N THR B 273 O PHE B 294 SHEET 3 AA8 5 GLU B 257 VAL B 264 -1 N TYR B 262 O HIS B 270 SHEET 4 AA8 5 VAL B 317 VAL B 325 -1 O CYS B 318 N THR B 263 SHEET 5 AA8 5 GLN B 328 GLY B 336 -1 O ILE B 332 N ASP B 321 LINK OD2 ASP A 321 MG MG A 503 1555 1555 2.07 LINK OD2 ASP A 333 MG MG A 503 1555 1555 2.30 LINK OD1 ASP A 333 MG MG A 504 1555 1555 2.66 LINK OD2 ASP A 333 MG MG A 504 1555 1555 1.92 LINK OD1 ASN A 335 MG MG A 504 1555 1555 2.39 LINK O3G ATP A 502 MG MG A 503 1555 1555 2.16 LINK O3B ATP A 502 MG MG A 503 1555 1555 2.22 LINK O1A ATP A 502 MG MG A 503 1555 1555 1.94 LINK O1G ATP A 502 MG MG A 504 1555 1555 2.68 LINK O1B ATP A 502 MG MG A 504 1555 1555 2.25 LINK MG MG A 503 O HOH A 693 1555 1555 2.41 LINK MG MG A 504 O HOH A 708 1555 1555 2.05 CISPEP 1 LYS A 192 PRO A 193 0 4.75 CISPEP 2 LYS B 192 PRO B 193 0 3.94 CRYST1 47.777 88.495 86.569 90.00 94.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020931 0.000000 0.001750 0.00000 SCALE2 0.000000 0.011300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011592 0.00000